Gcaud3609.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3609.t1
Unique Name	Gcaud3609.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	602

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_721_length_19109_cov_4.832422	contig	NODE_721_length_19109_cov_4.832422:747..2552 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7G3X5
PFAMs	AMOP,SRCR,VWD,WSC
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K22017
Evalue	4.13e-20
EggNOG OGs	KOG4291@1\|root,KOG4291@2759\|Eukaryota
Description	Sushi, nidogen and EGF-like
COG category	KLT
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3609	Gcaud3609	Gracilaria caudata M_176_S67 male	gene	NODE_721_length_19109_cov_4.832422 747..2552 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3609.t1.start1	Gcaud3609.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_721_length_19109_cov_4.832422 747..749 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3609.t1.CDS1	Gcaud3609.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_721_length_19109_cov_4.832422 747..2552 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3609.t1.exon1	Gcaud3609.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_721_length_19109_cov_4.832422 747..2552 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3609.t1.stop1	Gcaud3609.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_721_length_19109_cov_4.832422 2550..2552 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3609.t1	Gcaud3609.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_721_length_19109_cov_4.832422 747..2552 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_721_length_19109_cov_4.832422:747..2552+
coding sequence from alignment at NODE_721_length_19109_cov_4.832422:747..2552+

mRNA sequence

>Gcaud3609.t1 ID=Gcaud3609.t1|Name=Gcaud3609.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=602bp
MDPHIRTFDGLGYECQASGEFVMSKGKSFEIQARFFGESARGSVITGLAS
KVENSPVIQFSMAKDSNEKTIPIASCPVLFLADNEIRILSSNVQDIRGVS
VLVKSKLITVVYPNNIFYEMRVSKSSSFGCFFSRFLFKIPSSLAKDEDIL
GLLGTPNKKLDDDWRNRDGKGLKIPLFTFGKEAYDYCAQNWCLTSEKKSL
FFYEEGRSFDSISKCSRKYEKLDLETFTPKLRRLRAICGSNRECLVDGMV
GTEEDARASLAEQEELKGQGIIFPSVTTEIFSIYPTKTYRMGPIQIKLVI
DLSNVEDKARFVKTFKAFSINAKTKERLASPDIILRDSGEGADEEKNDKI
YSGYTDAYLPGVLNEWSYVALPFSDTGAINDESLIFESEKKVETFSYSSG
VPASPAFDRTEKNIMSLSRLSLQLKKRARWSEDTKLSVRFGGEVVGPDCG
NTEEVETWFTGLKKVSISGNYVRVEVTSITLLRESKSYDIGIDLKKAQSN
GLFESGEKVRASVFADVRDLKEPETLTLGSRTLFVDAGTQRLSLFGFRYY
TGYFVYRPGGKHNGCASTLVGHVDLSVVGDGKDLRVEIIPAGDTAKTNFR
F*

spliced messenger RNA

>Gcaud3609.t1 ID=Gcaud3609.t1|Name=Gcaud3609.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1806bp|location=Sequence derived from alignment at NODE_721_length_19109_cov_4.832422:747..2552+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCCACACATTCGCACCTTTGACGGACTGGGATATGAATGTCAGGC
ATCTGGGGAGTTTGTCATGTCGAAAGGAAAGTCATTTGAGATCCAAGCCC
GATTCTTTGGAGAGTCAGCTCGGGGAAGTGTGATTACCGGTTTAGCATCG
AAGGTAGAAAACAGCCCTGTTATCCAGTTCTCCATGGCGAAGGATTCTAA
TGAGAAAACTATTCCGATTGCCTCTTGTCCCGTTCTGTTTCTTGCAGACA
ACGAAATAAGGATTCTTTCATCAAATGTGCAAGATATTAGAGGTGTTTCT
GTTTTGGTTAAGTCCAAACTCATCACAGTTGTGTACCCAAACAACATCTT
CTACGAGATGCGAGTGTCAAAATCGTCATCTTTTGGTTGCTTCTTCTCGC
GGTTCTTGTTCAAAATTCCCTCCTCGTTAGCAAAGGACGAGGACATTCTT
GGATTGCTAGGAACGCCGAATAAGAAACTGGATGACGATTGGAGAAACCG
CGATGGAAAAGGTTTAAAGATACCACTATTCACGTTTGGAAAGGAAGCGT
ATGACTATTGCGCACAGAACTGGTGTCTTACATCCGAGAAGAAATCTCTA
TTCTTCTACGAGGAAGGAAGAAGTTTTGATTCGATATCAAAATGTTCTCG
CAAGTATGAAAAACTTGATTTAGAGACTTTCACACCTAAACTGCGGAGAT
TAAGAGCTATCTGCGGAAGTAATAGAGAATGTCTCGTGGACGGCATGGTA
GGTACAGAAGAAGATGCCCGTGCCTCTCTGGCGGAACAAGAGGAACTCAA
GGGACAAGGCATCATATTTCCTTCAGTGACAACAGAAATATTTTCCATAT
ATCCGACAAAAACGTATCGCATGGGTCCCATACAGATCAAATTGGTTATT
GACCTATCTAATGTGGAGGATAAAGCGAGATTTGTGAAGACATTCAAGGC
ATTTTCCATCAACGCGAAAACAAAAGAGCGTCTTGCGTCACCGGATATCA
TTCTGAGGGACAGCGGAGAAGGCGCAGATGAAGAAAAGAATGATAAGATT
TACTCAGGATACACTGACGCTTACCTACCCGGGGTCTTGAATGAATGGAG
TTATGTAGCGCTTCCGTTCAGTGACACTGGAGCAATCAACGATGAGTCTT
TGATATTTGAATCCGAAAAGAAGGTAGAAACGTTCAGCTATAGTTCTGGC
GTACCCGCATCACCAGCATTTGACAGAACGGAAAAGAATATAATGAGCTT
AAGCCGGCTTTCCCTGCAGCTGAAGAAAAGGGCTAGATGGAGTGAAGATA
CCAAACTTTCAGTTCGCTTCGGTGGCGAAGTTGTGGGCCCTGATTGCGGG
AATACTGAGGAGGTAGAAACCTGGTTCACAGGTTTGAAGAAGGTATCAAT
ATCTGGCAATTATGTTCGGGTAGAAGTGACTTCGATTACGTTGCTTCGCG
AATCAAAGAGTTATGATATCGGCATTGACTTGAAAAAAGCACAAAGCAAT
GGGCTTTTTGAAAGTGGAGAAAAGGTGAGAGCTAGTGTTTTTGCGGATGT
GAGGGACTTGAAGGAGCCGGAGACACTTACATTGGGGTCCCGAACGCTTT
TCGTTGATGCTGGCACCCAGAGATTATCTTTGTTCGGGTTTAGATATTAC
ACGGGGTACTTTGTGTACCGGCCTGGTGGGAAGCATAATGGATGTGCTTC
CACATTGGTTGGGCATGTGGACCTTTCGGTTGTTGGAGATGGTAAGGATT
TGCGGGTTGAGATTATTCCTGCTGGTGATACTGCCAAGACCAACTTCAGG
TTCTGA

protein sequence of Gcaud3609.t1

>Gcaud3609.t1 ID=Gcaud3609.t1|Name=Gcaud3609.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=602bp
MDPHIRTFDGLGYECQASGEFVMSKGKSFEIQARFFGESARGSVITGLAS
KVENSPVIQFSMAKDSNEKTIPIASCPVLFLADNEIRILSSNVQDIRGVS
VLVKSKLITVVYPNNIFYEMRVSKSSSFGCFFSRFLFKIPSSLAKDEDIL
GLLGTPNKKLDDDWRNRDGKGLKIPLFTFGKEAYDYCAQNWCLTSEKKSL
FFYEEGRSFDSISKCSRKYEKLDLETFTPKLRRLRAICGSNRECLVDGMV
GTEEDARASLAEQEELKGQGIIFPSVTTEIFSIYPTKTYRMGPIQIKLVI
DLSNVEDKARFVKTFKAFSINAKTKERLASPDIILRDSGEGADEEKNDKI
YSGYTDAYLPGVLNEWSYVALPFSDTGAINDESLIFESEKKVETFSYSSG
VPASPAFDRTEKNIMSLSRLSLQLKKRARWSEDTKLSVRFGGEVVGPDCG
NTEEVETWFTGLKKVSISGNYVRVEVTSITLLRESKSYDIGIDLKKAQSN
GLFESGEKVRASVFADVRDLKEPETLTLGSRTLFVDAGTQRLSLFGFRYY
TGYFVYRPGGKHNGCASTLVGHVDLSVVGDGKDLRVEIIPAGDTAKTNFR
F*

mRNA from alignment at NODE_721_length_19109_cov_4.832422:747..2552+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3609.t1 ID=Gcaud3609.t1|Name=Gcaud3609.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1806bp|location=Sequence derived from alignment at NODE_721_length_19109_cov_4.832422:747..2552+ (Gracilaria caudata M_176_S67 male)
ATGGACCCACACATTCGCACCTTTGACGGACTGGGATATGAATGTCAGGC
ATCTGGGGAGTTTGTCATGTCGAAAGGAAAGTCATTTGAGATCCAAGCCC
GATTCTTTGGAGAGTCAGCTCGGGGAAGTGTGATTACCGGTTTAGCATCG
AAGGTAGAAAACAGCCCTGTTATCCAGTTCTCCATGGCGAAGGATTCTAA
TGAGAAAACTATTCCGATTGCCTCTTGTCCCGTTCTGTTTCTTGCAGACA
ACGAAATAAGGATTCTTTCATCAAATGTGCAAGATATTAGAGGTGTTTCT
GTTTTGGTTAAGTCCAAACTCATCACAGTTGTGTACCCAAACAACATCTT
CTACGAGATGCGAGTGTCAAAATCGTCATCTTTTGGTTGCTTCTTCTCGC
GGTTCTTGTTCAAAATTCCCTCCTCGTTAGCAAAGGACGAGGACATTCTT
GGATTGCTAGGAACGCCGAATAAGAAACTGGATGACGATTGGAGAAACCG
CGATGGAAAAGGTTTAAAGATACCACTATTCACGTTTGGAAAGGAAGCGT
ATGACTATTGCGCACAGAACTGGTGTCTTACATCCGAGAAGAAATCTCTA
TTCTTCTACGAGGAAGGAAGAAGTTTTGATTCGATATCAAAATGTTCTCG
CAAGTATGAAAAACTTGATTTAGAGACTTTCACACCTAAACTGCGGAGAT
TAAGAGCTATCTGCGGAAGTAATAGAGAATGTCTCGTGGACGGCATGGTA
GGTACAGAAGAAGATGCCCGTGCCTCTCTGGCGGAACAAGAGGAACTCAA
GGGACAAGGCATCATATTTCCTTCAGTGACAACAGAAATATTTTCCATAT
ATCCGACAAAAACGTATCGCATGGGTCCCATACAGATCAAATTGGTTATT
GACCTATCTAATGTGGAGGATAAAGCGAGATTTGTGAAGACATTCAAGGC
ATTTTCCATCAACGCGAAAACAAAAGAGCGTCTTGCGTCACCGGATATCA
TTCTGAGGGACAGCGGAGAAGGCGCAGATGAAGAAAAGAATGATAAGATT
TACTCAGGATACACTGACGCTTACCTACCCGGGGTCTTGAATGAATGGAG
TTATGTAGCGCTTCCGTTCAGTGACACTGGAGCAATCAACGATGAGTCTT
TGATATTTGAATCCGAAAAGAAGGTAGAAACGTTCAGCTATAGTTCTGGC
GTACCCGCATCACCAGCATTTGACAGAACGGAAAAGAATATAATGAGCTT
AAGCCGGCTTTCCCTGCAGCTGAAGAAAAGGGCTAGATGGAGTGAAGATA
CCAAACTTTCAGTTCGCTTCGGTGGCGAAGTTGTGGGCCCTGATTGCGGG
AATACTGAGGAGGTAGAAACCTGGTTCACAGGTTTGAAGAAGGTATCAAT
ATCTGGCAATTATGTTCGGGTAGAAGTGACTTCGATTACGTTGCTTCGCG
AATCAAAGAGTTATGATATCGGCATTGACTTGAAAAAAGCACAAAGCAAT
GGGCTTTTTGAAAGTGGAGAAAAGGTGAGAGCTAGTGTTTTTGCGGATGT
GAGGGACTTGAAGGAGCCGGAGACACTTACATTGGGGTCCCGAACGCTTT
TCGTTGATGCTGGCACCCAGAGATTATCTTTGTTCGGGTTTAGATATTAC
ACGGGGTACTTTGTGTACCGGCCTGGTGGGAAGCATAATGGATGTGCTTC
CACATTGGTTGGGCATGTGGACCTTTCGGTTGTTGGAGATGGTAAGGATT
TGCGGGTTGAGATTATTCCTGCTGGTGATACTGCCAAGACCAACTTCAGG
TTCTGA

Coding sequence (CDS) from alignment at NODE_721_length_19109_cov_4.832422:747..2552+

>Gcaud3609.t1 ID=Gcaud3609.t1|Name=Gcaud3609.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1806bp|location=Sequence derived from alignment at NODE_721_length_19109_cov_4.832422:747..2552+ (Gracilaria caudata M_176_S67 male)
ATGGACCCACACATTCGCACCTTTGACGGACTGGGATATGAATGTCAGGC
ATCTGGGGAGTTTGTCATGTCGAAAGGAAAGTCATTTGAGATCCAAGCCC
GATTCTTTGGAGAGTCAGCTCGGGGAAGTGTGATTACCGGTTTAGCATCG
AAGGTAGAAAACAGCCCTGTTATCCAGTTCTCCATGGCGAAGGATTCTAA
TGAGAAAACTATTCCGATTGCCTCTTGTCCCGTTCTGTTTCTTGCAGACA
ACGAAATAAGGATTCTTTCATCAAATGTGCAAGATATTAGAGGTGTTTCT
GTTTTGGTTAAGTCCAAACTCATCACAGTTGTGTACCCAAACAACATCTT
CTACGAGATGCGAGTGTCAAAATCGTCATCTTTTGGTTGCTTCTTCTCGC
GGTTCTTGTTCAAAATTCCCTCCTCGTTAGCAAAGGACGAGGACATTCTT
GGATTGCTAGGAACGCCGAATAAGAAACTGGATGACGATTGGAGAAACCG
CGATGGAAAAGGTTTAAAGATACCACTATTCACGTTTGGAAAGGAAGCGT
ATGACTATTGCGCACAGAACTGGTGTCTTACATCCGAGAAGAAATCTCTA
TTCTTCTACGAGGAAGGAAGAAGTTTTGATTCGATATCAAAATGTTCTCG
CAAGTATGAAAAACTTGATTTAGAGACTTTCACACCTAAACTGCGGAGAT
TAAGAGCTATCTGCGGAAGTAATAGAGAATGTCTCGTGGACGGCATGGTA
GGTACAGAAGAAGATGCCCGTGCCTCTCTGGCGGAACAAGAGGAACTCAA
GGGACAAGGCATCATATTTCCTTCAGTGACAACAGAAATATTTTCCATAT
ATCCGACAAAAACGTATCGCATGGGTCCCATACAGATCAAATTGGTTATT
GACCTATCTAATGTGGAGGATAAAGCGAGATTTGTGAAGACATTCAAGGC
ATTTTCCATCAACGCGAAAACAAAAGAGCGTCTTGCGTCACCGGATATCA
TTCTGAGGGACAGCGGAGAAGGCGCAGATGAAGAAAAGAATGATAAGATT
TACTCAGGATACACTGACGCTTACCTACCCGGGGTCTTGAATGAATGGAG
TTATGTAGCGCTTCCGTTCAGTGACACTGGAGCAATCAACGATGAGTCTT
TGATATTTGAATCCGAAAAGAAGGTAGAAACGTTCAGCTATAGTTCTGGC
GTACCCGCATCACCAGCATTTGACAGAACGGAAAAGAATATAATGAGCTT
AAGCCGGCTTTCCCTGCAGCTGAAGAAAAGGGCTAGATGGAGTGAAGATA
CCAAACTTTCAGTTCGCTTCGGTGGCGAAGTTGTGGGCCCTGATTGCGGG
AATACTGAGGAGGTAGAAACCTGGTTCACAGGTTTGAAGAAGGTATCAAT
ATCTGGCAATTATGTTCGGGTAGAAGTGACTTCGATTACGTTGCTTCGCG
AATCAAAGAGTTATGATATCGGCATTGACTTGAAAAAAGCACAAAGCAAT
GGGCTTTTTGAAAGTGGAGAAAAGGTGAGAGCTAGTGTTTTTGCGGATGT
GAGGGACTTGAAGGAGCCGGAGACACTTACATTGGGGTCCCGAACGCTTT
TCGTTGATGCTGGCACCCAGAGATTATCTTTGTTCGGGTTTAGATATTAC
ACGGGGTACTTTGTGTACCGGCCTGGTGGGAAGCATAATGGATGTGCTTC
CACATTGGTTGGGCATGTGGACCTTTCGGTTGTTGGAGATGGTAAGGATT
TGCGGGTTGAGATTATTCCTGCTGGTGATACTGCCAAGACCAACTTCAGG
TTCTGA