Gcaud3623.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3623.t1
Unique Name	Gcaud3623.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	317

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_173_length_41010_cov_4.294826	contig	NODE_173_length_41010_cov_4.294826:19050..20071 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3055.EDP01256
PFAMs	TMEM189_B_dmain
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K20417
Evalue	1.38e-51
EggNOG OGs	KOG3011@1\|root,KOG3011@2759\|Eukaryota,37QIC@33090\|Viridiplantae,34JKZ@3041\|Chlorophyta
EC	1.14.19.43
Description	B domain of TMEM189, localisation domain
COG category	O
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3623	Gcaud3623	Gracilaria caudata M_176_S67 male	gene	NODE_173_length_41010_cov_4.294826 19050..20071 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3623.t1	Gcaud3623.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_173_length_41010_cov_4.294826 19050..20071 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3623.t1.stop1	Gcaud3623.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_173_length_41010_cov_4.294826 19050..19052 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3623.t1.CDS1	Gcaud3623.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_173_length_41010_cov_4.294826 19050..19534 -
Gcaud3623.t1.CDS2	Gcaud3623.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_173_length_41010_cov_4.294826 19606..20071 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3623.t1.exon1	Gcaud3623.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_173_length_41010_cov_4.294826 19050..19534 -
Gcaud3623.t1.exon2	Gcaud3623.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_173_length_41010_cov_4.294826 19606..20071 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3623.t1.intron1	Gcaud3623.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_173_length_41010_cov_4.294826 19535..19605 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3623.t1.start1	Gcaud3623.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_173_length_41010_cov_4.294826 20069..20071 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_173_length_41010_cov_4.294826:19050..20071-
coding sequence from alignment at NODE_173_length_41010_cov_4.294826:19050..20071-

mRNA sequence

>Gcaud3623.t1 ID=Gcaud3623.t1|Name=Gcaud3623.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=317bp
MAFAFATPTPFLNPSATFVSTFKTSVTLNKASRSTQGAHNRVLPRCAQSI
RPSSLPSPSSFSRQKPGYVKPTAAPHLTAEGDSLQSTPQQRLLLLTFAAA
SLAAFAQVCSHVHGGVDAAVDVLLVFASYVFTDFAIGVYHHAVDNYGSKH
TPLVGYQIEAFQGHHEYPWTIASRDMANNLYRLTIVTIPQLLLLLSAPLP
DYFKAFYSAFLFFIVMSQETHRQAHMTRAAPWVRALQNIGLIVSQKAHAA
HHRKSGAYEGNYCILSGWWNPFLDQSGFFRLHEAMIYKLTGNEPICWRLD
GSLKADALRRLPEAWR*

spliced messenger RNA

>Gcaud3623.t1 ID=Gcaud3623.t1|Name=Gcaud3623.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=951bp|location=Sequence derived from alignment at NODE_173_length_41010_cov_4.294826:19050..20071- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCGCGTTTGCTACACCTACCCCATTTCTAAACCCGTCCGCAAC
ATTCGTATCCACTTTCAAAACGTCCGTCACGCTTAACAAGGCTTCGCGCT
CCACACAGGGCGCACACAACCGCGTTCTGCCTAGATGCGCGCAATCGATC
CGCCCGTCCAGTTTGCCATCTCCATCCTCGTTCTCTCGACAAAAGCCAGG
CTACGTCAAGCCCACAGCAGCACCTCACCTCACAGCCGAAGGAGATAGCT
TGCAGAGCACGCCACAACAGCGACTTCTCCTTCTTACTTTCGCCGCCGCT
TCACTGGCCGCATTTGCGCAGGTCTGTTCGCACGTGCACGGAGGAGTCGA
TGCCGCTGTTGACGTCTTGCTTGTGTTTGCATCGTACGTGTTCACGGACT
TCGCAATAGGCGTTTACCACCATGCCGTAGACAATTATGGCTCAAAGCAC
ACCCCACTTGTAGGCTATCAAATTGAAGCGTTTCAGGGTCATCACGAGTA
CCCCTGGACCATCGCATCTCGTGACATGGCTAACAACTTGTACAGACTTA
CCATCGTCACCATTCCACAACTGTTGTTATTACTCTCAGCCCCACTTCCC
GATTACTTCAAAGCCTTTTACTCGGCGTTCTTATTCTTCATCGTTATGTC
TCAAGAGACACACAGACAAGCGCACATGACTCGGGCAGCCCCATGGGTGC
GCGCCCTACAGAATATTGGACTCATTGTATCACAAAAAGCGCACGCAGCC
CACCACAGAAAAAGCGGCGCTTACGAGGGAAACTACTGTATCCTTTCTGG
TTGGTGGAACCCCTTTCTGGATCAGTCTGGGTTCTTTAGGTTACATGAAG
CAATGATCTATAAATTGACTGGAAATGAGCCCATTTGTTGGCGTCTGGAT
GGTTCTCTAAAAGCTGATGCCCTTCGAAGGCTCCCTGAGGCTTGGCGGTA
G

protein sequence of Gcaud3623.t1

>Gcaud3623.t1 ID=Gcaud3623.t1|Name=Gcaud3623.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=317bp
MAFAFATPTPFLNPSATFVSTFKTSVTLNKASRSTQGAHNRVLPRCAQSI
RPSSLPSPSSFSRQKPGYVKPTAAPHLTAEGDSLQSTPQQRLLLLTFAAA
SLAAFAQVCSHVHGGVDAAVDVLLVFASYVFTDFAIGVYHHAVDNYGSKH
TPLVGYQIEAFQGHHEYPWTIASRDMANNLYRLTIVTIPQLLLLLSAPLP
DYFKAFYSAFLFFIVMSQETHRQAHMTRAAPWVRALQNIGLIVSQKAHAA
HHRKSGAYEGNYCILSGWWNPFLDQSGFFRLHEAMIYKLTGNEPICWRLD
GSLKADALRRLPEAWR*

mRNA from alignment at NODE_173_length_41010_cov_4.294826:19050..20071-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3623.t1 ID=Gcaud3623.t1|Name=Gcaud3623.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1022bp|location=Sequence derived from alignment at NODE_173_length_41010_cov_4.294826:19050..20071- (Gracilaria caudata M_176_S67 male)
ATGGCCTTCGCGTTTGCTACACCTACCCCATTTCTAAACCCGTCCGCAAC
ATTCGTATCCACTTTCAAAACGTCCGTCACGCTTAACAAGGCTTCGCGCT
CCACACAGGGCGCACACAACCGCGTTCTGCCTAGATGCGCGCAATCGATC
CGCCCGTCCAGTTTGCCATCTCCATCCTCGTTCTCTCGACAAAAGCCAGG
CTACGTCAAGCCCACAGCAGCACCTCACCTCACAGCCGAAGGAGATAGCT
TGCAGAGCACGCCACAACAGCGACTTCTCCTTCTTACTTTCGCCGCCGCT
TCACTGGCCGCATTTGCGCAGGTCTGTTCGCACGTGCACGGAGGAGTCGA
TGCCGCTGTTGACGTCTTGCTTGTGTTTGCATCGTACGTGTTCACGGACT
TCGCAATAGGCGTTTACCACCATGCCGTAGACAATTATGGCTCAAAGCAC
ACCCCACTTGTAGGCTGTACGTATCTGTTAACTATGTCGCGTAGTAGCAG
AATCCGTTTTGCCGTACTGACTTTTTCCTTTCTCTAGATCAAATTGAAGC
GTTTCAGGGTCATCACGAGTACCCCTGGACCATCGCATCTCGTGACATGG
CTAACAACTTGTACAGACTTACCATCGTCACCATTCCACAACTGTTGTTA
TTACTCTCAGCCCCACTTCCCGATTACTTCAAAGCCTTTTACTCGGCGTT
CTTATTCTTCATCGTTATGTCTCAAGAGACACACAGACAAGCGCACATGA
CTCGGGCAGCCCCATGGGTGCGCGCCCTACAGAATATTGGACTCATTGTA
TCACAAAAAGCGCACGCAGCCCACCACAGAAAAAGCGGCGCTTACGAGGG
AAACTACTGTATCCTTTCTGGTTGGTGGAACCCCTTTCTGGATCAGTCTG
GGTTCTTTAGGTTACATGAAGCAATGATCTATAAATTGACTGGAAATGAG
CCCATTTGTTGGCGTCTGGATGGTTCTCTAAAAGCTGATGCCCTTCGAAG
GCTCCCTGAGGCTTGGCGGTAG

Coding sequence (CDS) from alignment at NODE_173_length_41010_cov_4.294826:19050..20071-

>Gcaud3623.t1 ID=Gcaud3623.t1|Name=Gcaud3623.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=951bp|location=Sequence derived from alignment at NODE_173_length_41010_cov_4.294826:19050..20071- (Gracilaria caudata M_176_S67 male)
ATGGCCTTCGCGTTTGCTACACCTACCCCATTTCTAAACCCGTCCGCAAC
ATTCGTATCCACTTTCAAAACGTCCGTCACGCTTAACAAGGCTTCGCGCT
CCACACAGGGCGCACACAACCGCGTTCTGCCTAGATGCGCGCAATCGATC
CGCCCGTCCAGTTTGCCATCTCCATCCTCGTTCTCTCGACAAAAGCCAGG
CTACGTCAAGCCCACAGCAGCACCTCACCTCACAGCCGAAGGAGATAGCT
TGCAGAGCACGCCACAACAGCGACTTCTCCTTCTTACTTTCGCCGCCGCT
TCACTGGCCGCATTTGCGCAGGTCTGTTCGCACGTGCACGGAGGAGTCGA
TGCCGCTGTTGACGTCTTGCTTGTGTTTGCATCGTACGTGTTCACGGACT
TCGCAATAGGCGTTTACCACCATGCCGTAGACAATTATGGCTCAAAGCAC
ACCCCACTTGTAGGCTATCAAATTGAAGCGTTTCAGGGTCATCACGAGTA
CCCCTGGACCATCGCATCTCGTGACATGGCTAACAACTTGTACAGACTTA
CCATCGTCACCATTCCACAACTGTTGTTATTACTCTCAGCCCCACTTCCC
GATTACTTCAAAGCCTTTTACTCGGCGTTCTTATTCTTCATCGTTATGTC
TCAAGAGACACACAGACAAGCGCACATGACTCGGGCAGCCCCATGGGTGC
GCGCCCTACAGAATATTGGACTCATTGTATCACAAAAAGCGCACGCAGCC
CACCACAGAAAAAGCGGCGCTTACGAGGGAAACTACTGTATCCTTTCTGG
TTGGTGGAACCCCTTTCTGGATCAGTCTGGGTTCTTTAGGTTACATGAAG
CAATGATCTATAAATTGACTGGAAATGAGCCCATTTGTTGGCGTCTGGAT
GGTTCTCTAAAAGCTGATGCCCTTCGAAGGCTCCCTGAGGCTTGGCGGTA
G