Gcaud3657.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3657.t1
Unique Name	Gcaud3657.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	454

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_78_length_55752_cov_4.650078	contig	NODE_78_length_55752_cov_4.650078:11992..14965 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3657	Gcaud3657	Gracilaria caudata M_176_S67 male	gene	NODE_78_length_55752_cov_4.650078 11992..14965 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3657.t1	Gcaud3657.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_78_length_55752_cov_4.650078 11992..14965 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3657.t1.start1	Gcaud3657.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_78_length_55752_cov_4.650078 11992..11994 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3657.t1.CDS1	Gcaud3657.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_78_length_55752_cov_4.650078 11992..12565 +
Gcaud3657.t1.CDS2	Gcaud3657.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_78_length_55752_cov_4.650078 14007..14381 +
Gcaud3657.t1.CDS3	Gcaud3657.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_78_length_55752_cov_4.650078 14553..14965 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3657.t1.exon1	Gcaud3657.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_78_length_55752_cov_4.650078 11992..12565 +
Gcaud3657.t1.exon2	Gcaud3657.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_78_length_55752_cov_4.650078 14007..14381 +
Gcaud3657.t1.exon3	Gcaud3657.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_78_length_55752_cov_4.650078 14553..14965 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3657.t1.intron1	Gcaud3657.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_78_length_55752_cov_4.650078 12566..14006 +
Gcaud3657.t1.intron2	Gcaud3657.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_78_length_55752_cov_4.650078 14382..14552 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3657.t1.stop1	Gcaud3657.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_78_length_55752_cov_4.650078 14963..14965 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_78_length_55752_cov_4.650078:11992..14965+
coding sequence from alignment at NODE_78_length_55752_cov_4.650078:11992..14965+

mRNA sequence

>Gcaud3657.t1 ID=Gcaud3657.t1|Name=Gcaud3657.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=454bp
LEQFHEIGRGSLKISASIVTRTAWSTRPETSLAKKYYLDNRSERVLIQVE
SKRIRQASLESQYRAKVLHFVDANPGVSVLIGGPGSRRKFRLESIFLVQT
EPKLFLGRQRGRDFIVSSVLNVVERMVGVKAAQKSLAIASTWDHTLNNVA
STAMLIQKFKLGPQFSRVDLEFNSISSNAGFRKGGFVMVRM*FGIGKKDV
VLDSFFVTNLRQAKGFEKRNEVFEALQRWFQKASWPFTETQIMLYPSRAE
KHWFRISVHKENNLVTVYDSFTRITAIASEASQIMVAFLQFLQRKLQLSV
TEWVTIEKAAYPEQTDVKAEGTSGNVPKAEISPTADDNIDGAIGAKIQKF
EKCSIEENIESEQRSLRQAIEPHIFCSGSKALLSQDVPKSRQAKGTDCSE
NRFESNESQQKLESDVCKTPLMGDSRERLNAIQSTLQLRSPSKRLRRRPM
KYR*

spliced messenger RNA

>Gcaud3657.t1 ID=Gcaud3657.t1|Name=Gcaud3657.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1362bp|location=Sequence derived from alignment at NODE_78_length_55752_cov_4.650078:11992..14965+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGAACAATTCCACGAAATAGGTCGAGGGAGTCTCAAGATTTCTGCAAG
TATTGTAACTCGTACTGCATGGTCGACAAGGCCGGAAACCAGTCTGGCCA
AGAAGTACTATCTCGACAACCGGTCAGAACGTGTCTTAATACAAGTTGAA
TCTAAGCGAATACGCCAGGCATCTCTTGAATCGCAATATAGGGCAAAGGT
CCTGCACTTTGTAGATGCAAATCCAGGGGTGAGTGTATTGATTGGTGGAC
CTGGTTCTCGTCGAAAATTTCGTCTTGAATCAATATTCTTGGTTCAAACA
GAGCCAAAACTTTTCTTGGGCAGGCAACGAGGACGTGATTTTATTGTTTC
ATCTGTTTTGAATGTGGTGGAGCGAATGGTCGGTGTAAAAGCTGCACAAA
AATCTCTTGCAATTGCGAGTACATGGGATCATACATTGAATAATGTTGCA
TCGACGGCTATGCTTATTCAAAAGTTCAAATTGGGACCGCAATTTAGCAG
AGTTGATCTAGAGTTCAACAGCATATCGTCCAACGCAGGCTTCAGAAAGG
GAGGCTTTGTAATGGTTCGTATGTAATTTGGAATTGGTAAGAAGGATGTT
GTGCTGGACAGTTTCTTTGTTACGAATCTGAGACAAGCGAAAGGCTTCGA
AAAGCGTAACGAAGTGTTTGAAGCCCTGCAAAGGTGGTTCCAAAAAGCTT
CCTGGCCCTTCACGGAAACGCAGATTATGTTATACCCTTCCCGAGCCGAG
AAACACTGGTTTCGTATTTCGGTACATAAGGAAAACAATCTGGTCACTGT
TTACGACTCCTTTACTAGAATAACTGCCATTGCTTCTGAAGCCTCACAGA
TCATGGTGGCTTTTCTGCAGTTTCTTCAACGAAAGTTGCAACTATCTGTT
ACGGAATGGGTGACAATTGAGAAGGCTGCGTATCCAGAACAAACGGATGT
AAAAGCGGAGGGTACCAGTGGCAATGTTCCTAAAGCAGAGATCTCCCCAA
CAGCTGACGATAACATAGACGGAGCAATTGGTGCTAAGATTCAAAAGTTT
GAGAAATGTTCAATTGAGGAAAACATTGAAAGTGAGCAAAGATCATTGAG
ACAGGCTATCGAACCTCATATATTTTGTTCAGGAAGCAAAGCACTGCTAT
CTCAAGACGTACCAAAATCTCGACAAGCAAAAGGTACAGATTGTTCAGAG
AACCGCTTTGAAAGCAATGAAAGCCAGCAAAAGTTGGAGAGTGACGTGTG
CAAAACTCCACTAATGGGTGATTCTCGAGAACGTCTGAACGCCATTCAGA
GCACGCTTCAGTTGCGATCCCCATCAAAACGTTTGCGGCGTCGTCCCATG
AAGTACAGATGA

protein sequence of Gcaud3657.t1

>Gcaud3657.t1 ID=Gcaud3657.t1|Name=Gcaud3657.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=454bp
LEQFHEIGRGSLKISASIVTRTAWSTRPETSLAKKYYLDNRSERVLIQVE
SKRIRQASLESQYRAKVLHFVDANPGVSVLIGGPGSRRKFRLESIFLVQT
EPKLFLGRQRGRDFIVSSVLNVVERMVGVKAAQKSLAIASTWDHTLNNVA
STAMLIQKFKLGPQFSRVDLEFNSISSNAGFRKGGFVMVRM*FGIGKKDV
VLDSFFVTNLRQAKGFEKRNEVFEALQRWFQKASWPFTETQIMLYPSRAE
KHWFRISVHKENNLVTVYDSFTRITAIASEASQIMVAFLQFLQRKLQLSV
TEWVTIEKAAYPEQTDVKAEGTSGNVPKAEISPTADDNIDGAIGAKIQKF
EKCSIEENIESEQRSLRQAIEPHIFCSGSKALLSQDVPKSRQAKGTDCSE
NRFESNESQQKLESDVCKTPLMGDSRERLNAIQSTLQLRSPSKRLRRRPM
KYR*

mRNA from alignment at NODE_78_length_55752_cov_4.650078:11992..14965+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3657.t1 ID=Gcaud3657.t1|Name=Gcaud3657.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2974bp|location=Sequence derived from alignment at NODE_78_length_55752_cov_4.650078:11992..14965+ (Gracilaria caudata M_176_S67 male)
CTGGAACAATTCCACGAAATAGGTCGAGGGAGTCTCAAGATTTCTGCAAG
TATTGTAACTCGTACTGCATGGTCGACAAGGCCGGAAACCAGTCTGGCCA
AGAAGTACTATCTCGACAACCGGTCAGAACGTGTCTTAATACAAGTTGAA
TCTAAGCGAATACGCCAGGCATCTCTTGAATCGCAATATAGGGCAAAGGT
CCTGCACTTTGTAGATGCAAATCCAGGGGTGAGTGTATTGATTGGTGGAC
CTGGTTCTCGTCGAAAATTTCGTCTTGAATCAATATTCTTGGTTCAAACA
GAGCCAAAACTTTTCTTGGGCAGGCAACGAGGACGTGATTTTATTGTTTC
ATCTGTTTTGAATGTGGTGGAGCGAATGGTCGGTGTAAAAGCTGCACAAA
AATCTCTTGCAATTGCGAGTACATGGGATCATACATTGAATAATGTTGCA
TCGACGGCTATGCTTATTCAAAAGTTCAAATTGGGACCGCAATTTAGCAG
AGTTGATCTAGAGTTCAACAGCATATCGTCCAACGCAGGCTTCAGAAAGG
GAGGCTTTGTAATGGTTCGTATGTGTAAGGGATATATCgtagaccacgtg
gtagccgtcgatatcattcgacgactcatcctcgaaagtgtgcatgaata
tccaatgcgtctttgcagggaggcgctcacaatttgtgggggaggtccag
aaatcctgggttacagaaattcgagaGTTATACTTTCAGTAATCCCACAA
CAAAATCAAGTCTCGAACGTACGATTGGAGAACTATACAGTTCCGAGCTG
TTTCGCCATCTTCGCTTCTCCGTGTAGGCAATTAGTTGAGCTTTGGTTTT
GTAATATTTAGTCTGAAGGCATGAAAATCGAAATTATTACAATGAGAGAA
GTCTTATTTGTATTCGGAGCCACAAAAAAGACCGACCAGACATCTTTTGC
AGATAATTTGTTGCTATCCGCAAAGCACTTGAAAAACACTTACAGATATA
GCCATAATTTCAAGCCAAAAGCGTAATCGAGGAAGCATACCCACATTCTA
ATTCCCCATTTACCATCTGAGCACTCGAACCGGAGTTCTGTGATTCAGCC
AATGAATACTATATACGGCACCCATCCTGAATGATTGCGCACCCTCTTTC
CAGTATTGGCAGGAAAGATTCTCCTTTCCTCCACTTCATCTTCTCGAATA
ACTTATCACTTGAGAGAACGTCGAGAAGGTGGGGCTGCATGAGCACATCG
AGGACCACAGTCTTCAGGGATCATTATCACCCAACTGAAGTACCTCTACA
AGGAACCAATTTATTTCAAAAAATGGAAAACGAAACTGCTCAAACAGAAC
TATGTGAACCAGAGCTGAGTTCTAGGGCTAGAGCCCAACTTTTCATTGCT
CGATAAGCTGTAATTGAAATCCACACGTAAACATGAAATCCAGTGAGAGA
AATATGAGCCTTACAGGTGCGCCTGTCTTTGCTCTGGGTAGGCTCAACTT
CAATGGGACTGAGGTAATTCAGTCCACATATAGGCACCTTCCTCTCGCCG
ATCATATAGAAGAAAATGGAGCGTAACGTATTTGGGGAGATCGAGATAAA
CGTTGATGAGCATCTTAATAGAAAACGTGCCCCCCAAGAAGAAATCCCGG
TTCTAGTCGGGCCTGGAAAATCTCGACGAAGAGAAAACAAATCAGGAAAT
CAGGAAAGGCAGCTACACGCAAAGGCAATGATAAGCGTACAAAATCAGAA
AGAGATACTACAAAATCAACTTTGGAGAGCCATGCAGCATCGCGCAGTAC
AGAAGCGCAGTCAGGAAAGCTCAGAGCGCTGCTGGAAATCACTGCAGAAG
GGAGGAAGCTACTTCCCTTCCCTTTCAAATCCTGCTCATTCCAGAACGTC
ATCGCATCCGCAGCACGCGTGACTGAACTTCGCAAAGACTCTAGTGGGGT
GGACAATGAGTTTATGGACATCTTTGCCCTGCGTTTACGATAACGGAACA
TCGCGCGTTTAAGAGAATTTGGAATTGGTAAGAAGGATGTTGTGCTGGAC
AGTTTCTTTGTTACGAATCTGAGACAAGCGAAAGGCTTCGAAAAGCGTAA
CGAAGTGTTTGAAGCCCTGCAAAGGTGGTTCCAAAAAGCTTCCTGGCCCT
TCACGGAAACGCAGATTATGTTATACCCTTCCCGAGCCGAGAAACACTGG
TTTCGTATTTCGGTACATAAGGAAAACAATCTGGTCACTGTTTACGACTC
CTTTACTAGAATAACTGCCATTGCTTCTGAAGCCTCACAGATCATGGTGG
CTTTTCTGCAGTTTCTTCAACGAAAGTTGCAACTATCTGTTACGGAATGG
GTGACAATTGAGAAGGCTGCGTATCCAGAACAAACGGATGGTAGGTCCTG
TGGAATATTTGTAGCCTGAGTCATGTAGTATTTAGAGCGGGGAGAGGTTC
CAGCATTTGAAGAGTCCCATATTCCATTATTAAGTCAAATGTCTTAGTTT
TTCATCAGAGGATATTCTGTGGTTGCTCTAAATGACTTCACCAACCCCCA
AATCGCTCAAGTAAAAGCGGAGGGTACCAGTGGCAATGTTCCTAAAGCAG
AGATCTCCCCAACAGCTGACGATAACATAGACGGAGCAATTGGTGCTAAG
ATTCAAAAGTTTGAGAAATGTTCAATTGAGGAAAACATTGAAAGTGAGCA
AAGATCATTGAGACAGGCTATCGAACCTCATATATTTTGTTCAGGAAGCA
AAGCACTGCTATCTCAAGACGTACCAAAATCTCGACAAGCAAAAGGTACA
GATTGTTCAGAGAACCGCTTTGAAAGCAATGAAAGCCAGCAAAAGTTGGA
GAGTGACGTGTGCAAAACTCCACTAATGGGTGATTCTCGAGAACGTCTGA
ACGCCATTCAGAGCACGCTTCAGTTGCGATCCCCATCAAAACGTTTGCGG
CGTCGTCCCATGAAGTACAGATGA

Coding sequence (CDS) from alignment at NODE_78_length_55752_cov_4.650078:11992..14965+

>Gcaud3657.t1 ID=Gcaud3657.t1|Name=Gcaud3657.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1362bp|location=Sequence derived from alignment at NODE_78_length_55752_cov_4.650078:11992..14965+ (Gracilaria caudata M_176_S67 male)
CTGGAACAATTCCACGAAATAGGTCGAGGGAGTCTCAAGATTTCTGCAAG
TATTGTAACTCGTACTGCATGGTCGACAAGGCCGGAAACCAGTCTGGCCA
AGAAGTACTATCTCGACAACCGGTCAGAACGTGTCTTAATACAAGTTGAA
TCTAAGCGAATACGCCAGGCATCTCTTGAATCGCAATATAGGGCAAAGGT
CCTGCACTTTGTAGATGCAAATCCAGGGGTGAGTGTATTGATTGGTGGAC
CTGGTTCTCGTCGAAAATTTCGTCTTGAATCAATATTCTTGGTTCAAACA
GAGCCAAAACTTTTCTTGGGCAGGCAACGAGGACGTGATTTTATTGTTTC
ATCTGTTTTGAATGTGGTGGAGCGAATGGTCGGTGTAAAAGCTGCACAAA
AATCTCTTGCAATTGCGAGTACATGGGATCATACATTGAATAATGTTGCA
TCGACGGCTATGCTTATTCAAAAGTTCAAATTGGGACCGCAATTTAGCAG
AGTTGATCTAGAGTTCAACAGCATATCGTCCAACGCAGGCTTCAGAAAGG
GAGGCTTTGTAATGGTTCGTATGTAATTTGGAATTGGTAAGAAGGATGTT
GTGCTGGACAGTTTCTTTGTTACGAATCTGAGACAAGCGAAAGGCTTCGA
AAAGCGTAACGAAGTGTTTGAAGCCCTGCAAAGGTGGTTCCAAAAAGCTT
CCTGGCCCTTCACGGAAACGCAGATTATGTTATACCCTTCCCGAGCCGAG
AAACACTGGTTTCGTATTTCGGTACATAAGGAAAACAATCTGGTCACTGT
TTACGACTCCTTTACTAGAATAACTGCCATTGCTTCTGAAGCCTCACAGA
TCATGGTGGCTTTTCTGCAGTTTCTTCAACGAAAGTTGCAACTATCTGTT
ACGGAATGGGTGACAATTGAGAAGGCTGCGTATCCAGAACAAACGGATGT
AAAAGCGGAGGGTACCAGTGGCAATGTTCCTAAAGCAGAGATCTCCCCAA
CAGCTGACGATAACATAGACGGAGCAATTGGTGCTAAGATTCAAAAGTTT
GAGAAATGTTCAATTGAGGAAAACATTGAAAGTGAGCAAAGATCATTGAG
ACAGGCTATCGAACCTCATATATTTTGTTCAGGAAGCAAAGCACTGCTAT
CTCAAGACGTACCAAAATCTCGACAAGCAAAAGGTACAGATTGTTCAGAG
AACCGCTTTGAAAGCAATGAAAGCCAGCAAAAGTTGGAGAGTGACGTGTG
CAAAACTCCACTAATGGGTGATTCTCGAGAACGTCTGAACGCCATTCAGA
GCACGCTTCAGTTGCGATCCCCATCAAAACGTTTGCGGCGTCGTCCCATG
AAGTACAGATGA