Gcaud3613.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3613.t1
Unique Name	Gcaud3613.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	423

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_721_length_19109_cov_4.832422	contig	NODE_721_length_19109_cov_4.832422:15473..16792 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	70448.A0A096PA36
PFAMs	THUMP
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K06963
Evalue	6.46e-26
EggNOG OGs	COG1818@1\|root,KOG3943@2759\|Eukaryota,37PFC@33090\|Viridiplantae,34N5G@3041\|Chlorophyta
Description	THUMP
COG category	S
BRITE	ko00000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3613	Gcaud3613	Gracilaria caudata M_176_S67 male	gene	NODE_721_length_19109_cov_4.832422 15473..16792 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3613.t1	Gcaud3613.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_721_length_19109_cov_4.832422 15473..16792 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3613.t1.stop1	Gcaud3613.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_721_length_19109_cov_4.832422 15473..15475 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3613.t1.CDS1	Gcaud3613.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_721_length_19109_cov_4.832422 15473..15643 -
Gcaud3613.t1.CDS2	Gcaud3613.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_721_length_19109_cov_4.832422 15695..16792 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3613.t1.exon1	Gcaud3613.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_721_length_19109_cov_4.832422 15473..15643 -
Gcaud3613.t1.exon2	Gcaud3613.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_721_length_19109_cov_4.832422 15695..16792 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3613.t1.intron1	Gcaud3613.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_721_length_19109_cov_4.832422 15644..15694 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3613.t1.start1	Gcaud3613.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_721_length_19109_cov_4.832422 16790..16792 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_721_length_19109_cov_4.832422:15473..16792-
coding sequence from alignment at NODE_721_length_19109_cov_4.832422:15473..16792-

mRNA sequence

>Gcaud3613.t1 ID=Gcaud3613.t1|Name=Gcaud3613.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=423bp
MGSTLPQKRVAPKNAALSSRARRRKFRAVGVETVRRADLSQAQRGVLVSC
TPGHEHHAFRDAVVLLSKFVRAEKQPSSAAPTKRDHEIDAKATDKNALES
ELAQLRKGNDGVFTRVVADVKGAVFLRVQDQSADVEHVVEQALLEARESG
NAGSRHCIRVIPVHGTCYAKADLAANVALTVVKEHFPSVEREGGVSFAIV
FRARLNNSAKRDHFIEAIAKAIHDYEPRYKVDLTKPDVVLIVEVLKTSCC
IGTFRKFYQLAKLNLREAACPSKEKEKENKMDGGDDKKEANEKAADGCDE
RDVKENADRDRHDARAEANEKAADGVDQRDVDEKADKDRHDVQTEADEKV
ADVGDERDVKKNANEKVADSGGERDVKENADRDRHEMRTEADDKLADGCE
ERDVKENEHKDAAGEGQTKAEE*

spliced messenger RNA

>Gcaud3613.t1 ID=Gcaud3613.t1|Name=Gcaud3613.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at NODE_721_length_19109_cov_4.832422:15473..16792- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTCCACGTTGCCGCAAAAGAGGGTTGCGCCCAAGAATGCCGCCCT
GTCCTCGCGTGCGCGCCGTAGAAAATTTCGCGCAGTTGGCGTGGAGACTG
TGCGTCGCGCCGATTTGAGTCAGGCGCAGCGCGGCGTACTCGTTAGTTGC
ACGCCGGGCCACGAGCACCACGCGTTCCGCGACGCTGTGGTGCTCCTGTC
AAAATTCGTACGCGCCGAGAAACAACCATCCTCCGCAGCGCCGACGAAGC
GTGACCACGAAATCGATGCGAAGGCGACGGACAAGAATGCGCTGGAGAGC
GAGTTGGCACAGCTGCGAAAGGGTAACGATGGAGTGTTTACTCGCGTCGT
GGCCGACGTGAAAGGTGCCGTGTTTCTGCGCGTGCAAGACCAGAGTGCAG
ATGTCGAACATGTGGTGGAACAGGCGCTGTTAGAAGCGCGCGAGAGCGGT
AATGCCGGCTCGCGACATTGCATCCGAGTGATCCCTGTGCACGGAACGTG
CTACGCCAAAGCGGACCTGGCCGCCAACGTGGCGTTAACGGTTGTGAAGG
AGCACTTTCCGAGTGTGGAGCGGGAGGGAGGCGTTTCGTTTGCGATCGTG
TTTCGCGCGCGATTGAACAATTCTGCAAAGAGAGATCACTTTATCGAGGC
GATCGCAAAGGCGATTCATGATTATGAACCTCGATACAAGGTGGATTTGA
CCAAACCGGATGTGGTGCTCATTGTGGAGGTTTTGAAGACTAGCTGTTGC
ATTGGAACGTTCCGAAAGTTTTATCAGCTGGCAAAGCTCAACCTGAGGGA
GGCTGCATGTCCTTCGAAGGAAAAAGAAAAGGAAAACAAAATGGATGGGG
GTGACGATAAAAAAGAAGCAAATGAGAAGGCGGCAGACGGTTGTGACGAG
CGTGATGTGAAAGAGAATGCGGACAGAGACAGACACGATGCACGGGCGGA
GGCGAATGAGAAGGCGGCAGACGGTGTTGACCAGCGTGATGTCGACGAGA
AGGCAGACAAAGACAGACACGATGTACAGACTGAGGCGGATGAGAAGGTG
GCAGATGTCGGCGACGAGCGTGATGTGAAGAAGAACGCGAATGAGAAGGT
GGCAGATAGTGGCGGCGAGCGTGATGTGAAGGAGAATGCAGATAGAGACA
GACACGAAATGCGGACGGAGGCGGATGACAAGTTGGCTGATGGTTGTGAA
GAGCGTGATGTGAAGGAGAACGAGCACAAAGATGCTGCAGGCGAAGGACA
GACGAAAGCGGAAGAATGA

protein sequence of Gcaud3613.t1

>Gcaud3613.t1 ID=Gcaud3613.t1|Name=Gcaud3613.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=423bp
MGSTLPQKRVAPKNAALSSRARRRKFRAVGVETVRRADLSQAQRGVLVSC
TPGHEHHAFRDAVVLLSKFVRAEKQPSSAAPTKRDHEIDAKATDKNALES
ELAQLRKGNDGVFTRVVADVKGAVFLRVQDQSADVEHVVEQALLEARESG
NAGSRHCIRVIPVHGTCYAKADLAANVALTVVKEHFPSVEREGGVSFAIV
FRARLNNSAKRDHFIEAIAKAIHDYEPRYKVDLTKPDVVLIVEVLKTSCC
IGTFRKFYQLAKLNLREAACPSKEKEKENKMDGGDDKKEANEKAADGCDE
RDVKENADRDRHDARAEANEKAADGVDQRDVDEKADKDRHDVQTEADEKV
ADVGDERDVKKNANEKVADSGGERDVKENADRDRHEMRTEADDKLADGCE
ERDVKENEHKDAAGEGQTKAEE*

mRNA from alignment at NODE_721_length_19109_cov_4.832422:15473..16792-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3613.t1 ID=Gcaud3613.t1|Name=Gcaud3613.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1320bp|location=Sequence derived from alignment at NODE_721_length_19109_cov_4.832422:15473..16792- (Gracilaria caudata M_176_S67 male)
ATGGGCTCCACGTTGCCGCAAAAGAGGGTTGCGCCCAAGAATGCCGCCCT
GTCCTCGCGTGCGCGCCGTAGAAAATTTCGCGCAGTTGGCGTGGAGACTG
TGCGTCGCGCCGATTTGAGTCAGGCGCAGCGCGGCGTACTCGTTAGTTGC
ACGCCGGGCCACGAGCACCACGCGTTCCGCGACGCTGTGGTGCTCCTGTC
AAAATTCGTACGCGCCGAGAAACAACCATCCTCCGCAGCGCCGACGAAGC
GTGACCACGAAATCGATGCGAAGGCGACGGACAAGAATGCGCTGGAGAGC
GAGTTGGCACAGCTGCGAAAGGGTAACGATGGAGTGTTTACTCGCGTCGT
GGCCGACGTGAAAGGTGCCGTGTTTCTGCGCGTGCAAGACCAGAGTGCAG
ATGTCGAACATGTGGTGGAACAGGCGCTGTTAGAAGCGCGCGAGAGCGGT
AATGCCGGCTCGCGACATTGCATCCGAGTGATCCCTGTGCACGGAACGTG
CTACGCCAAAGCGGACCTGGCCGCCAACGTGGCGTTAACGGTTGTGAAGG
AGCACTTTCCGAGTGTGGAGCGGGAGGGAGGCGTTTCGTTTGCGATCGTG
TTTCGCGCGCGATTGAACAATTCTGCAAAGAGAGATCACTTTATCGAGGC
GATCGCAAAGGCGATTCATGATTATGAACCTCGATACAAGGTGGATTTGA
CCAAACCGGATGTGGTGCTCATTGTGGAGGTTTTGAAGACTAGCTGTTGC
ATTGGAACGTTCCGAAAGTTTTATCAGCTGGCAAAGCTCAACCTGAGGGA
GGCTGCATGTCCTTCGAAGGAAAAAGAAAAGGAAAACAAAATGGATGGGG
GTGACGATAAAAAAGAAGCAAATGAGAAGGCGGCAGACGGTTGTGACGAG
CGTGATGTGAAAGAGAATGCGGACAGAGACAGACACGATGCACGGGCGGA
GGCGAATGAGAAGGCGGCAGACGGTGTTGACCAGCGTGATGTCGACGAGA
AGGCAGACAAAGACAGACACGATGTACAGACTGAGGCGGATGAGAAGGTG
GCAGATGTCGGCGACGAGCGTGATGTGAAGAAGAACGCGAATGAGAAGGT
GGCAGATGGTGGCGGCGAGCGTGATGTGAAGGAGAACACGAATGAGAAGG
TGGCAGATAGTGGCGGCGAGCGTGATGTGAAGGAGAATGCAGATAGAGAC
AGACACGAAATGCGGACGGAGGCGGATGACAAGTTGGCTGATGGTTGTGA
AGAGCGTGATGTGAAGGAGAACGAGCACAAAGATGCTGCAGGCGAAGGAC
AGACGAAAGCGGAAGAATGA

Coding sequence (CDS) from alignment at NODE_721_length_19109_cov_4.832422:15473..16792-

>Gcaud3613.t1 ID=Gcaud3613.t1|Name=Gcaud3613.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1269bp|location=Sequence derived from alignment at NODE_721_length_19109_cov_4.832422:15473..16792- (Gracilaria caudata M_176_S67 male)
ATGGGCTCCACGTTGCCGCAAAAGAGGGTTGCGCCCAAGAATGCCGCCCT
GTCCTCGCGTGCGCGCCGTAGAAAATTTCGCGCAGTTGGCGTGGAGACTG
TGCGTCGCGCCGATTTGAGTCAGGCGCAGCGCGGCGTACTCGTTAGTTGC
ACGCCGGGCCACGAGCACCACGCGTTCCGCGACGCTGTGGTGCTCCTGTC
AAAATTCGTACGCGCCGAGAAACAACCATCCTCCGCAGCGCCGACGAAGC
GTGACCACGAAATCGATGCGAAGGCGACGGACAAGAATGCGCTGGAGAGC
GAGTTGGCACAGCTGCGAAAGGGTAACGATGGAGTGTTTACTCGCGTCGT
GGCCGACGTGAAAGGTGCCGTGTTTCTGCGCGTGCAAGACCAGAGTGCAG
ATGTCGAACATGTGGTGGAACAGGCGCTGTTAGAAGCGCGCGAGAGCGGT
AATGCCGGCTCGCGACATTGCATCCGAGTGATCCCTGTGCACGGAACGTG
CTACGCCAAAGCGGACCTGGCCGCCAACGTGGCGTTAACGGTTGTGAAGG
AGCACTTTCCGAGTGTGGAGCGGGAGGGAGGCGTTTCGTTTGCGATCGTG
TTTCGCGCGCGATTGAACAATTCTGCAAAGAGAGATCACTTTATCGAGGC
GATCGCAAAGGCGATTCATGATTATGAACCTCGATACAAGGTGGATTTGA
CCAAACCGGATGTGGTGCTCATTGTGGAGGTTTTGAAGACTAGCTGTTGC
ATTGGAACGTTCCGAAAGTTTTATCAGCTGGCAAAGCTCAACCTGAGGGA
GGCTGCATGTCCTTCGAAGGAAAAAGAAAAGGAAAACAAAATGGATGGGG
GTGACGATAAAAAAGAAGCAAATGAGAAGGCGGCAGACGGTTGTGACGAG
CGTGATGTGAAAGAGAATGCGGACAGAGACAGACACGATGCACGGGCGGA
GGCGAATGAGAAGGCGGCAGACGGTGTTGACCAGCGTGATGTCGACGAGA
AGGCAGACAAAGACAGACACGATGTACAGACTGAGGCGGATGAGAAGGTG
GCAGATGTCGGCGACGAGCGTGATGTGAAGAAGAACGCGAATGAGAAGGT
GGCAGATAGTGGCGGCGAGCGTGATGTGAAGGAGAATGCAGATAGAGACA
GACACGAAATGCGGACGGAGGCGGATGACAAGTTGGCTGATGGTTGTGAA
GAGCGTGATGTGAAGGAGAACGAGCACAAAGATGCTGCAGGCGAAGGACA
GACGAAAGCGGAAGAATGA