Gcaud3610.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3610.t1
Unique NameGcaud3610.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length188
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_721_length_19109_cov_4.832422contigNODE_721_length_19109_cov_4.832422:3449..5687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3610Gcaud3610Gracilaria caudata M_176_S67 malegeneNODE_721_length_19109_cov_4.832422 3449..5687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3610.t1Gcaud3610.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_721_length_19109_cov_4.832422 3449..5687 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3610.t1.start1Gcaud3610.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_721_length_19109_cov_4.832422 3449..3451 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3610.t1.CDS1Gcaud3610.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_721_length_19109_cov_4.832422 3449..3528 +
Gcaud3610.t1.CDS2Gcaud3610.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_721_length_19109_cov_4.832422 3613..3719 +
Gcaud3610.t1.CDS3Gcaud3610.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_721_length_19109_cov_4.832422 5214..5295 +
Gcaud3610.t1.CDS4Gcaud3610.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_721_length_19109_cov_4.832422 5393..5687 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3610.t1.exon1Gcaud3610.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_721_length_19109_cov_4.832422 3449..3528 +
Gcaud3610.t1.exon2Gcaud3610.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_721_length_19109_cov_4.832422 3613..3719 +
Gcaud3610.t1.exon3Gcaud3610.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_721_length_19109_cov_4.832422 5214..5295 +
Gcaud3610.t1.exon4Gcaud3610.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_721_length_19109_cov_4.832422 5393..5687 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3610.t1.intron1Gcaud3610.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_721_length_19109_cov_4.832422 3529..3612 +
Gcaud3610.t1.intron2Gcaud3610.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_721_length_19109_cov_4.832422 3720..5213 +
Gcaud3610.t1.intron3Gcaud3610.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_721_length_19109_cov_4.832422 5296..5392 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3610.t1.stop1Gcaud3610.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_721_length_19109_cov_4.832422 5685..5687 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3610.t1 ID=Gcaud3610.t1|Name=Gcaud3610.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=188bp
MELRCTEDDLQSWSLVKIRDAKDDIESSQLWVLFAVAFHVSLYAYRFFLR
HHVHAFATICENRKSTIEDEAKGESSGAGKLDEAHREVKSPPRGKYPLES
AKDDLQVAVKKLEELRTLVVGTVLAGGGVTLYLTDNPGLSFLILLSGLSI
EWYKQNLDTKHAELKRCCNILQRLRDKRECSKSSLTP*
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spliced messenger RNA

>Gcaud3610.t1 ID=Gcaud3610.t1|Name=Gcaud3610.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=564bp|location=Sequence derived from alignment at NODE_721_length_19109_cov_4.832422:3449..5687+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACTAAGATGCACCGAAGATGATTTACAGTCATGGTCTCTTGTGAA
AATCAGAGACGCCAAAGATGACATTGAAAGCTCGCAACTATGGGTTCTTT
TTGCCGTCGCGTTCCATGTTTCTCTGTATGCGTATCGCTTCTTTCTCAGA
CACCATGTACATGCTTTTGCAACCATCTGTGAAAATCGCAAGTCTACAAT
AGAAGATGAGGCTAAAGGAGAAAGCAGTGGTGCTGGCAAGCTCGATGAAG
CGCACCGAGAAGTGAAATCACCACCCAGAGGCAAATATCCACTGGAGAGT
GCCAAGGATGACTTGCAGGTAGCTGTCAAGAAGTTGGAAGAATTGCGAAC
TCTTGTTGTGGGCACAGTTCTTGCTGGTGGTGGTGTTACTCTTTATTTAA
CGGACAATCCAGGGCTTTCTTTCTTGATTCTTCTCTCCGGACTTTCAATA
GAATGGTATAAGCAAAACCTTGATACAAAGCATGCCGAACTCAAACGTTG
CTGCAATATTCTACAACGTCTGCGGGACAAGAGAGAATGCAGCAAAAGTT
CGTTGACTCCATAG
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protein sequence of Gcaud3610.t1

>Gcaud3610.t1 ID=Gcaud3610.t1|Name=Gcaud3610.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=188bp
MELRCTEDDLQSWSLVKIRDAKDDIESSQLWVLFAVAFHVSLYAYRFFLR
HHVHAFATICENRKSTIEDEAKGESSGAGKLDEAHREVKSPPRGKYPLES
AKDDLQVAVKKLEELRTLVVGTVLAGGGVTLYLTDNPGLSFLILLSGLSI
EWYKQNLDTKHAELKRCCNILQRLRDKRECSKSSLTP*
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mRNA from alignment at NODE_721_length_19109_cov_4.832422:3449..5687+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3610.t1 ID=Gcaud3610.t1|Name=Gcaud3610.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2239bp|location=Sequence derived from alignment at NODE_721_length_19109_cov_4.832422:3449..5687+ (Gracilaria caudata M_176_S67 male)
ATGGAACTAAGATGCACCGAAGATGATTTACAGTCATGGTCTCTTGTGAA
AATCAGAGACGCCAAAGATGACATTGAAAGGTCTGTTGACATCACTCAAG
AGGTTCTTGTATACGCATGGCCCTTATCGTTCACAACAATCTACATGTTT
CTGTATTTCGCCAGCTCGCAACTATGGGTTCTTTTTGCCGTCGCGTTCCA
TGTTTCTCTGTATGCGTATCGCTTCTTTCTCAGACACCATGTACATGCTT
TTGCAACCATCTGTGAAAATCGTGCGCGCCGAGCAGCACAAGTAGATGAC
ACGGAGTGCAGTTGTGACTGCCTGGGTGCTGCAAGCCGACGAAATTACAT
TTCGGCTTCCACATAGTAGCTCTTTCCCTATGAGTTAGTCTAAGCCCCGA
GGGCTTGATCAAGAGGGATGCCTCTTCGGCGATACACTTCGCTTTTCTAC
AAGGGTGTATGAGCAGAAGCATTGACAGCAACATGGGTCTTCTTGGTTCG
ACGCACTGATTCGGCGCAAAGCGCACAGCGTCACAAAGCTAGGGGTTGGC
CATATTGGCACCGCCATTACTTTGAACCCGTTTTTGTCCTTTTGGCATTA
ATGAAACCCTGCGCTCCCGCCTACATGAGATGAACTAGAGGACAGAGAAG
AGTACCGTTGTTTCAATGTTGCAAGGATGTGATTCGTCTCTCGCCCGAGA
CGGTTCATCCAACTGCTCACCTTGTCAATTCATTTTTGGGTGTAGGTTTG
GAGACATGGAACCAACTTTTTACGACGGCGAAGGAGTGGGCGGCGGCAGT
AAGGCGGATTGGCAGTAAGGCAAAGTGGCAGTAAGGACTGAGCGTGTGAC
AAACGATTTTTGACGGTATGTGATTGGTATCGGTCGAGGGGCGGGAGGGA
GCGGGGGGAGTAGGAGGGTGGGGGTTGCGCTTTTCTCCAGCGTCCGAAAA
GCAAAGTTCGTCGAAAGTAAACGCTTTCCAGAGCGACACACGAAACGAAA
ACTCCTTGTAGATACATATGGAATCTCTCACGACGTGCTGCGTTCAGCTC
TCACAACCATTTGTGAACAGTAGTAGCAATATGTTTTCGTTGGAATCGAA
CTCAATGTTGGCTGGGTTGGCGGAGTATTCGGACAGGGTTCGCGTTTGAT
AGTTGCAAGACAATTGTTGTTACGTAAGCGGAATATGGAGATTGATTCCA
CTGATATCTCCTTCACGTAGACGGTGCTGATGGCGTACAGCCTAGTTTTC
AGTTCCGTCCGATGCCTAACTTTCAAGGCCAACGTGATGCGAAGCTCACG
TCACAACATCTTATAAGAGCTTTTGAGGGCAATATATCACAAATATGTTC
GTCTGCTTGCACAGAATCCTTTCCCTATCAAACACAGCGACAGCTCATAT
CCAAAGCAACCTTTCAGAACTGCGGGTTTTTGCTGAGCGACCACTTTGTG
GTTCTCTCAACATGACGATTACGGCTGATTCTAAGGTGTGCAAGAACAGC
ATGATACAGCCATGTTTGCTAATCGTTCTCATTGCTTCTCTTTGCTTCCA
AACCCCTGGAAAGGTCTCGAAATACCCCAACATGTATGCCCGTTTGAAAG
CTTGGCTCGATCAAAATAGTTGACAGACGCGTGCGTAATTCGTGACGACG
ACGCTACGACGGGTTTCACCATTTCGTTATCGTATTGCCTAAACGATTCG
GATCATGTTGAGTATTGCGAACAAACTTGCACGCCATCATTTTGCGCTCT
GAACTCAGTGATTAGGCAAGTCTACAATAGAAGATGAGGCTAAAGGAGAA
AGCAGTGGTGCTGGCAAGCTCGATGAAGCGCACCGAGAAGTGAAATCGTT
GATTGAAACAGATGGACATTGGAGGAATTACTGAAGTGCGTGAAGGAGGC
AAGAACTCGTCTTACAGACCTTCAACATAGCGAGCGGTTGTTAGACCACC
CAGAGGCAAATATCCACTGGAGAGTGCCAAGGATGACTTGCAGGTAGCTG
TCAAGAAGTTGGAAGAATTGCGAACTCTTGTTGTGGGCACAGTTCTTGCT
GGTGGTGGTGTTACTCTTTATTTAACGGACAATCCAGGGCTTTCTTTCTT
GATTCTTCTCTCCGGACTTTCAATAGAATGGTATAAGCAAAACCTTGATA
CAAAGCATGCCGAACTCAAACGTTGCTGCAATATTCTACAACGTCTGCGG
GACAAGAGAGAATGCAGCAAAAGTTCGTTGACTCCATAG
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Coding sequence (CDS) from alignment at NODE_721_length_19109_cov_4.832422:3449..5687+

>Gcaud3610.t1 ID=Gcaud3610.t1|Name=Gcaud3610.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=564bp|location=Sequence derived from alignment at NODE_721_length_19109_cov_4.832422:3449..5687+ (Gracilaria caudata M_176_S67 male)
ATGGAACTAAGATGCACCGAAGATGATTTACAGTCATGGTCTCTTGTGAA
AATCAGAGACGCCAAAGATGACATTGAAAGCTCGCAACTATGGGTTCTTT
TTGCCGTCGCGTTCCATGTTTCTCTGTATGCGTATCGCTTCTTTCTCAGA
CACCATGTACATGCTTTTGCAACCATCTGTGAAAATCGCAAGTCTACAAT
AGAAGATGAGGCTAAAGGAGAAAGCAGTGGTGCTGGCAAGCTCGATGAAG
CGCACCGAGAAGTGAAATCACCACCCAGAGGCAAATATCCACTGGAGAGT
GCCAAGGATGACTTGCAGGTAGCTGTCAAGAAGTTGGAAGAATTGCGAAC
TCTTGTTGTGGGCACAGTTCTTGCTGGTGGTGGTGTTACTCTTTATTTAA
CGGACAATCCAGGGCTTTCTTTCTTGATTCTTCTCTCCGGACTTTCAATA
GAATGGTATAAGCAAAACCTTGATACAAAGCATGCCGAACTCAAACGTTG
CTGCAATATTCTACAACGTCTGCGGGACAAGAGAGAATGCAGCAAAAGTT
CGTTGACTCCATAG
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