Gcaud3641.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3641.t1
Unique Name	Gcaud3641.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	481

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_120_length_47600_cov_4.363763	contig	NODE_120_length_47600_cov_4.363763:18291..19733 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704461.1
PFAMs	Aa_trans
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14209
KEGG TC	2.A.18.8
KEGG Pathway	ko04138,map04138
Evalue	1.2e-90
EggNOG OGs	COG0814@1\|root,KOG1304@2759\|Eukaryota
Description	amino acid transmembrane transporter activity
COG category	E
BRITE	ko00000,ko00001,ko02000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3641	Gcaud3641	Gracilaria caudata M_176_S67 male	gene	NODE_120_length_47600_cov_4.363763 18291..19733 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3641.t1.start1	Gcaud3641.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_120_length_47600_cov_4.363763 18291..18293 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3641.t1.CDS1	Gcaud3641.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_120_length_47600_cov_4.363763 18291..19733 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3641.t1.exon1	Gcaud3641.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_120_length_47600_cov_4.363763 18291..19733 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3641.t1.stop1	Gcaud3641.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_120_length_47600_cov_4.363763 19731..19733 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3641.t1	Gcaud3641.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_120_length_47600_cov_4.363763 18291..19733 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_120_length_47600_cov_4.363763:18291..19733+
coding sequence from alignment at NODE_120_length_47600_cov_4.363763:18291..19733+

mRNA sequence

>Gcaud3641.t1 ID=Gcaud3641.t1|Name=Gcaud3641.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=481bp
MHADPPPSTRLASSDGGVVGSSGRFDLLTDIGNMLKAFIGINFMYVAYAF
SNAGLWRGSVALIIITFITEHCCLLLIDVKNASPVSLPTSAVPELCLDDA
ESEKDTSTLETLEYSTEEDLENQGEQTHLHQNTSYGDIARAVGGPSVGAV
INLAVVLTQFGFCVGYLIFLSQTLHDLLKSSHAVMWFVLFPLPALLSIAL
LSSIRSLGPFSILANIALFIGFVSVVTFLAKHFRWQPSNPPITSFPLFFG
QMTAALEGIGLVVPVQSSMKDPHRFPLVLRIALVFLSAVLMVMGILGFAS
FGDGTRSIILLNFGDSPIVVAVKIVLMIGILFTYPLQIVPVFQYFERVFL
PREAVETQTSSSPEVSSSTVSAMISSGFFVSDWRRISIRFVIVLCTALVA
VLAGGSFGLFQSLVGSVGGTVLAYCAPPVLYNMAFKDSMSRWTRYKNFAL
VLFGVLGGLLGAYTSVKEIVEIHKGNSKPV*

spliced messenger RNA

>Gcaud3641.t1 ID=Gcaud3641.t1|Name=Gcaud3641.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1443bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:18291..19733+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGCGGATCCACCTCCTTCGACGCGGCTCGCGTCTTCGGACGGAGG
GGTTGTGGGCAGCAGTGGGCGGTTTGATTTGCTTACTGATATTGGAAACA
TGTTGAAGGCTTTTATTGGCATCAACTTCATGTATGTGGCGTATGCGTTT
TCGAATGCGGGCTTGTGGCGTGGCTCTGTTGCACTGATTATCATCACCTT
CATCACAGAGCATTGCTGTTTGTTGCTTATCGATGTTAAGAACGCTTCGC
CGGTTTCTTTGCCTACTTCCGCTGTACCCGAGCTTTGCCTAGACGATGCG
GAGTCTGAGAAAGACACCTCCACCTTAGAAACTCTTGAATATTCCACCGA
AGAAGACCTGGAAAACCAAGGCGAGCAAACGCACCTGCACCAAAATACTT
CGTACGGGGATATAGCAAGAGCTGTGGGCGGGCCTTCAGTCGGTGCTGTT
ATAAACCTCGCTGTCGTGCTCACGCAGTTCGGTTTTTGCGTCGGCTATCT
AATATTTCTATCGCAAACGCTTCACGACCTCCTCAAATCCTCGCATGCAG
TGATGTGGTTTGTGCTCTTCCCTCTTCCTGCTTTGCTGTCAATTGCTCTA
CTCTCTTCAATTCGGTCGCTTGGCCCCTTCTCTATACTGGCAAATATTGC
CCTTTTCATTGGGTTCGTCTCTGTCGTCACGTTTCTAGCAAAGCATTTTC
GGTGGCAACCATCAAACCCACCAATAACTAGCTTTCCTCTGTTCTTTGGA
CAGATGACAGCTGCACTAGAGGGCATTGGTTTGGTTGTTCCTGTGCAGTC
GTCCATGAAAGATCCCCATCGCTTCCCTTTAGTGCTCAGAATCGCGCTTG
TATTTCTGTCAGCAGTTCTTATGGTCATGGGCATTTTGGGCTTTGCTAGC
TTTGGTGATGGTACCAGATCCATTATCTTACTCAACTTTGGTGATTCTCC
CATTGTTGTTGCGGTTAAGATTGTTCTTATGATCGGTATACTGTTCACTT
ATCCGCTGCAAATCGTTCCTGTTTTCCAATACTTTGAGCGTGTCTTTTTA
CCGCGGGAAGCAGTGGAAACCCAGACTAGTAGCTCACCAGAGGTGTCTTC
GTCTACTGTTTCGGCAATGATCTCATCCGGTTTCTTTGTAAGCGATTGGC
GCAGAATTAGTATCAGATTCGTGATTGTGCTTTGCACAGCCCTAGTTGCC
GTCTTAGCTGGTGGAAGTTTTGGTTTATTCCAAAGCTTAGTAGGATCTGT
GGGAGGTACCGTTCTTGCGTACTGTGCCCCACCGGTTCTGTACAACATGG
CCTTCAAGGATAGTATGTCGAGATGGACACGATACAAGAACTTTGCATTG
GTGCTTTTCGGCGTGCTTGGTGGACTGCTTGGAGCGTATACATCTGTCAA
GGAGATTGTGGAAATTCACAAGGGCAATTCCAAACCAGTTTGA

protein sequence of Gcaud3641.t1

>Gcaud3641.t1 ID=Gcaud3641.t1|Name=Gcaud3641.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=481bp
MHADPPPSTRLASSDGGVVGSSGRFDLLTDIGNMLKAFIGINFMYVAYAF
SNAGLWRGSVALIIITFITEHCCLLLIDVKNASPVSLPTSAVPELCLDDA
ESEKDTSTLETLEYSTEEDLENQGEQTHLHQNTSYGDIARAVGGPSVGAV
INLAVVLTQFGFCVGYLIFLSQTLHDLLKSSHAVMWFVLFPLPALLSIAL
LSSIRSLGPFSILANIALFIGFVSVVTFLAKHFRWQPSNPPITSFPLFFG
QMTAALEGIGLVVPVQSSMKDPHRFPLVLRIALVFLSAVLMVMGILGFAS
FGDGTRSIILLNFGDSPIVVAVKIVLMIGILFTYPLQIVPVFQYFERVFL
PREAVETQTSSSPEVSSSTVSAMISSGFFVSDWRRISIRFVIVLCTALVA
VLAGGSFGLFQSLVGSVGGTVLAYCAPPVLYNMAFKDSMSRWTRYKNFAL
VLFGVLGGLLGAYTSVKEIVEIHKGNSKPV*

mRNA from alignment at NODE_120_length_47600_cov_4.363763:18291..19733+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3641.t1 ID=Gcaud3641.t1|Name=Gcaud3641.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1443bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:18291..19733+ (Gracilaria caudata M_176_S67 male)
ATGCATGCGGATCCACCTCCTTCGACGCGGCTCGCGTCTTCGGACGGAGG
GGTTGTGGGCAGCAGTGGGCGGTTTGATTTGCTTACTGATATTGGAAACA
TGTTGAAGGCTTTTATTGGCATCAACTTCATGTATGTGGCGTATGCGTTT
TCGAATGCGGGCTTGTGGCGTGGCTCTGTTGCACTGATTATCATCACCTT
CATCACAGAGCATTGCTGTTTGTTGCTTATCGATGTTAAGAACGCTTCGC
CGGTTTCTTTGCCTACTTCCGCTGTACCCGAGCTTTGCCTAGACGATGCG
GAGTCTGAGAAAGACACCTCCACCTTAGAAACTCTTGAATATTCCACCGA
AGAAGACCTGGAAAACCAAGGCGAGCAAACGCACCTGCACCAAAATACTT
CGTACGGGGATATAGCAAGAGCTGTGGGCGGGCCTTCAGTCGGTGCTGTT
ATAAACCTCGCTGTCGTGCTCACGCAGTTCGGTTTTTGCGTCGGCTATCT
AATATTTCTATCGCAAACGCTTCACGACCTCCTCAAATCCTCGCATGCAG
TGATGTGGTTTGTGCTCTTCCCTCTTCCTGCTTTGCTGTCAATTGCTCTA
CTCTCTTCAATTCGGTCGCTTGGCCCCTTCTCTATACTGGCAAATATTGC
CCTTTTCATTGGGTTCGTCTCTGTCGTCACGTTTCTAGCAAAGCATTTTC
GGTGGCAACCATCAAACCCACCAATAACTAGCTTTCCTCTGTTCTTTGGA
CAGATGACAGCTGCACTAGAGGGCATTGGTTTGGTTGTTCCTGTGCAGTC
GTCCATGAAAGATCCCCATCGCTTCCCTTTAGTGCTCAGAATCGCGCTTG
TATTTCTGTCAGCAGTTCTTATGGTCATGGGCATTTTGGGCTTTGCTAGC
TTTGGTGATGGTACCAGATCCATTATCTTACTCAACTTTGGTGATTCTCC
CATTGTTGTTGCGGTTAAGATTGTTCTTATGATCGGTATACTGTTCACTT
ATCCGCTGCAAATCGTTCCTGTTTTCCAATACTTTGAGCGTGTCTTTTTA
CCGCGGGAAGCAGTGGAAACCCAGACTAGTAGCTCACCAGAGGTGTCTTC
GTCTACTGTTTCGGCAATGATCTCATCCGGTTTCTTTGTAAGCGATTGGC
GCAGAATTAGTATCAGATTCGTGATTGTGCTTTGCACAGCCCTAGTTGCC
GTCTTAGCTGGTGGAAGTTTTGGTTTATTCCAAAGCTTAGTAGGATCTGT
GGGAGGTACCGTTCTTGCGTACTGTGCCCCACCGGTTCTGTACAACATGG
CCTTCAAGGATAGTATGTCGAGATGGACACGATACAAGAACTTTGCATTG
GTGCTTTTCGGCGTGCTTGGTGGACTGCTTGGAGCGTATACATCTGTCAA
GGAGATTGTGGAAATTCACAAGGGCAATTCCAAACCAGTTTGA

Coding sequence (CDS) from alignment at NODE_120_length_47600_cov_4.363763:18291..19733+

>Gcaud3641.t1 ID=Gcaud3641.t1|Name=Gcaud3641.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1443bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:18291..19733+ (Gracilaria caudata M_176_S67 male)
ATGCATGCGGATCCACCTCCTTCGACGCGGCTCGCGTCTTCGGACGGAGG
GGTTGTGGGCAGCAGTGGGCGGTTTGATTTGCTTACTGATATTGGAAACA
TGTTGAAGGCTTTTATTGGCATCAACTTCATGTATGTGGCGTATGCGTTT
TCGAATGCGGGCTTGTGGCGTGGCTCTGTTGCACTGATTATCATCACCTT
CATCACAGAGCATTGCTGTTTGTTGCTTATCGATGTTAAGAACGCTTCGC
CGGTTTCTTTGCCTACTTCCGCTGTACCCGAGCTTTGCCTAGACGATGCG
GAGTCTGAGAAAGACACCTCCACCTTAGAAACTCTTGAATATTCCACCGA
AGAAGACCTGGAAAACCAAGGCGAGCAAACGCACCTGCACCAAAATACTT
CGTACGGGGATATAGCAAGAGCTGTGGGCGGGCCTTCAGTCGGTGCTGTT
ATAAACCTCGCTGTCGTGCTCACGCAGTTCGGTTTTTGCGTCGGCTATCT
AATATTTCTATCGCAAACGCTTCACGACCTCCTCAAATCCTCGCATGCAG
TGATGTGGTTTGTGCTCTTCCCTCTTCCTGCTTTGCTGTCAATTGCTCTA
CTCTCTTCAATTCGGTCGCTTGGCCCCTTCTCTATACTGGCAAATATTGC
CCTTTTCATTGGGTTCGTCTCTGTCGTCACGTTTCTAGCAAAGCATTTTC
GGTGGCAACCATCAAACCCACCAATAACTAGCTTTCCTCTGTTCTTTGGA
CAGATGACAGCTGCACTAGAGGGCATTGGTTTGGTTGTTCCTGTGCAGTC
GTCCATGAAAGATCCCCATCGCTTCCCTTTAGTGCTCAGAATCGCGCTTG
TATTTCTGTCAGCAGTTCTTATGGTCATGGGCATTTTGGGCTTTGCTAGC
TTTGGTGATGGTACCAGATCCATTATCTTACTCAACTTTGGTGATTCTCC
CATTGTTGTTGCGGTTAAGATTGTTCTTATGATCGGTATACTGTTCACTT
ATCCGCTGCAAATCGTTCCTGTTTTCCAATACTTTGAGCGTGTCTTTTTA
CCGCGGGAAGCAGTGGAAACCCAGACTAGTAGCTCACCAGAGGTGTCTTC
GTCTACTGTTTCGGCAATGATCTCATCCGGTTTCTTTGTAAGCGATTGGC
GCAGAATTAGTATCAGATTCGTGATTGTGCTTTGCACAGCCCTAGTTGCC
GTCTTAGCTGGTGGAAGTTTTGGTTTATTCCAAAGCTTAGTAGGATCTGT
GGGAGGTACCGTTCTTGCGTACTGTGCCCCACCGGTTCTGTACAACATGG
CCTTCAAGGATAGTATGTCGAGATGGACACGATACAAGAACTTTGCATTG
GTGCTTTTCGGCGTGCTTGGTGGACTGCTTGGAGCGTATACATCTGTCAA
GGAGATTGTGGAAATTCACAAGGGCAATTCCAAACCAGTTTGA