Gcaud3640.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3640.t1
Unique NameGcaud3640.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length361
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_120_length_47600_cov_4.363763contigNODE_120_length_47600_cov_4.363763:16687..17769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703487.1
Preferred nameFBP
PFAMsFBPase
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K03841
KEGG ReactionR00762,R04780
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910
KEGG ModuleM00003,M00165,M00167,M00344
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005985,GO:0005986,GO:0005996,GO:0006000,GO:0006002,GO:0006006,GO:0006091,GO:0006094,GO:0006793,GO:0006796,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009266,GO:0009311,GO:0009312,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009719,GO:0009725,GO:0009735,GO:0009767,GO:0009773,GO:0009987,GO:0010033,GO:0010319,GO:0015979,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0019318,GO:0019319,GO:0019637,GO:0019684,GO:0022900,GO:0030388,GO:0031967,GO:0031975,GO:0034637,GO:0042132,GO:0042221,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046351,GO:0046364,GO:0048046,GO:0050308,GO:0050896,GO:0055114,GO:0071704,GO:1901135,GO:1901576
Evalue4.99e-172
EggNOG OGsCOG0158@1|root,KOG1458@2759|Eukaryota
EC3.1.3.11
Descriptionfructose 1,6-bisphosphate 1-phosphatase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3640Gcaud3640Gracilaria caudata M_176_S67 malegeneNODE_120_length_47600_cov_4.363763 16687..17769 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3640.t1.stop1Gcaud3640.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_120_length_47600_cov_4.363763 16687..16689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3640.t1.CDS1Gcaud3640.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_120_length_47600_cov_4.363763 16687..17769 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3640.t1.exon1Gcaud3640.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_120_length_47600_cov_4.363763 16687..17769 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3640.t1.start1Gcaud3640.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_120_length_47600_cov_4.363763 17767..17769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3640.t1Gcaud3640.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_120_length_47600_cov_4.363763 16687..17769 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3640.t1 ID=Gcaud3640.t1|Name=Gcaud3640.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=361bp
MVVAPPTQSVHSDTSPMTLTRYMIQTAMDNTDLEHMQDMQSLMSSIQLAC
KKIASLVQRAGITNLTGYQEDGSINVQGEEQKKLDVLSNEVLKNALRYSG
KMGVIASEEEDEPVMVDEVYSGNYVAVFDPLDGSSNIDAGIATGTIFGIF
VQNTGCLASDWESKIDETELTCLYNTMQPGANLVAAGYCMYSSSVMMVLT
TGHGVNGFTLDPQIGEFILTHPDMKIPTRGKIYSFNEANSPAWDPVLKEY
VQKLKTGDNKAGVKYSSRYIGSLVADVHRTLLYGGVFGYPGDQKNPNGKL
RLLYECAPMSFIVEQAGGLATTGKERVMDVIPNTVHQRMPLIIGSKDDVQ
ELLDMYNENK*
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spliced messenger RNA

>Gcaud3640.t1 ID=Gcaud3640.t1|Name=Gcaud3640.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:16687..17769- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGTTGCCCCGCCTACCCAGAGCGTGCATTCCGACACATCGCCTAT
GACTCTTACGCGCTACATGATTCAGACTGCCATGGATAATACTGACTTGG
AGCATATGCAAGACATGCAGTCGCTTATGTCGTCTATTCAACTCGCGTGC
AAGAAAATTGCTTCGCTTGTGCAGCGGGCTGGAATTACGAACTTGACTGG
CTATCAAGAGGATGGCTCGATCAACGTGCAAGGCGAAGAACAGAAGAAAC
TTGACGTTTTGTCTAATGAGGTGCTGAAGAACGCTTTGCGCTATTCTGGG
AAAATGGGCGTAATTGCGTCAGAAGAGGAGGATGAGCCGGTCATGGTCGA
CGAGGTGTACTCTGGAAACTATGTCGCTGTGTTCGATCCGCTTGACGGAA
GCTCCAACATCGATGCTGGAATTGCTACCGGTACTATTTTTGGGATCTTC
GTACAAAACACTGGTTGTTTGGCCTCTGACTGGGAGTCCAAGATTGACGA
GACCGAACTAACATGCTTGTACAACACTATGCAACCAGGCGCTAATCTCG
TTGCTGCGGGCTACTGCATGTACTCCTCATCTGTAATGATGGTGCTTACC
ACCGGACATGGTGTCAATGGGTTCACACTAGACCCGCAAATCGGCGAGTT
TATTCTTACGCACCCAGATATGAAGATCCCAACACGTGGAAAGATCTATT
CTTTCAACGAAGCCAATTCCCCAGCTTGGGATCCCGTCTTGAAAGAATAT
GTTCAAAAGTTGAAGACTGGTGACAACAAAGCTGGTGTCAAGTACTCATC
GAGATACATTGGCAGTTTAGTTGCCGATGTGCACCGTACCCTGTTATATG
GTGGTGTGTTTGGATATCCTGGAGACCAAAAGAACCCGAATGGAAAACTG
AGACTCTTGTACGAATGCGCGCCAATGTCTTTCATCGTTGAACAGGCCGG
TGGACTTGCTACGACCGGAAAGGAACGCGTCATGGACGTTATTCCAAACA
CTGTGCATCAACGTATGCCGCTTATTATAGGTAGTAAGGATGACGTGCAA
GAGTTGTTGGACATGTATAACGAGAATAAGTAG
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protein sequence of Gcaud3640.t1

>Gcaud3640.t1 ID=Gcaud3640.t1|Name=Gcaud3640.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=361bp
MVVAPPTQSVHSDTSPMTLTRYMIQTAMDNTDLEHMQDMQSLMSSIQLAC
KKIASLVQRAGITNLTGYQEDGSINVQGEEQKKLDVLSNEVLKNALRYSG
KMGVIASEEEDEPVMVDEVYSGNYVAVFDPLDGSSNIDAGIATGTIFGIF
VQNTGCLASDWESKIDETELTCLYNTMQPGANLVAAGYCMYSSSVMMVLT
TGHGVNGFTLDPQIGEFILTHPDMKIPTRGKIYSFNEANSPAWDPVLKEY
VQKLKTGDNKAGVKYSSRYIGSLVADVHRTLLYGGVFGYPGDQKNPNGKL
RLLYECAPMSFIVEQAGGLATTGKERVMDVIPNTVHQRMPLIIGSKDDVQ
ELLDMYNENK*
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mRNA from alignment at NODE_120_length_47600_cov_4.363763:16687..17769-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3640.t1 ID=Gcaud3640.t1|Name=Gcaud3640.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:16687..17769- (Gracilaria caudata M_176_S67 male)
ATGGTCGTTGCCCCGCCTACCCAGAGCGTGCATTCCGACACATCGCCTAT
GACTCTTACGCGCTACATGATTCAGACTGCCATGGATAATACTGACTTGG
AGCATATGCAAGACATGCAGTCGCTTATGTCGTCTATTCAACTCGCGTGC
AAGAAAATTGCTTCGCTTGTGCAGCGGGCTGGAATTACGAACTTGACTGG
CTATCAAGAGGATGGCTCGATCAACGTGCAAGGCGAAGAACAGAAGAAAC
TTGACGTTTTGTCTAATGAGGTGCTGAAGAACGCTTTGCGCTATTCTGGG
AAAATGGGCGTAATTGCGTCAGAAGAGGAGGATGAGCCGGTCATGGTCGA
CGAGGTGTACTCTGGAAACTATGTCGCTGTGTTCGATCCGCTTGACGGAA
GCTCCAACATCGATGCTGGAATTGCTACCGGTACTATTTTTGGGATCTTC
GTACAAAACACTGGTTGTTTGGCCTCTGACTGGGAGTCCAAGATTGACGA
GACCGAACTAACATGCTTGTACAACACTATGCAACCAGGCGCTAATCTCG
TTGCTGCGGGCTACTGCATGTACTCCTCATCTGTAATGATGGTGCTTACC
ACCGGACATGGTGTCAATGGGTTCACACTAGACCCGCAAATCGGCGAGTT
TATTCTTACGCACCCAGATATGAAGATCCCAACACGTGGAAAGATCTATT
CTTTCAACGAAGCCAATTCCCCAGCTTGGGATCCCGTCTTGAAAGAATAT
GTTCAAAAGTTGAAGACTGGTGACAACAAAGCTGGTGTCAAGTACTCATC
GAGATACATTGGCAGTTTAGTTGCCGATGTGCACCGTACCCTGTTATATG
GTGGTGTGTTTGGATATCCTGGAGACCAAAAGAACCCGAATGGAAAACTG
AGACTCTTGTACGAATGCGCGCCAATGTCTTTCATCGTTGAACAGGCCGG
TGGACTTGCTACGACCGGAAAGGAACGCGTCATGGACGTTATTCCAAACA
CTGTGCATCAACGTATGCCGCTTATTATAGGTAGTAAGGATGACGTGCAA
GAGTTGTTGGACATGTATAACGAGAATAAGTAG
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Coding sequence (CDS) from alignment at NODE_120_length_47600_cov_4.363763:16687..17769-

>Gcaud3640.t1 ID=Gcaud3640.t1|Name=Gcaud3640.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1083bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:16687..17769- (Gracilaria caudata M_176_S67 male)
ATGGTCGTTGCCCCGCCTACCCAGAGCGTGCATTCCGACACATCGCCTAT
GACTCTTACGCGCTACATGATTCAGACTGCCATGGATAATACTGACTTGG
AGCATATGCAAGACATGCAGTCGCTTATGTCGTCTATTCAACTCGCGTGC
AAGAAAATTGCTTCGCTTGTGCAGCGGGCTGGAATTACGAACTTGACTGG
CTATCAAGAGGATGGCTCGATCAACGTGCAAGGCGAAGAACAGAAGAAAC
TTGACGTTTTGTCTAATGAGGTGCTGAAGAACGCTTTGCGCTATTCTGGG
AAAATGGGCGTAATTGCGTCAGAAGAGGAGGATGAGCCGGTCATGGTCGA
CGAGGTGTACTCTGGAAACTATGTCGCTGTGTTCGATCCGCTTGACGGAA
GCTCCAACATCGATGCTGGAATTGCTACCGGTACTATTTTTGGGATCTTC
GTACAAAACACTGGTTGTTTGGCCTCTGACTGGGAGTCCAAGATTGACGA
GACCGAACTAACATGCTTGTACAACACTATGCAACCAGGCGCTAATCTCG
TTGCTGCGGGCTACTGCATGTACTCCTCATCTGTAATGATGGTGCTTACC
ACCGGACATGGTGTCAATGGGTTCACACTAGACCCGCAAATCGGCGAGTT
TATTCTTACGCACCCAGATATGAAGATCCCAACACGTGGAAAGATCTATT
CTTTCAACGAAGCCAATTCCCCAGCTTGGGATCCCGTCTTGAAAGAATAT
GTTCAAAAGTTGAAGACTGGTGACAACAAAGCTGGTGTCAAGTACTCATC
GAGATACATTGGCAGTTTAGTTGCCGATGTGCACCGTACCCTGTTATATG
GTGGTGTGTTTGGATATCCTGGAGACCAAAAGAACCCGAATGGAAAACTG
AGACTCTTGTACGAATGCGCGCCAATGTCTTTCATCGTTGAACAGGCCGG
TGGACTTGCTACGACCGGAAAGGAACGCGTCATGGACGTTATTCCAAACA
CTGTGCATCAACGTATGCCGCTTATTATAGGTAGTAAGGATGACGTGCAA
GAGTTGTTGGACATGTATAACGAGAATAAGTAG
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