Gcaud3612.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3612.t2
Unique Name	Gcaud3612.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	620

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_721_length_19109_cov_4.832422	contig	NODE_721_length_19109_cov_4.832422:10179..12038 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3612	Gcaud3612	Gracilaria caudata M_176_S67 male	gene	NODE_721_length_19109_cov_4.832422 10179..12038 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3612.t2.stop1	Gcaud3612.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_721_length_19109_cov_4.832422 10179..10181 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3612.t2.CDS1	Gcaud3612.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_721_length_19109_cov_4.832422 10179..12038 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3612.t2.exon1	Gcaud3612.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_721_length_19109_cov_4.832422 10179..12038 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3612.t2.start1	Gcaud3612.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_721_length_19109_cov_4.832422 12036..12038 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3612.t2	Gcaud3612.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_721_length_19109_cov_4.832422 10179..12038 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_721_length_19109_cov_4.832422:10179..12038-
coding sequence from alignment at NODE_721_length_19109_cov_4.832422:10179..12038-

mRNA sequence

>Gcaud3612.t2 ID=Gcaud3612.t2|Name=Gcaud3612.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=620bp
MLSSSAVSGSSGIPQRTICTGQESNVSVSNALQTLLTTFVLYSSRPPNNA
FARHQYETMRNDCMDTLSQIFVHYIGPLSSTSSDSSTAEENERTVNLALS
VLQLHKGEELGSWYLTTTMDEIRGPEHEQSSEVGLWEELKRIAEFRSLTY
NDPGGMFRYIFTQHEQLRHFLRSHGDDCWAAAQRGIDEFLNDFGEDLSPG
EQVIQTVLSFLKRAVGFLASSTGKAMLDMCLQLAQFAILAQMSQVERGLR
ISVLQELNALGPTFEGEPGENGYTRTFSGGKKYRTSRLRREFLRRNTALN
PHAVEMDVVTVALSYKHFWRNSKQKITQPDFEAIASFIEASRGSRIRFWV
DSKLPPTNDGSFERWLTRGIRPYCRYLTLICPSAKASQGRFWIANEKYLA
TAGRGIFYFRGDEIQPDEILFDKGHEDFKKLAKLLVKLVIGEEELPPGVN
TEDEGKVHQWALGILGSRQNDLVNQIGPKADELHFPDFDESRAISHVQDV
IRGNGPHTLPLIPGRIWNKYNPLMKGSDGDQLHKMVGWIGLVHPDEKENI
YFLHVFLLKDLNEPSAAVLRVRLQKPYDEQDGNFIEEKVLMMMESTALRK
MHPVAVPVTCEWEVFSGTQ*

spliced messenger RNA

>Gcaud3612.t2 ID=Gcaud3612.t2|Name=Gcaud3612.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1860bp|location=Sequence derived from alignment at NODE_721_length_19109_cov_4.832422:10179..12038- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTCATCATCAGCAGTTAGTGGTTCTTCTGGAATTCCACAACGAAC
CATTTGTACTGGCCAGGAAAGCAATGTTTCTGTGTCAAATGCTCTTCAAA
CTCTATTAACAACTTTCGTCCTCTACTCTTCTAGACCTCCAAATAATGCC
TTTGCTCGACATCAGTATGAAACAATGAGAAACGACTGCATGGACACACT
TTCGCAGATCTTCGTACACTATATTGGCCCCCTTTCCTCAACCTCCTCAG
ATTCATCTACCGCTGAGGAAAACGAGAGAACCGTTAACTTGGCTTTATCT
GTTCTTCAACTCCATAAGGGTGAGGAACTTGGCTCTTGGTATCTCACCAC
AACGATGGATGAGATACGTGGACCAGAACACGAACAAAGTAGCGAAGTTG
GATTGTGGGAAGAACTCAAGAGGATTGCAGAGTTTCGCTCGTTGACCTAC
AATGACCCAGGCGGAATGTTCCGATATATTTTCACTCAGCATGAGCAGCT
GAGGCATTTCCTCCGGTCCCACGGGGATGATTGTTGGGCCGCGGCACAGA
GAGGTATTGACGAGTTTTTGAATGACTTTGGGGAAGATTTATCTCCTGGT
GAACAAGTTATTCAAACCGTTCTTTCTTTTCTCAAACGCGCCGTGGGGTT
TTTGGCAAGCTCCACAGGAAAAGCGATGTTAGACATGTGCTTACAGCTTG
CGCAGTTCGCCATACTGGCACAAATGTCGCAAGTGGAACGGGGGCTTAGA
ATTTCAGTACTTCAAGAACTCAACGCTCTTGGTCCCACCTTCGAGGGCGA
ACCCGGCGAAAATGGTTATACCAGAACATTTAGTGGAGGGAAGAAGTACA
GAACCTCGCGACTTCGAAGAGAATTTCTGCGAAGAAACACTGCCTTAAAC
CCACATGCCGTGGAAATGGACGTCGTGACGGTTGCTCTTTCTTACAAACA
CTTCTGGCGAAACTCGAAGCAAAAGATAACCCAGCCTGACTTCGAAGCAA
TTGCATCTTTCATCGAGGCAAGTCGGGGTTCCCGGATACGATTCTGGGTT
GACAGCAAGTTGCCACCTACCAATGATGGTTCGTTTGAACGATGGCTGAC
AAGAGGAATAAGACCATATTGTCGCTATCTGACGCTTATCTGCCCTTCTG
CCAAAGCATCACAGGGAAGGTTTTGGATAGCAAACGAGAAGTATCTGGCC
ACTGCAGGCAGGGGAATTTTCTATTTCCGTGGAGATGAGATACAGCCTGA
TGAGATACTGTTCGACAAGGGCCATGAAGATTTTAAGAAGCTTGCAAAGC
TATTGGTGAAGCTAGTCATCGGAGAAGAAGAACTTCCGCCAGGAGTCAAC
ACTGAAGACGAAGGAAAGGTACATCAATGGGCGTTAGGTATTCTCGGAAG
CCGCCAAAATGATCTCGTTAATCAGATTGGTCCGAAAGCTGATGAACTCC
ATTTTCCTGACTTTGACGAAAGCAGAGCAATTAGTCACGTGCAAGACGTC
ATTAGAGGAAATGGACCGCACACACTACCACTGATTCCTGGAAGAATATG
GAACAAGTACAATCCTTTGATGAAAGGTAGTGATGGTGACCAACTGCATA
AGATGGTTGGGTGGATTGGTTTAGTACACCCCGACGAGAAGGAGAACATA
TACTTCTTGCATGTTTTCCTTTTGAAAGACTTAAATGAACCCAGTGCCGC
TGTTTTGCGCGTGCGTCTACAGAAACCATATGATGAACAAGATGGGAATT
TCATCGAGGAGAAAGTTCTGATGATGATGGAAAGCACTGCGTTACGCAAA
ATGCATCCGGTGGCAGTACCCGTCACGTGTGAATGGGAAGTCTTCTCCGG
CACACAATGA

protein sequence of Gcaud3612.t2

>Gcaud3612.t2 ID=Gcaud3612.t2|Name=Gcaud3612.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=620bp
MLSSSAVSGSSGIPQRTICTGQESNVSVSNALQTLLTTFVLYSSRPPNNA
FARHQYETMRNDCMDTLSQIFVHYIGPLSSTSSDSSTAEENERTVNLALS
VLQLHKGEELGSWYLTTTMDEIRGPEHEQSSEVGLWEELKRIAEFRSLTY
NDPGGMFRYIFTQHEQLRHFLRSHGDDCWAAAQRGIDEFLNDFGEDLSPG
EQVIQTVLSFLKRAVGFLASSTGKAMLDMCLQLAQFAILAQMSQVERGLR
ISVLQELNALGPTFEGEPGENGYTRTFSGGKKYRTSRLRREFLRRNTALN
PHAVEMDVVTVALSYKHFWRNSKQKITQPDFEAIASFIEASRGSRIRFWV
DSKLPPTNDGSFERWLTRGIRPYCRYLTLICPSAKASQGRFWIANEKYLA
TAGRGIFYFRGDEIQPDEILFDKGHEDFKKLAKLLVKLVIGEEELPPGVN
TEDEGKVHQWALGILGSRQNDLVNQIGPKADELHFPDFDESRAISHVQDV
IRGNGPHTLPLIPGRIWNKYNPLMKGSDGDQLHKMVGWIGLVHPDEKENI
YFLHVFLLKDLNEPSAAVLRVRLQKPYDEQDGNFIEEKVLMMMESTALRK
MHPVAVPVTCEWEVFSGTQ*

mRNA from alignment at NODE_721_length_19109_cov_4.832422:10179..12038-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3612.t2 ID=Gcaud3612.t2|Name=Gcaud3612.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1860bp|location=Sequence derived from alignment at NODE_721_length_19109_cov_4.832422:10179..12038- (Gracilaria caudata M_176_S67 male)
ATGCTTTCATCATCAGCAGTTAGTGGTTCTTCTGGAATTCCACAACGAAC
CATTTGTACTGGCCAGGAAAGCAATGTTTCTGTGTCAAATGCTCTTCAAA
CTCTATTAACAACTTTCGTCCTCTACTCTTCTAGACCTCCAAATAATGCC
TTTGCTCGACATCAGTATGAAACAATGAGAAACGACTGCATGGACACACT
TTCGCAGATCTTCGTACACTATATTGGCCCCCTTTCCTCAACCTCCTCAG
ATTCATCTACCGCTGAGGAAAACGAGAGAACCGTTAACTTGGCTTTATCT
GTTCTTCAACTCCATAAGGGTGAGGAACTTGGCTCTTGGTATCTCACCAC
AACGATGGATGAGATACGTGGACCAGAACACGAACAAAGTAGCGAAGTTG
GATTGTGGGAAGAACTCAAGAGGATTGCAGAGTTTCGCTCGTTGACCTAC
AATGACCCAGGCGGAATGTTCCGATATATTTTCACTCAGCATGAGCAGCT
GAGGCATTTCCTCCGGTCCCACGGGGATGATTGTTGGGCCGCGGCACAGA
GAGGTATTGACGAGTTTTTGAATGACTTTGGGGAAGATTTATCTCCTGGT
GAACAAGTTATTCAAACCGTTCTTTCTTTTCTCAAACGCGCCGTGGGGTT
TTTGGCAAGCTCCACAGGAAAAGCGATGTTAGACATGTGCTTACAGCTTG
CGCAGTTCGCCATACTGGCACAAATGTCGCAAGTGGAACGGGGGCTTAGA
ATTTCAGTACTTCAAGAACTCAACGCTCTTGGTCCCACCTTCGAGGGCGA
ACCCGGCGAAAATGGTTATACCAGAACATTTAGTGGAGGGAAGAAGTACA
GAACCTCGCGACTTCGAAGAGAATTTCTGCGAAGAAACACTGCCTTAAAC
CCACATGCCGTGGAAATGGACGTCGTGACGGTTGCTCTTTCTTACAAACA
CTTCTGGCGAAACTCGAAGCAAAAGATAACCCAGCCTGACTTCGAAGCAA
TTGCATCTTTCATCGAGGCAAGTCGGGGTTCCCGGATACGATTCTGGGTT
GACAGCAAGTTGCCACCTACCAATGATGGTTCGTTTGAACGATGGCTGAC
AAGAGGAATAAGACCATATTGTCGCTATCTGACGCTTATCTGCCCTTCTG
CCAAAGCATCACAGGGAAGGTTTTGGATAGCAAACGAGAAGTATCTGGCC
ACTGCAGGCAGGGGAATTTTCTATTTCCGTGGAGATGAGATACAGCCTGA
TGAGATACTGTTCGACAAGGGCCATGAAGATTTTAAGAAGCTTGCAAAGC
TATTGGTGAAGCTAGTCATCGGAGAAGAAGAACTTCCGCCAGGAGTCAAC
ACTGAAGACGAAGGAAAGGTACATCAATGGGCGTTAGGTATTCTCGGAAG
CCGCCAAAATGATCTCGTTAATCAGATTGGTCCGAAAGCTGATGAACTCC
ATTTTCCTGACTTTGACGAAAGCAGAGCAATTAGTCACGTGCAAGACGTC
ATTAGAGGAAATGGACCGCACACACTACCACTGATTCCTGGAAGAATATG
GAACAAGTACAATCCTTTGATGAAAGGTAGTGATGGTGACCAACTGCATA
AGATGGTTGGGTGGATTGGTTTAGTACACCCCGACGAGAAGGAGAACATA
TACTTCTTGCATGTTTTCCTTTTGAAAGACTTAAATGAACCCAGTGCCGC
TGTTTTGCGCGTGCGTCTACAGAAACCATATGATGAACAAGATGGGAATT
TCATCGAGGAGAAAGTTCTGATGATGATGGAAAGCACTGCGTTACGCAAA
ATGCATCCGGTGGCAGTACCCGTCACGTGTGAATGGGAAGTCTTCTCCGG
CACACAATGA

Coding sequence (CDS) from alignment at NODE_721_length_19109_cov_4.832422:10179..12038-

>Gcaud3612.t2 ID=Gcaud3612.t2|Name=Gcaud3612.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1860bp|location=Sequence derived from alignment at NODE_721_length_19109_cov_4.832422:10179..12038- (Gracilaria caudata M_176_S67 male)
ATGCTTTCATCATCAGCAGTTAGTGGTTCTTCTGGAATTCCACAACGAAC
CATTTGTACTGGCCAGGAAAGCAATGTTTCTGTGTCAAATGCTCTTCAAA
CTCTATTAACAACTTTCGTCCTCTACTCTTCTAGACCTCCAAATAATGCC
TTTGCTCGACATCAGTATGAAACAATGAGAAACGACTGCATGGACACACT
TTCGCAGATCTTCGTACACTATATTGGCCCCCTTTCCTCAACCTCCTCAG
ATTCATCTACCGCTGAGGAAAACGAGAGAACCGTTAACTTGGCTTTATCT
GTTCTTCAACTCCATAAGGGTGAGGAACTTGGCTCTTGGTATCTCACCAC
AACGATGGATGAGATACGTGGACCAGAACACGAACAAAGTAGCGAAGTTG
GATTGTGGGAAGAACTCAAGAGGATTGCAGAGTTTCGCTCGTTGACCTAC
AATGACCCAGGCGGAATGTTCCGATATATTTTCACTCAGCATGAGCAGCT
GAGGCATTTCCTCCGGTCCCACGGGGATGATTGTTGGGCCGCGGCACAGA
GAGGTATTGACGAGTTTTTGAATGACTTTGGGGAAGATTTATCTCCTGGT
GAACAAGTTATTCAAACCGTTCTTTCTTTTCTCAAACGCGCCGTGGGGTT
TTTGGCAAGCTCCACAGGAAAAGCGATGTTAGACATGTGCTTACAGCTTG
CGCAGTTCGCCATACTGGCACAAATGTCGCAAGTGGAACGGGGGCTTAGA
ATTTCAGTACTTCAAGAACTCAACGCTCTTGGTCCCACCTTCGAGGGCGA
ACCCGGCGAAAATGGTTATACCAGAACATTTAGTGGAGGGAAGAAGTACA
GAACCTCGCGACTTCGAAGAGAATTTCTGCGAAGAAACACTGCCTTAAAC
CCACATGCCGTGGAAATGGACGTCGTGACGGTTGCTCTTTCTTACAAACA
CTTCTGGCGAAACTCGAAGCAAAAGATAACCCAGCCTGACTTCGAAGCAA
TTGCATCTTTCATCGAGGCAAGTCGGGGTTCCCGGATACGATTCTGGGTT
GACAGCAAGTTGCCACCTACCAATGATGGTTCGTTTGAACGATGGCTGAC
AAGAGGAATAAGACCATATTGTCGCTATCTGACGCTTATCTGCCCTTCTG
CCAAAGCATCACAGGGAAGGTTTTGGATAGCAAACGAGAAGTATCTGGCC
ACTGCAGGCAGGGGAATTTTCTATTTCCGTGGAGATGAGATACAGCCTGA
TGAGATACTGTTCGACAAGGGCCATGAAGATTTTAAGAAGCTTGCAAAGC
TATTGGTGAAGCTAGTCATCGGAGAAGAAGAACTTCCGCCAGGAGTCAAC
ACTGAAGACGAAGGAAAGGTACATCAATGGGCGTTAGGTATTCTCGGAAG
CCGCCAAAATGATCTCGTTAATCAGATTGGTCCGAAAGCTGATGAACTCC
ATTTTCCTGACTTTGACGAAAGCAGAGCAATTAGTCACGTGCAAGACGTC
ATTAGAGGAAATGGACCGCACACACTACCACTGATTCCTGGAAGAATATG
GAACAAGTACAATCCTTTGATGAAAGGTAGTGATGGTGACCAACTGCATA
AGATGGTTGGGTGGATTGGTTTAGTACACCCCGACGAGAAGGAGAACATA
TACTTCTTGCATGTTTTCCTTTTGAAAGACTTAAATGAACCCAGTGCCGC
TGTTTTGCGCGTGCGTCTACAGAAACCATATGATGAACAAGATGGGAATT
TCATCGAGGAGAAAGTTCTGATGATGATGGAAAGCACTGCGTTACGCAAA
ATGCATCCGGTGGCAGTACCCGTCACGTGTGAATGGGAAGTCTTCTCCGG
CACACAATGA