Gcaud3633.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3633.t1
Unique Name	Gcaud3633.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	223

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_120_length_47600_cov_4.363763	contig	NODE_120_length_47600_cov_4.363763:2378..3046 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	144197.XP_008286718.1
Preferred name	spon1
PFAMs	Kunitz_BPTI,Reeler,Spond_N,TSP_1
Max annot lvl	33208\|Metazoa
GOs	GO:0000902,GO:0000904,GO:0005575,GO:0005576,GO:0005604,GO:0005622,GO:0005623,GO:0005737,GO:0006928,GO:0006935,GO:0007155,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007413,GO:0007517,GO:0008037,GO:0008038,GO:0008045,GO:0008150,GO:0009605,GO:0009653,GO:0009987,GO:0016043,GO:0016203,GO:0022008,GO:0022610,GO:0030016,GO:0030017,GO:0030030,GO:0030154,GO:0030182,GO:0031012,GO:0031175,GO:0031430,GO:0031672,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0033563,GO:0033627,GO:0040011,GO:0042221,GO:0042330,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043292,GO:0044421,GO:0044422,GO:0044424,GO:0044444,GO:0044449,GO:0044464,GO:0048468,GO:0048513,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050896,GO:0055120,GO:0060538,GO:0061061,GO:0061564,GO:0062023,GO:0071840,GO:0097485,GO:0099080,GO:0099081,GO:0099512,GO:0106030,GO:0120036,GO:0120039
Evalue	8.59e-15
EggNOG OGs	KOG3539@1\|root,KOG3539@2759\|Eukaryota,38FW7@33154\|Opisthokonta,3BEQ3@33208\|Metazoa,3CYKJ@33213\|Bilateria,4831B@7711\|Chordata,4945E@7742\|Vertebrata,49UY2@7898\|Actinopterygii
Description	Spondin 1a
COG category	W

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3633	Gcaud3633	Gracilaria caudata M_176_S67 male	gene	NODE_120_length_47600_cov_4.363763 2378..3046 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3633.t1.start1	Gcaud3633.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_120_length_47600_cov_4.363763 2378..2380 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3633.t1.CDS1	Gcaud3633.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_120_length_47600_cov_4.363763 2378..3046 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3633.t1.exon1	Gcaud3633.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_120_length_47600_cov_4.363763 2378..3046 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3633.t1.stop1	Gcaud3633.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_120_length_47600_cov_4.363763 3044..3046 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3633.t1	Gcaud3633.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_120_length_47600_cov_4.363763 2378..3046 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_120_length_47600_cov_4.363763:2378..3046+
coding sequence from alignment at NODE_120_length_47600_cov_4.363763:2378..3046+

mRNA sequence

>Gcaud3633.t1 ID=Gcaud3633.t1|Name=Gcaud3633.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=223bp
MKSFIVLFVAATLAYQAAAQCTGSAMYRVVFSNFLTPENFSFIPTFPATG
VSFSPLAGVAHSNRISFLTVRGFASPQVEQIAETGMNGRFLKAAEHLVGK
GVLTVAGGMGAPAGTNQSIVLTVDCENPFITALSMVAPSPDWIVQINNED
TVAEDGSFIPRIAGSLIAYDAGTDDGDMFTAPPDASLDLPTEPPKNIAPL
VEDPTDPFGGAIIGFYVVERID*

spliced messenger RNA

>Gcaud3633.t1 ID=Gcaud3633.t1|Name=Gcaud3633.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=669bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:2378..3046+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTCATTCATTGTCCTTTTCGTTGCCGCTACGCTTGCCTATCAGGC
AGCGGCCCAGTGCACAGGATCGGCTATGTACAGAGTCGTGTTCTCCAACT
TCTTGACGCCAGAGAACTTTTCATTCATTCCCACCTTCCCTGCAACCGGA
GTTAGCTTCTCGCCACTTGCCGGAGTGGCCCACTCCAACCGTATATCGTT
CCTGACTGTCCGAGGATTTGCTTCACCTCAAGTTGAGCAGATCGCCGAAA
CGGGCATGAACGGACGCTTCCTCAAGGCAGCTGAGCATCTGGTCGGGAAA
GGTGTCCTAACGGTTGCCGGCGGAATGGGTGCTCCAGCTGGAACTAACCA
GTCTATTGTCCTGACGGTCGACTGTGAGAATCCGTTCATCACCGCTCTCT
CCATGGTTGCCCCGTCCCCAGACTGGATTGTGCAGATTAACAATGAGGAT
ACAGTGGCCGAAGACGGAAGTTTCATCCCGCGTATTGCTGGGAGTTTGAT
TGCATACGATGCGGGAACGGATGACGGAGACATGTTCACTGCTCCACCCG
ACGCAAGCTTGGACCTGCCGACTGAGCCGCCAAAGAACATTGCCCCTCTG
GTCGAGGACCCCACAGATCCGTTCGGGGGCGCAATCATTGGGTTCTATGT
AGTTGAACGAATTGATTAA

protein sequence of Gcaud3633.t1

>Gcaud3633.t1 ID=Gcaud3633.t1|Name=Gcaud3633.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=223bp
MKSFIVLFVAATLAYQAAAQCTGSAMYRVVFSNFLTPENFSFIPTFPATG
VSFSPLAGVAHSNRISFLTVRGFASPQVEQIAETGMNGRFLKAAEHLVGK
GVLTVAGGMGAPAGTNQSIVLTVDCENPFITALSMVAPSPDWIVQINNED
TVAEDGSFIPRIAGSLIAYDAGTDDGDMFTAPPDASLDLPTEPPKNIAPL
VEDPTDPFGGAIIGFYVVERID*

mRNA from alignment at NODE_120_length_47600_cov_4.363763:2378..3046+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3633.t1 ID=Gcaud3633.t1|Name=Gcaud3633.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=669bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:2378..3046+ (Gracilaria caudata M_176_S67 male)
ATGAAGTCATTCATTGTCCTTTTCGTTGCCGCTACGCTTGCCTATCAGGC
AGCGGCCCAGTGCACAGGATCGGCTATGTACAGAGTCGTGTTCTCCAACT
TCTTGACGCCAGAGAACTTTTCATTCATTCCCACCTTCCCTGCAACCGGA
GTTAGCTTCTCGCCACTTGCCGGAGTGGCCCACTCCAACCGTATATCGTT
CCTGACTGTCCGAGGATTTGCTTCACCTCAAGTTGAGCAGATCGCCGAAA
CGGGCATGAACGGACGCTTCCTCAAGGCAGCTGAGCATCTGGTCGGGAAA
GGTGTCCTAACGGTTGCCGGCGGAATGGGTGCTCCAGCTGGAACTAACCA
GTCTATTGTCCTGACGGTCGACTGTGAGAATCCGTTCATCACCGCTCTCT
CCATGGTTGCCCCGTCCCCAGACTGGATTGTGCAGATTAACAATGAGGAT
ACAGTGGCCGAAGACGGAAGTTTCATCCCGCGTATTGCTGGGAGTTTGAT
TGCATACGATGCGGGAACGGATGACGGAGACATGTTCACTGCTCCACCCG
ACGCAAGCTTGGACCTGCCGACTGAGCCGCCAAAGAACATTGCCCCTCTG
GTCGAGGACCCCACAGATCCGTTCGGGGGCGCAATCATTGGGTTCTATGT
AGTTGAACGAATTGATTAA

Coding sequence (CDS) from alignment at NODE_120_length_47600_cov_4.363763:2378..3046+

>Gcaud3633.t1 ID=Gcaud3633.t1|Name=Gcaud3633.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=669bp|location=Sequence derived from alignment at NODE_120_length_47600_cov_4.363763:2378..3046+ (Gracilaria caudata M_176_S67 male)
ATGAAGTCATTCATTGTCCTTTTCGTTGCCGCTACGCTTGCCTATCAGGC
AGCGGCCCAGTGCACAGGATCGGCTATGTACAGAGTCGTGTTCTCCAACT
TCTTGACGCCAGAGAACTTTTCATTCATTCCCACCTTCCCTGCAACCGGA
GTTAGCTTCTCGCCACTTGCCGGAGTGGCCCACTCCAACCGTATATCGTT
CCTGACTGTCCGAGGATTTGCTTCACCTCAAGTTGAGCAGATCGCCGAAA
CGGGCATGAACGGACGCTTCCTCAAGGCAGCTGAGCATCTGGTCGGGAAA
GGTGTCCTAACGGTTGCCGGCGGAATGGGTGCTCCAGCTGGAACTAACCA
GTCTATTGTCCTGACGGTCGACTGTGAGAATCCGTTCATCACCGCTCTCT
CCATGGTTGCCCCGTCCCCAGACTGGATTGTGCAGATTAACAATGAGGAT
ACAGTGGCCGAAGACGGAAGTTTCATCCCGCGTATTGCTGGGAGTTTGAT
TGCATACGATGCGGGAACGGATGACGGAGACATGTTCACTGCTCCACCCG
ACGCAAGCTTGGACCTGCCGACTGAGCCGCCAAAGAACATTGCCCCTCTG
GTCGAGGACCCCACAGATCCGTTCGGGGGCGCAATCATTGGGTTCTATGT
AGTTGAACGAATTGATTAA