Gcaud3635.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3635.t1
Unique Name	Gcaud3635.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	451

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_120_length_47600_cov_4.363763	contig	NODE_120_length_47600_cov_4.363763:8386..9738 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707262.1
PFAMs	NPL4,UN_NPL4
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14015
KEGG Pathway	ko04141,map04141
KEGG Module	M00400,M00403
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0016020,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0030433,GO:0031625,GO:0032182,GO:0033554,GO:0034976,GO:0036503,GO:0042175,GO:0042221,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051603,GO:0051716,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901698
Evalue	2.47e-97
EggNOG OGs	COG5100@1\|root,KOG2834@2759\|Eukaryota
Description	modification-dependent protein catabolic process
COG category	Y
BRITE	ko00000,ko00001,ko00002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3635	Gcaud3635	Gracilaria caudata M_176_S67 male	gene	NODE_120_length_47600_cov_4.363763 8386..9738 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3635.t1.stop1	Gcaud3635.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_120_length_47600_cov_4.363763 8386..8388 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3635.t1.CDS1	Gcaud3635.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_120_length_47600_cov_4.363763 8386..9738 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3635.t1.exon1	Gcaud3635.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_120_length_47600_cov_4.363763 8386..9738 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3635.t1.start1	Gcaud3635.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_120_length_47600_cov_4.363763 9736..9738 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3635.t1	Gcaud3635.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_120_length_47600_cov_4.363763 8386..9738 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_120_length_47600_cov_4.363763:8386..9738-
coding sequence from alignment at NODE_120_length_47600_cov_4.363763:8386..9738-

mRNA sequence

>Gcaud3635.t1 ID=Gcaud3635.t1|Name=Gcaud3635.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=451bp
MILRVRLPNGATERVTLDQGETLQDLGAKIEALDKMEGQFALYSDVRFTQ
PFVFENARHGDIIFIKGVAKPTAPSKPQASLSPQSSAPELQPPSASSAAT
ANNAGSEQTAAWRPPCRHGPRGMCEHCMPKEDKRKRYENELAKWKGRGMS
VAVMEALEALKTKITAQAEAHATAVLVDNKAAEQFQAYIARTGFQQQRVG
ICYGDVTDNGETRVLAIYEPPQSGSDQCYKLDDEGDMTQRADTVAQLLGL
QRVGIVFSARPRKCILSGMDVVFAARMAKQLTDEQKKSFVVMVVTTAETG
ETLFEAYQISDLAMQLYVDGIFEEQDQQKPNSGRVLCKEDVLVEGKDVRK
VHTEFFLLNIPIKSCDSWLRTAFAVENRDLSPQGPSDLKKILADNELSYT
QRLTDFHALLFLSNMFDMNTDMPGLLSSIKEGQDIGEGFRLMIDGMASSS
*

spliced messenger RNA

>Gcaud3635.t1 ID=Gcaud3635.t1|Name=Gcaud3635.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:8386..9738- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTTGCGAGTTCGACTTCCAAATGGCGCCACAGAGCGGGTCACCCT
TGATCAGGGTGAAACCCTACAGGATCTCGGCGCCAAGATCGAGGCATTAG
ACAAGATGGAAGGCCAATTCGCGCTCTACTCAGACGTCCGCTTCACCCAA
CCCTTTGTCTTCGAGAATGCACGTCATGGAGACATTATCTTCATAAAAGG
CGTCGCAAAGCCTACCGCTCCCTCTAAACCACAAGCTTCACTCTCACCAC
AGTCCTCCGCACCAGAGCTGCAGCCTCCTTCTGCGTCAAGCGCCGCCACA
GCCAACAACGCTGGAAGCGAGCAGACAGCTGCGTGGCGACCGCCATGCCG
ACACGGTCCGCGCGGAATGTGCGAACACTGCATGCCAAAGGAGGACAAAC
GCAAGCGATATGAAAACGAGCTTGCCAAGTGGAAGGGACGCGGTATGAGC
GTCGCAGTTATGGAGGCGTTAGAAGCCCTGAAAACTAAGATCACAGCCCA
AGCCGAAGCTCATGCCACTGCCGTCTTAGTGGATAACAAGGCCGCCGAAC
AGTTTCAGGCCTACATTGCGCGCACAGGATTCCAACAGCAGCGAGTTGGT
ATTTGTTACGGTGATGTAACAGATAACGGCGAAACGCGCGTATTAGCTAT
CTATGAGCCTCCCCAAAGCGGCTCAGACCAATGCTACAAGCTGGACGACG
AGGGTGATATGACTCAGAGGGCAGATACTGTTGCTCAGCTGCTGGGGTTA
CAAAGGGTGGGCATCGTGTTTTCAGCCCGGCCTAGAAAGTGTATTTTATC
CGGGATGGACGTCGTTTTCGCTGCACGTATGGCTAAACAACTCACGGATG
AACAAAAGAAATCATTTGTCGTCATGGTTGTCACGACAGCAGAGACTGGG
GAAACTCTATTCGAAGCCTACCAAATATCTGATCTCGCGATGCAGTTGTA
TGTGGACGGTATATTTGAAGAACAGGACCAGCAAAAGCCCAACTCTGGAC
GCGTGTTGTGCAAGGAGGATGTATTGGTTGAAGGAAAGGACGTGCGGAAA
GTGCACACAGAGTTCTTTCTGCTTAACATTCCAATCAAGAGTTGCGACAG
CTGGCTGCGAACTGCTTTCGCGGTTGAAAATCGGGATCTTTCACCGCAGG
GCCCATCAGACCTCAAAAAGATTCTCGCCGATAACGAATTGTCATATACG
CAAAGGCTCACTGACTTCCACGCCCTGCTCTTCTTGTCCAACATGTTCGA
CATGAACACAGACATGCCGGGACTTTTGTCGTCTATCAAAGAAGGCCAAG
ATATTGGTGAGGGATTCCGACTTATGATCGACGGTATGGCCTCATCATCC
TGA

protein sequence of Gcaud3635.t1

>Gcaud3635.t1 ID=Gcaud3635.t1|Name=Gcaud3635.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=451bp
MILRVRLPNGATERVTLDQGETLQDLGAKIEALDKMEGQFALYSDVRFTQ
PFVFENARHGDIIFIKGVAKPTAPSKPQASLSPQSSAPELQPPSASSAAT
ANNAGSEQTAAWRPPCRHGPRGMCEHCMPKEDKRKRYENELAKWKGRGMS
VAVMEALEALKTKITAQAEAHATAVLVDNKAAEQFQAYIARTGFQQQRVG
ICYGDVTDNGETRVLAIYEPPQSGSDQCYKLDDEGDMTQRADTVAQLLGL
QRVGIVFSARPRKCILSGMDVVFAARMAKQLTDEQKKSFVVMVVTTAETG
ETLFEAYQISDLAMQLYVDGIFEEQDQQKPNSGRVLCKEDVLVEGKDVRK
VHTEFFLLNIPIKSCDSWLRTAFAVENRDLSPQGPSDLKKILADNELSYT
QRLTDFHALLFLSNMFDMNTDMPGLLSSIKEGQDIGEGFRLMIDGMASSS
*

mRNA from alignment at NODE_120_length_47600_cov_4.363763:8386..9738-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3635.t1 ID=Gcaud3635.t1|Name=Gcaud3635.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:8386..9738- (Gracilaria caudata M_176_S67 male)
ATGATTTTGCGAGTTCGACTTCCAAATGGCGCCACAGAGCGGGTCACCCT
TGATCAGGGTGAAACCCTACAGGATCTCGGCGCCAAGATCGAGGCATTAG
ACAAGATGGAAGGCCAATTCGCGCTCTACTCAGACGTCCGCTTCACCCAA
CCCTTTGTCTTCGAGAATGCACGTCATGGAGACATTATCTTCATAAAAGG
CGTCGCAAAGCCTACCGCTCCCTCTAAACCACAAGCTTCACTCTCACCAC
AGTCCTCCGCACCAGAGCTGCAGCCTCCTTCTGCGTCAAGCGCCGCCACA
GCCAACAACGCTGGAAGCGAGCAGACAGCTGCGTGGCGACCGCCATGCCG
ACACGGTCCGCGCGGAATGTGCGAACACTGCATGCCAAAGGAGGACAAAC
GCAAGCGATATGAAAACGAGCTTGCCAAGTGGAAGGGACGCGGTATGAGC
GTCGCAGTTATGGAGGCGTTAGAAGCCCTGAAAACTAAGATCACAGCCCA
AGCCGAAGCTCATGCCACTGCCGTCTTAGTGGATAACAAGGCCGCCGAAC
AGTTTCAGGCCTACATTGCGCGCACAGGATTCCAACAGCAGCGAGTTGGT
ATTTGTTACGGTGATGTAACAGATAACGGCGAAACGCGCGTATTAGCTAT
CTATGAGCCTCCCCAAAGCGGCTCAGACCAATGCTACAAGCTGGACGACG
AGGGTGATATGACTCAGAGGGCAGATACTGTTGCTCAGCTGCTGGGGTTA
CAAAGGGTGGGCATCGTGTTTTCAGCCCGGCCTAGAAAGTGTATTTTATC
CGGGATGGACGTCGTTTTCGCTGCACGTATGGCTAAACAACTCACGGATG
AACAAAAGAAATCATTTGTCGTCATGGTTGTCACGACAGCAGAGACTGGG
GAAACTCTATTCGAAGCCTACCAAATATCTGATCTCGCGATGCAGTTGTA
TGTGGACGGTATATTTGAAGAACAGGACCAGCAAAAGCCCAACTCTGGAC
GCGTGTTGTGCAAGGAGGATGTATTGGTTGAAGGAAAGGACGTGCGGAAA
GTGCACACAGAGTTCTTTCTGCTTAACATTCCAATCAAGAGTTGCGACAG
CTGGCTGCGAACTGCTTTCGCGGTTGAAAATCGGGATCTTTCACCGCAGG
GCCCATCAGACCTCAAAAAGATTCTCGCCGATAACGAATTGTCATATACG
CAAAGGCTCACTGACTTCCACGCCCTGCTCTTCTTGTCCAACATGTTCGA
CATGAACACAGACATGCCGGGACTTTTGTCGTCTATCAAAGAAGGCCAAG
ATATTGGTGAGGGATTCCGACTTATGATCGACGGTATGGCCTCATCATCC
TGA

Coding sequence (CDS) from alignment at NODE_120_length_47600_cov_4.363763:8386..9738-

>Gcaud3635.t1 ID=Gcaud3635.t1|Name=Gcaud3635.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1353bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:8386..9738- (Gracilaria caudata M_176_S67 male)
ATGATTTTGCGAGTTCGACTTCCAAATGGCGCCACAGAGCGGGTCACCCT
TGATCAGGGTGAAACCCTACAGGATCTCGGCGCCAAGATCGAGGCATTAG
ACAAGATGGAAGGCCAATTCGCGCTCTACTCAGACGTCCGCTTCACCCAA
CCCTTTGTCTTCGAGAATGCACGTCATGGAGACATTATCTTCATAAAAGG
CGTCGCAAAGCCTACCGCTCCCTCTAAACCACAAGCTTCACTCTCACCAC
AGTCCTCCGCACCAGAGCTGCAGCCTCCTTCTGCGTCAAGCGCCGCCACA
GCCAACAACGCTGGAAGCGAGCAGACAGCTGCGTGGCGACCGCCATGCCG
ACACGGTCCGCGCGGAATGTGCGAACACTGCATGCCAAAGGAGGACAAAC
GCAAGCGATATGAAAACGAGCTTGCCAAGTGGAAGGGACGCGGTATGAGC
GTCGCAGTTATGGAGGCGTTAGAAGCCCTGAAAACTAAGATCACAGCCCA
AGCCGAAGCTCATGCCACTGCCGTCTTAGTGGATAACAAGGCCGCCGAAC
AGTTTCAGGCCTACATTGCGCGCACAGGATTCCAACAGCAGCGAGTTGGT
ATTTGTTACGGTGATGTAACAGATAACGGCGAAACGCGCGTATTAGCTAT
CTATGAGCCTCCCCAAAGCGGCTCAGACCAATGCTACAAGCTGGACGACG
AGGGTGATATGACTCAGAGGGCAGATACTGTTGCTCAGCTGCTGGGGTTA
CAAAGGGTGGGCATCGTGTTTTCAGCCCGGCCTAGAAAGTGTATTTTATC
CGGGATGGACGTCGTTTTCGCTGCACGTATGGCTAAACAACTCACGGATG
AACAAAAGAAATCATTTGTCGTCATGGTTGTCACGACAGCAGAGACTGGG
GAAACTCTATTCGAAGCCTACCAAATATCTGATCTCGCGATGCAGTTGTA
TGTGGACGGTATATTTGAAGAACAGGACCAGCAAAAGCCCAACTCTGGAC
GCGTGTTGTGCAAGGAGGATGTATTGGTTGAAGGAAAGGACGTGCGGAAA
GTGCACACAGAGTTCTTTCTGCTTAACATTCCAATCAAGAGTTGCGACAG
CTGGCTGCGAACTGCTTTCGCGGTTGAAAATCGGGATCTTTCACCGCAGG
GCCCATCAGACCTCAAAAAGATTCTCGCCGATAACGAATTGTCATATACG
CAAAGGCTCACTGACTTCCACGCCCTGCTCTTCTTGTCCAACATGTTCGA
CATGAACACAGACATGCCGGGACTTTTGTCGTCTATCAAAGAAGGCCAAG
ATATTGGTGAGGGATTCCGACTTATGATCGACGGTATGGCCTCATCATCC
TGA