Gcaud3607.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3607.t1
Unique Name	Gcaud3607.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	235

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1613_length_9485_cov_4.809772	contig	NODE_1613_length_9485_cov_4.809772:4394..5098 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1054860.KB913030_gene5372
PFAMs	AhpC-TSA,Redoxin
Max annot lvl	201174\|Actinobacteria
Evalue	2e-46
EggNOG OGs	COG1225@1\|root,COG1225@2\|Bacteria,2H4Y3@201174\|Actinobacteria
Description	Alkyl hydroperoxide reductase
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3607	Gcaud3607	Gracilaria caudata M_176_S67 male	gene	NODE_1613_length_9485_cov_4.809772 4394..5098 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3607.t1.start1	Gcaud3607.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1613_length_9485_cov_4.809772 4394..4396 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3607.t1.CDS1	Gcaud3607.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1613_length_9485_cov_4.809772 4394..5098 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3607.t1.exon1	Gcaud3607.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1613_length_9485_cov_4.809772 4394..5098 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3607.t1.stop1	Gcaud3607.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1613_length_9485_cov_4.809772 5096..5098 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3607.t1	Gcaud3607.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1613_length_9485_cov_4.809772 4394..5098 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1613_length_9485_cov_4.809772:4394..5098+
coding sequence from alignment at NODE_1613_length_9485_cov_4.809772:4394..5098+

mRNA sequence

>Gcaud3607.t1 ID=Gcaud3607.t1|Name=Gcaud3607.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=235bp
MALVSQPPLPVLPPLAPVLEAKKKELYSILPAEFLAELERTSAELEKLFT
PTPLALNDSAPLFTLNDALGKPVSLSDLLDAHTAVVVTWYRGVWCPYCNA
TLDSLILANDHIEALGAKLVTISAQTPDESEEMIEEMQLPFHVLSDDGLK
VAEKYGIAFTVTEGIKNLYNNFGVDLDAINGNERKRKARLPVPATFVLDK
SGKVRFAYADMDYTTRAEPQDVVEAIQAIVESDE*

spliced messenger RNA

>Gcaud3607.t1 ID=Gcaud3607.t1|Name=Gcaud3607.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=705bp|location=Sequence derived from alignment at NODE_1613_length_9485_cov_4.809772:4394..5098+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCTCGTCAGTCAACCGCCGCTGCCCGTGCTGCCGCCGCTCGCGCC
CGTGCTCGAGGCCAAGAAGAAGGAGCTGTACTCCATTCTGCCCGCCGAGT
TTCTGGCCGAGCTGGAGAGAACCTCTGCCGAGCTGGAGAAGCTGTTCACC
CCGACGCCACTGGCTCTGAACGACAGCGCGCCTCTGTTCACCCTCAATGA
CGCGCTGGGAAAGCCCGTGTCGCTCTCCGACCTGCTCGACGCACACACCG
CCGTGGTGGTCACGTGGTACCGAGGAGTGTGGTGCCCGTACTGCAACGCC
ACTCTCGACTCTCTCATCCTCGCCAACGATCACATCGAGGCGCTGGGCGC
CAAGCTGGTCACCATTTCCGCGCAGACGCCCGACGAGAGCGAGGAGATGA
TCGAGGAGATGCAACTGCCGTTCCATGTGTTGAGCGACGATGGGCTCAAG
GTGGCCGAGAAGTACGGCATCGCGTTCACGGTTACGGAGGGTATCAAGAA
TCTGTACAACAACTTTGGCGTCGATTTGGATGCCATCAACGGCAATGAGC
GCAAGAGAAAGGCCAGATTGCCTGTGCCAGCCACTTTTGTGCTCGACAAG
AGCGGCAAGGTGCGCTTCGCGTATGCCGATATGGATTACACTACTCGCGC
CGAACCGCAGGACGTTGTGGAAGCCATTCAAGCAATCGTGGAGTCAGACG
AGTGA

protein sequence of Gcaud3607.t1

>Gcaud3607.t1 ID=Gcaud3607.t1|Name=Gcaud3607.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=235bp
MALVSQPPLPVLPPLAPVLEAKKKELYSILPAEFLAELERTSAELEKLFT
PTPLALNDSAPLFTLNDALGKPVSLSDLLDAHTAVVVTWYRGVWCPYCNA
TLDSLILANDHIEALGAKLVTISAQTPDESEEMIEEMQLPFHVLSDDGLK
VAEKYGIAFTVTEGIKNLYNNFGVDLDAINGNERKRKARLPVPATFVLDK
SGKVRFAYADMDYTTRAEPQDVVEAIQAIVESDE*

mRNA from alignment at NODE_1613_length_9485_cov_4.809772:4394..5098+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3607.t1 ID=Gcaud3607.t1|Name=Gcaud3607.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=705bp|location=Sequence derived from alignment at NODE_1613_length_9485_cov_4.809772:4394..5098+ (Gracilaria caudata M_176_S67 male)
ATGGCCCTCGTCAGTCAACCGCCGCTGCCCGTGCTGCCGCCGCTCGCGCC
CGTGCTCGAGGCCAAGAAGAAGGAGCTGTACTCCATTCTGCCCGCCGAGT
TTCTGGCCGAGCTGGAGAGAACCTCTGCCGAGCTGGAGAAGCTGTTCACC
CCGACGCCACTGGCTCTGAACGACAGCGCGCCTCTGTTCACCCTCAATGA
CGCGCTGGGAAAGCCCGTGTCGCTCTCCGACCTGCTCGACGCACACACCG
CCGTGGTGGTCACGTGGTACCGAGGAGTGTGGTGCCCGTACTGCAACGCC
ACTCTCGACTCTCTCATCCTCGCCAACGATCACATCGAGGCGCTGGGCGC
CAAGCTGGTCACCATTTCCGCGCAGACGCCCGACGAGAGCGAGGAGATGA
TCGAGGAGATGCAACTGCCGTTCCATGTGTTGAGCGACGATGGGCTCAAG
GTGGCCGAGAAGTACGGCATCGCGTTCACGGTTACGGAGGGTATCAAGAA
TCTGTACAACAACTTTGGCGTCGATTTGGATGCCATCAACGGCAATGAGC
GCAAGAGAAAGGCCAGATTGCCTGTGCCAGCCACTTTTGTGCTCGACAAG
AGCGGCAAGGTGCGCTTCGCGTATGCCGATATGGATTACACTACTCGCGC
CGAACCGCAGGACGTTGTGGAAGCCATTCAAGCAATCGTGGAGTCAGACG
AGTGA

Coding sequence (CDS) from alignment at NODE_1613_length_9485_cov_4.809772:4394..5098+

>Gcaud3607.t1 ID=Gcaud3607.t1|Name=Gcaud3607.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=705bp|location=Sequence derived from alignment at NODE_1613_length_9485_cov_4.809772:4394..5098+ (Gracilaria caudata M_176_S67 male)
ATGGCCCTCGTCAGTCAACCGCCGCTGCCCGTGCTGCCGCCGCTCGCGCC
CGTGCTCGAGGCCAAGAAGAAGGAGCTGTACTCCATTCTGCCCGCCGAGT
TTCTGGCCGAGCTGGAGAGAACCTCTGCCGAGCTGGAGAAGCTGTTCACC
CCGACGCCACTGGCTCTGAACGACAGCGCGCCTCTGTTCACCCTCAATGA
CGCGCTGGGAAAGCCCGTGTCGCTCTCCGACCTGCTCGACGCACACACCG
CCGTGGTGGTCACGTGGTACCGAGGAGTGTGGTGCCCGTACTGCAACGCC
ACTCTCGACTCTCTCATCCTCGCCAACGATCACATCGAGGCGCTGGGCGC
CAAGCTGGTCACCATTTCCGCGCAGACGCCCGACGAGAGCGAGGAGATGA
TCGAGGAGATGCAACTGCCGTTCCATGTGTTGAGCGACGATGGGCTCAAG
GTGGCCGAGAAGTACGGCATCGCGTTCACGGTTACGGAGGGTATCAAGAA
TCTGTACAACAACTTTGGCGTCGATTTGGATGCCATCAACGGCAATGAGC
GCAAGAGAAAGGCCAGATTGCCTGTGCCAGCCACTTTTGTGCTCGACAAG
AGCGGCAAGGTGCGCTTCGCGTATGCCGATATGGATTACACTACTCGCGC
CGAACCGCAGGACGTTGTGGAAGCCATTCAAGCAATCGTGGAGTCAGACG
AGTGA