Gcaud3628.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3628.t1
Unique Name	Gcaud3628.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	249

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_938_length_15940_cov_4.442425	contig	NODE_938_length_15940_cov_4.442425:3451..4279 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3628	Gcaud3628	Gracilaria caudata M_176_S67 male	gene	NODE_938_length_15940_cov_4.442425 3451..5964 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3628.t1	Gcaud3628.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_938_length_15940_cov_4.442425 3451..4279 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3628.t1.start1	Gcaud3628.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_938_length_15940_cov_4.442425 3451..3453 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3628.t1.CDS1	Gcaud3628.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_938_length_15940_cov_4.442425 3451..4194 +
Gcaud3628.t1.CDS2	Gcaud3628.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_938_length_15940_cov_4.442425 4277..4279 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3628.t1.exon1	Gcaud3628.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_938_length_15940_cov_4.442425 3451..4194 +
Gcaud3628.t1.exon2	Gcaud3628.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_938_length_15940_cov_4.442425 4277..4279 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3628.t1.intron1	Gcaud3628.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_938_length_15940_cov_4.442425 4195..4276 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3628.t1.stop1	Gcaud3628.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_938_length_15940_cov_4.442425 4277..4279 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_938_length_15940_cov_4.442425:3451..4279+
coding sequence from alignment at NODE_938_length_15940_cov_4.442425:3451..4279+

mRNA sequence

>Gcaud3628.t1 ID=Gcaud3628.t1|Name=Gcaud3628.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=249bp
MAPPQAFVAPLILGNVSHRQPHRLSKRVVRAPTVSSRALCMTAAPGPNPE
QKQQPAIVDASDFNDAPPKSQAGPIANAETEAVDLLVEQTSPPTSLPPPE
ESKLETPTHSESLKTGEGSQQQPATKESRVAEIPGTGTTVKLSPEDIETA
RKAREAAQKAAEAKEETQQEQQKRILARAQQICTAIGTRTKAFELGQRAR
GALGTALQNAQTEAEKEDVDTQTKLRASASKAAEALGKAAENGWNTTA*

spliced messenger RNA

>Gcaud3628.t1 ID=Gcaud3628.t1|Name=Gcaud3628.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=747bp|location=Sequence derived from alignment at NODE_938_length_15940_cov_4.442425:3451..4279+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCTCCACAAGCCTTTGTCGCGCCATTAATTCTTGGAAATGTGTC
TCATCGTCAACCACATCGTCTTTCTAAGCGTGTCGTCCGCGCTCCTACTG
TTTCGTCTCGTGCCTTGTGCATGACTGCAGCCCCCGGTCCTAATCCGGAG
CAGAAACAGCAACCTGCAATCGTTGATGCATCGGACTTCAATGACGCACC
GCCCAAGAGTCAGGCTGGTCCCATTGCAAACGCTGAAACAGAGGCTGTAG
ACCTCCTTGTCGAGCAAACGTCTCCTCCTACTTCACTGCCGCCGCCGGAA
GAGTCCAAGCTTGAAACCCCAACGCATTCGGAATCTTTGAAGACAGGTGA
AGGATCACAGCAACAACCAGCTACGAAAGAATCTCGGGTCGCTGAAATCC
CAGGTACAGGCACAACAGTTAAACTCTCCCCCGAAGATATTGAAACGGCG
CGCAAAGCTCGCGAAGCGGCTCAGAAAGCGGCAGAAGCGAAGGAAGAAAC
CCAACAAGAGCAGCAGAAGCGAATTTTGGCCCGTGCTCAGCAGATATGTA
CGGCTATTGGCACTCGAACCAAGGCATTTGAACTCGGTCAACGTGCACGA
GGTGCGCTTGGAACGGCTTTGCAGAATGCACAAACTGAAGCGGAGAAGGA
AGACGTCGATACCCAAACCAAACTGCGTGCCTCAGCTTCAAAAGCTGCTG
AAGCCCTGGGAAAGGCGGCCGAAAACGGGTGGAACACCACTGCTTGA

protein sequence of Gcaud3628.t1

>Gcaud3628.t1 ID=Gcaud3628.t1|Name=Gcaud3628.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=249bp
MAPPQAFVAPLILGNVSHRQPHRLSKRVVRAPTVSSRALCMTAAPGPNPE
QKQQPAIVDASDFNDAPPKSQAGPIANAETEAVDLLVEQTSPPTSLPPPE
ESKLETPTHSESLKTGEGSQQQPATKESRVAEIPGTGTTVKLSPEDIETA
RKAREAAQKAAEAKEETQQEQQKRILARAQQICTAIGTRTKAFELGQRAR
GALGTALQNAQTEAEKEDVDTQTKLRASASKAAEALGKAAENGWNTTA*

mRNA from alignment at NODE_938_length_15940_cov_4.442425:3451..4279+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3628.t1 ID=Gcaud3628.t1|Name=Gcaud3628.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=829bp|location=Sequence derived from alignment at NODE_938_length_15940_cov_4.442425:3451..4279+ (Gracilaria caudata M_176_S67 male)
ATGGCTCCTCCACAAGCCTTTGTCGCGCCATTAATTCTTGGAAATGTGTC
TCATCGTCAACCACATCGTCTTTCTAAGCGTGTCGTCCGCGCTCCTACTG
TTTCGTCTCGTGCCTTGTGCATGACTGCAGCCCCCGGTCCTAATCCGGAG
CAGAAACAGCAACCTGCAATCGTTGATGCATCGGACTTCAATGACGCACC
GCCCAAGAGTCAGGCTGGTCCCATTGCAAACGCTGAAACAGAGGCTGTAG
ACCTCCTTGTCGAGCAAACGTCTCCTCCTACTTCACTGCCGCCGCCGGAA
GAGTCCAAGCTTGAAACCCCAACGCATTCGGAATCTTTGAAGACAGGTGA
AGGATCACAGCAACAACCAGCTACGAAAGAATCTCGGGTCGCTGAAATCC
CAGGTACAGGCACAACAGTTAAACTCTCCCCCGAAGATATTGAAACGGCG
CGCAAAGCTCGCGAAGCGGCTCAGAAAGCGGCAGAAGCGAAGGAAGAAAC
CCAACAAGAGCAGCAGAAGCGAATTTTGGCCCGTGCTCAGCAGATATGTA
CGGCTATTGGCACTCGAACCAAGGCATTTGAACTCGGTCAACGTGCACGA
GGTGCGCTTGGAACGGCTTTGCAGAATGCACAAACTGAAGCGGAGAAGGA
AGACGTCGATACCCAAACCAAACTGCGTGCCTCAGCTTCAAAAGCTGCTG
AAGCCCTGGGAAAGGCGGCCGAAAACGGGTGGAACACCACTGCTGTACCT
TGGCTCAAAAAGAAGGTATTACCACAGGTGTTCGATGAAGTCGCCCCCGC
AACTGTTGCTGCCTCTACCCTCGCAGTGA

Coding sequence (CDS) from alignment at NODE_938_length_15940_cov_4.442425:3451..4279+

>Gcaud3628.t1 ID=Gcaud3628.t1|Name=Gcaud3628.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=747bp|location=Sequence derived from alignment at NODE_938_length_15940_cov_4.442425:3451..4279+ (Gracilaria caudata M_176_S67 male)
ATGGCTCCTCCACAAGCCTTTGTCGCGCCATTAATTCTTGGAAATGTGTC
TCATCGTCAACCACATCGTCTTTCTAAGCGTGTCGTCCGCGCTCCTACTG
TTTCGTCTCGTGCCTTGTGCATGACTGCAGCCCCCGGTCCTAATCCGGAG
CAGAAACAGCAACCTGCAATCGTTGATGCATCGGACTTCAATGACGCACC
GCCCAAGAGTCAGGCTGGTCCCATTGCAAACGCTGAAACAGAGGCTGTAG
ACCTCCTTGTCGAGCAAACGTCTCCTCCTACTTCACTGCCGCCGCCGGAA
GAGTCCAAGCTTGAAACCCCAACGCATTCGGAATCTTTGAAGACAGGTGA
AGGATCACAGCAACAACCAGCTACGAAAGAATCTCGGGTCGCTGAAATCC
CAGGTACAGGCACAACAGTTAAACTCTCCCCCGAAGATATTGAAACGGCG
CGCAAAGCTCGCGAAGCGGCTCAGAAAGCGGCAGAAGCGAAGGAAGAAAC
CCAACAAGAGCAGCAGAAGCGAATTTTGGCCCGTGCTCAGCAGATATGTA
CGGCTATTGGCACTCGAACCAAGGCATTTGAACTCGGTCAACGTGCACGA
GGTGCGCTTGGAACGGCTTTGCAGAATGCACAAACTGAAGCGGAGAAGGA
AGACGTCGATACCCAAACCAAACTGCGTGCCTCAGCTTCAAAAGCTGCTG
AAGCCCTGGGAAAGGCGGCCGAAAACGGGTGGAACACCACTGCTTGA