Gcaud3639.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3639.t1
Unique Name	Gcaud3639.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	463

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_120_length_47600_cov_4.363763	contig	NODE_120_length_47600_cov_4.363763:14304..15692 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704711.1
Preferred name	SAM50
PFAMs	Bac_surface_Ag,POTRA
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K07277
KEGG TC	1.B.33
GOs	GO:0001401,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019867,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042407,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045040,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098573,GO:0098588,GO:0098796,GO:0098798,GO:0098799,GO:0098805
Evalue	1e-62
EggNOG OGs	COG4775@1\|root,KOG2602@2759\|Eukaryota
Description	sorting and assembly machinery component
COG category	M
BRITE	ko00000,ko02000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3639	Gcaud3639	Gracilaria caudata M_176_S67 male	gene	NODE_120_length_47600_cov_4.363763 14304..15692 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3639.t1.start1	Gcaud3639.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_120_length_47600_cov_4.363763 14304..14306 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3639.t1.CDS1	Gcaud3639.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_120_length_47600_cov_4.363763 14304..15692 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3639.t1.exon1	Gcaud3639.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_120_length_47600_cov_4.363763 14304..15692 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3639.t1.stop1	Gcaud3639.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_120_length_47600_cov_4.363763 15690..15692 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3639.t1	Gcaud3639.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_120_length_47600_cov_4.363763 14304..15692 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_120_length_47600_cov_4.363763:14304..15692+
coding sequence from alignment at NODE_120_length_47600_cov_4.363763:14304..15692+

mRNA sequence

>Gcaud3639.t1 ID=Gcaud3639.t1|Name=Gcaud3639.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=463bp
MSDPSASSPVVQPSIEELLAAKLSITSYSIHGVNRTKEKLIHKVLQPVLS
TGGDFEGVINDVSTAVDRLRSTNCYKGIDAFIDHQHDKTASVRFTFTEKS
SVQLTTGTSIDTSSERDASMDGTLSIRNLFGAADTLRFTLAWIGATSASR
SFSKNPSNSFSATYNRPFVLGLNSSMFSNASYSQLNHSEASSYNLVTRLA
DCGLHTVLGTFTLASVWRNLTHVQPTASALIRDDAKHTWKTSLRHRVEFD
LRDNMVMPNQGIYASLTHEHTLPFGDIRLSTVETAFQSHFPLVAGAVLSL
SSRLGAHFSTSRVQTPDRFFIGGANSLRGFRTRGVGPMDGKDSIGGDVYY
TTGLMLSLPMPDNSLLSQLFNARLHMFLNGGDVCEMTDMKQAIGELKGNG
LQEAATKALEGIYGGVRVAGGVGVAFDTSVGRIELNLCNVLKSSVSDQPQ
VGFQFGVSQSFL*

spliced messenger RNA

>Gcaud3639.t1 ID=Gcaud3639.t1|Name=Gcaud3639.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:14304..15692+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGATCCATCGGCATCCTCACCAGTTGTGCAACCTTCAATTGAAGA
ACTTTTGGCAGCAAAACTTTCAATCACATCCTACTCTATTCATGGCGTTA
ATCGAACCAAAGAAAAGCTCATCCACAAGGTCTTGCAACCGGTTTTATCA
ACTGGGGGCGATTTTGAAGGCGTCATAAACGACGTTTCTACTGCCGTGGA
TCGATTGAGATCGACAAATTGCTACAAGGGAATCGATGCATTCATTGATC
ATCAACATGATAAGACCGCCTCCGTCAGGTTCACTTTCACTGAGAAGTCT
TCTGTGCAACTTACCACAGGTACTTCGATTGACACATCCAGCGAACGGGA
TGCTTCAATGGACGGAACCTTGAGCATTCGAAACTTGTTTGGCGCTGCTG
ATACACTTCGTTTTACACTGGCTTGGATTGGTGCGACGTCTGCGTCAAGA
TCATTTTCGAAAAACCCCTCCAACTCGTTTAGTGCAACGTATAATCGACC
GTTCGTGCTTGGTTTGAACTCTTCCATGTTTTCAAACGCTTCGTATTCAC
AGCTGAATCATTCCGAAGCTTCTAGCTACAATCTAGTCACCAGACTTGCC
GATTGTGGCCTACACACCGTTTTAGGAACCTTTACGTTAGCCTCCGTATG
GAGAAATCTCACCCATGTTCAACCAACCGCTTCCGCTCTCATTCGAGATG
ATGCGAAGCACACATGGAAGACTTCTCTAAGACATCGCGTGGAATTTGAT
TTGAGAGACAACATGGTGATGCCAAATCAAGGTATATATGCGTCCTTGAC
ACATGAACATACTTTGCCATTTGGGGACATTCGGCTATCAACCGTGGAGA
CAGCCTTTCAATCACATTTTCCGTTGGTTGCTGGTGCCGTTTTGTCGCTT
TCCTCACGTCTTGGCGCCCATTTTTCAACAAGTCGTGTGCAAACTCCCGA
TCGTTTCTTTATAGGTGGTGCCAACTCCTTACGTGGATTTAGAACAAGGG
GTGTCGGGCCGATGGACGGAAAGGATTCTATTGGAGGTGATGTGTATTAC
ACAACAGGTTTGATGTTATCACTCCCAATGCCGGACAATTCGCTACTGTC
GCAGTTGTTCAACGCGAGATTACATATGTTTTTGAATGGAGGCGATGTCT
GTGAAATGACTGACATGAAACAAGCAATTGGTGAGTTGAAGGGTAATGGA
TTGCAAGAAGCTGCTACGAAGGCTTTGGAAGGAATTTATGGTGGAGTAAG
GGTTGCTGGTGGTGTGGGTGTGGCATTTGATACTTCCGTTGGACGAATTG
AACTTAACCTTTGCAATGTGCTTAAGAGTTCTGTTTCTGACCAACCTCAG
GTTGGCTTTCAGTTTGGAGTCAGCCAATCTTTCTTGTAG

protein sequence of Gcaud3639.t1

>Gcaud3639.t1 ID=Gcaud3639.t1|Name=Gcaud3639.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=463bp
MSDPSASSPVVQPSIEELLAAKLSITSYSIHGVNRTKEKLIHKVLQPVLS
TGGDFEGVINDVSTAVDRLRSTNCYKGIDAFIDHQHDKTASVRFTFTEKS
SVQLTTGTSIDTSSERDASMDGTLSIRNLFGAADTLRFTLAWIGATSASR
SFSKNPSNSFSATYNRPFVLGLNSSMFSNASYSQLNHSEASSYNLVTRLA
DCGLHTVLGTFTLASVWRNLTHVQPTASALIRDDAKHTWKTSLRHRVEFD
LRDNMVMPNQGIYASLTHEHTLPFGDIRLSTVETAFQSHFPLVAGAVLSL
SSRLGAHFSTSRVQTPDRFFIGGANSLRGFRTRGVGPMDGKDSIGGDVYY
TTGLMLSLPMPDNSLLSQLFNARLHMFLNGGDVCEMTDMKQAIGELKGNG
LQEAATKALEGIYGGVRVAGGVGVAFDTSVGRIELNLCNVLKSSVSDQPQ
VGFQFGVSQSFL*

mRNA from alignment at NODE_120_length_47600_cov_4.363763:14304..15692+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3639.t1 ID=Gcaud3639.t1|Name=Gcaud3639.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:14304..15692+ (Gracilaria caudata M_176_S67 male)
ATGAGCGATCCATCGGCATCCTCACCAGTTGTGCAACCTTCAATTGAAGA
ACTTTTGGCAGCAAAACTTTCAATCACATCCTACTCTATTCATGGCGTTA
ATCGAACCAAAGAAAAGCTCATCCACAAGGTCTTGCAACCGGTTTTATCA
ACTGGGGGCGATTTTGAAGGCGTCATAAACGACGTTTCTACTGCCGTGGA
TCGATTGAGATCGACAAATTGCTACAAGGGAATCGATGCATTCATTGATC
ATCAACATGATAAGACCGCCTCCGTCAGGTTCACTTTCACTGAGAAGTCT
TCTGTGCAACTTACCACAGGTACTTCGATTGACACATCCAGCGAACGGGA
TGCTTCAATGGACGGAACCTTGAGCATTCGAAACTTGTTTGGCGCTGCTG
ATACACTTCGTTTTACACTGGCTTGGATTGGTGCGACGTCTGCGTCAAGA
TCATTTTCGAAAAACCCCTCCAACTCGTTTAGTGCAACGTATAATCGACC
GTTCGTGCTTGGTTTGAACTCTTCCATGTTTTCAAACGCTTCGTATTCAC
AGCTGAATCATTCCGAAGCTTCTAGCTACAATCTAGTCACCAGACTTGCC
GATTGTGGCCTACACACCGTTTTAGGAACCTTTACGTTAGCCTCCGTATG
GAGAAATCTCACCCATGTTCAACCAACCGCTTCCGCTCTCATTCGAGATG
ATGCGAAGCACACATGGAAGACTTCTCTAAGACATCGCGTGGAATTTGAT
TTGAGAGACAACATGGTGATGCCAAATCAAGGTATATATGCGTCCTTGAC
ACATGAACATACTTTGCCATTTGGGGACATTCGGCTATCAACCGTGGAGA
CAGCCTTTCAATCACATTTTCCGTTGGTTGCTGGTGCCGTTTTGTCGCTT
TCCTCACGTCTTGGCGCCCATTTTTCAACAAGTCGTGTGCAAACTCCCGA
TCGTTTCTTTATAGGTGGTGCCAACTCCTTACGTGGATTTAGAACAAGGG
GTGTCGGGCCGATGGACGGAAAGGATTCTATTGGAGGTGATGTGTATTAC
ACAACAGGTTTGATGTTATCACTCCCAATGCCGGACAATTCGCTACTGTC
GCAGTTGTTCAACGCGAGATTACATATGTTTTTGAATGGAGGCGATGTCT
GTGAAATGACTGACATGAAACAAGCAATTGGTGAGTTGAAGGGTAATGGA
TTGCAAGAAGCTGCTACGAAGGCTTTGGAAGGAATTTATGGTGGAGTAAG
GGTTGCTGGTGGTGTGGGTGTGGCATTTGATACTTCCGTTGGACGAATTG
AACTTAACCTTTGCAATGTGCTTAAGAGTTCTGTTTCTGACCAACCTCAG
GTTGGCTTTCAGTTTGGAGTCAGCCAATCTTTCTTGTAG

Coding sequence (CDS) from alignment at NODE_120_length_47600_cov_4.363763:14304..15692+

>Gcaud3639.t1 ID=Gcaud3639.t1|Name=Gcaud3639.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1389bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:14304..15692+ (Gracilaria caudata M_176_S67 male)
ATGAGCGATCCATCGGCATCCTCACCAGTTGTGCAACCTTCAATTGAAGA
ACTTTTGGCAGCAAAACTTTCAATCACATCCTACTCTATTCATGGCGTTA
ATCGAACCAAAGAAAAGCTCATCCACAAGGTCTTGCAACCGGTTTTATCA
ACTGGGGGCGATTTTGAAGGCGTCATAAACGACGTTTCTACTGCCGTGGA
TCGATTGAGATCGACAAATTGCTACAAGGGAATCGATGCATTCATTGATC
ATCAACATGATAAGACCGCCTCCGTCAGGTTCACTTTCACTGAGAAGTCT
TCTGTGCAACTTACCACAGGTACTTCGATTGACACATCCAGCGAACGGGA
TGCTTCAATGGACGGAACCTTGAGCATTCGAAACTTGTTTGGCGCTGCTG
ATACACTTCGTTTTACACTGGCTTGGATTGGTGCGACGTCTGCGTCAAGA
TCATTTTCGAAAAACCCCTCCAACTCGTTTAGTGCAACGTATAATCGACC
GTTCGTGCTTGGTTTGAACTCTTCCATGTTTTCAAACGCTTCGTATTCAC
AGCTGAATCATTCCGAAGCTTCTAGCTACAATCTAGTCACCAGACTTGCC
GATTGTGGCCTACACACCGTTTTAGGAACCTTTACGTTAGCCTCCGTATG
GAGAAATCTCACCCATGTTCAACCAACCGCTTCCGCTCTCATTCGAGATG
ATGCGAAGCACACATGGAAGACTTCTCTAAGACATCGCGTGGAATTTGAT
TTGAGAGACAACATGGTGATGCCAAATCAAGGTATATATGCGTCCTTGAC
ACATGAACATACTTTGCCATTTGGGGACATTCGGCTATCAACCGTGGAGA
CAGCCTTTCAATCACATTTTCCGTTGGTTGCTGGTGCCGTTTTGTCGCTT
TCCTCACGTCTTGGCGCCCATTTTTCAACAAGTCGTGTGCAAACTCCCGA
TCGTTTCTTTATAGGTGGTGCCAACTCCTTACGTGGATTTAGAACAAGGG
GTGTCGGGCCGATGGACGGAAAGGATTCTATTGGAGGTGATGTGTATTAC
ACAACAGGTTTGATGTTATCACTCCCAATGCCGGACAATTCGCTACTGTC
GCAGTTGTTCAACGCGAGATTACATATGTTTTTGAATGGAGGCGATGTCT
GTGAAATGACTGACATGAAACAAGCAATTGGTGAGTTGAAGGGTAATGGA
TTGCAAGAAGCTGCTACGAAGGCTTTGGAAGGAATTTATGGTGGAGTAAG
GGTTGCTGGTGGTGTGGGTGTGGCATTTGATACTTCCGTTGGACGAATTG
AACTTAACCTTTGCAATGTGCTTAAGAGTTCTGTTTCTGACCAACCTCAG
GTTGGCTTTCAGTTTGGAGTCAGCCAATCTTTCTTGTAG