Gcaud3604.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3604.t1
Unique Name	Gcaud3604.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	474

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3769_length_2964_cov_3.277758	contig	NODE_3769_length_2964_cov_3.277758:105..1526 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	50452.A0A087HDV0
PFAMs	RRM_1,zf-LYAR,zf-met
Max annot lvl	35493\|Streptophyta
Evalue	0.000207
EggNOG OGs	KOG2186@1\|root,KOG2186@2759\|Eukaryota,37P4W@33090\|Viridiplantae,3GZ9F@35493\|Streptophyta,3I1MW@3699\|Brassicales
Description	LYAR-type C2HC zinc finger
COG category	A

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3604	Gcaud3604	Gracilaria caudata M_176_S67 male	gene	NODE_3769_length_2964_cov_3.277758 105..1526 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3604.t1.start1	Gcaud3604.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3769_length_2964_cov_3.277758 105..107 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3604.t1.CDS1	Gcaud3604.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3769_length_2964_cov_3.277758 105..1526 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3604.t1.exon1	Gcaud3604.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3769_length_2964_cov_3.277758 105..1526 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3604.t1.stop1	Gcaud3604.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3769_length_2964_cov_3.277758 1524..1526 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3604.t1	Gcaud3604.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3769_length_2964_cov_3.277758 105..1526 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3769_length_2964_cov_3.277758:105..1526+
coding sequence from alignment at NODE_3769_length_2964_cov_3.277758:105..1526+

mRNA sequence

>Gcaud3604.t1 ID=Gcaud3604.t1|Name=Gcaud3604.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=474bp
MSHPSPADAANVSGQPPPPPPPPAPSLHQLQASFAAFTPRYQAAMHDPSS
IKPLLIPADAYFTPRCSVCAASFATIHLLEAHVRAIHPSFYASAQHASQL
ANAVSPTASSSAPHDASFLPPWLRPGDALASCAPPPVRNGAAQPFCERSV
AHPTPVVTKPDTLQYRCQLCNVSCDTMAQFTSHSAGQKHRKKADLFNAFK
RVEKRFPAECIRFEAPSLWLCSLCNTCMQAHNEVLQHMQCAKHKRLLNAA
QLNPSVRRAAAHNLPVTAIKPASVSAAMAVMQSPVSESLTPSRVSPSRQQ
DAPMQLAPTSCGTPVHGAIVKPPKSNKTAAYACAVCNVSCTSNDNLNVHL
ASARHRRKVEGSALIHNIVCNVCQITVSGAANYEAHLKGKTHAKKQQQRE
AALHKSASALLSMAPAASDVKLNAQAAEAQPVPYRSGAQGGDAPSSVALP
AGTRIAMPLRSVPYPARPSGEQS*

spliced messenger RNA

>Gcaud3604.t1 ID=Gcaud3604.t1|Name=Gcaud3604.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at NODE_3769_length_2964_cov_3.277758:105..1526+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCACCCGTCCCCCGCCGACGCGGCCAACGTGAGCGGGCAGCCGCC
GCCGCCGCCGCCCCCCCCCGCGCCCTCGCTGCACCAGCTTCAAGCCAGTT
TCGCCGCGTTCACGCCGCGCTACCAGGCCGCCATGCACGATCCCAGCTCC
ATCAAGCCGCTGCTCATCCCCGCCGACGCGTACTTCACGCCGCGTTGCTC
CGTGTGCGCCGCCTCCTTCGCCACCATCCATCTGCTGGAGGCGCACGTGC
GCGCCATCCACCCGTCGTTCTACGCGTCTGCGCAGCACGCGTCGCAGCTG
GCCAACGCCGTGTCGCCCACCGCCTCCTCCTCTGCGCCGCACGACGCCTC
CTTCCTGCCGCCGTGGCTGCGTCCCGGCGACGCGCTGGCCTCCTGCGCGC
CGCCGCCCGTGCGCAATGGCGCTGCGCAACCGTTTTGCGAGCGCAGTGTG
GCGCACCCCACGCCGGTGGTGACCAAACCGGACACTTTGCAATATCGATG
CCAGCTTTGTAATGTGTCTTGTGACACCATGGCGCAGTTTACAAGTCACT
CTGCCGGTCAGAAACATCGCAAGAAGGCCGATCTGTTCAATGCGTTCAAA
CGCGTGGAGAAACGTTTCCCCGCCGAATGCATTCGATTCGAAGCGCCCTC
GCTGTGGCTTTGTTCGCTGTGTAACACTTGCATGCAGGCGCATAATGAGG
TGTTGCAGCACATGCAATGCGCAAAGCACAAGCGTTTGTTGAACGCTGCG
CAACTCAACCCCTCTGTGCGTCGCGCAGCGGCGCACAACCTGCCGGTGAC
CGCGATCAAACCGGCGTCCGTTTCGGCCGCCATGGCTGTGATGCAGTCTC
CCGTGAGCGAGTCGCTCACACCGTCGCGTGTTTCTCCGTCTCGTCAACAA
GATGCGCCCATGCAATTGGCGCCAACTTCGTGCGGTACACCGGTGCATGG
CGCGATCGTGAAGCCGCCCAAGAGTAACAAGACTGCCGCTTACGCGTGCG
CCGTGTGTAATGTGAGCTGCACCTCAAACGATAACCTCAACGTGCATCTG
GCCAGCGCACGCCACCGAAGGAAAGTGGAAGGCTCCGCGTTGATCCACAA
CATTGTGTGTAACGTTTGTCAGATCACGGTTTCCGGCGCCGCCAACTACG
AAGCACATCTCAAGGGAAAGACACACGCCAAGAAGCAACAGCAACGAGAG
GCTGCGCTACACAAGTCGGCATCGGCGCTGCTCAGCATGGCGCCCGCCGC
AAGCGATGTGAAGCTCAATGCACAAGCTGCCGAGGCGCAGCCTGTTCCAT
ATCGTTCCGGCGCACAAGGCGGCGATGCGCCGTCGTCCGTGGCGTTGCCC
GCGGGCACACGCATTGCCATGCCGTTGCGATCTGTGCCTTACCCTGCGCG
CCCCTCTGGTGAACAGTCGTAG

protein sequence of Gcaud3604.t1

>Gcaud3604.t1 ID=Gcaud3604.t1|Name=Gcaud3604.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=474bp
MSHPSPADAANVSGQPPPPPPPPAPSLHQLQASFAAFTPRYQAAMHDPSS
IKPLLIPADAYFTPRCSVCAASFATIHLLEAHVRAIHPSFYASAQHASQL
ANAVSPTASSSAPHDASFLPPWLRPGDALASCAPPPVRNGAAQPFCERSV
AHPTPVVTKPDTLQYRCQLCNVSCDTMAQFTSHSAGQKHRKKADLFNAFK
RVEKRFPAECIRFEAPSLWLCSLCNTCMQAHNEVLQHMQCAKHKRLLNAA
QLNPSVRRAAAHNLPVTAIKPASVSAAMAVMQSPVSESLTPSRVSPSRQQ
DAPMQLAPTSCGTPVHGAIVKPPKSNKTAAYACAVCNVSCTSNDNLNVHL
ASARHRRKVEGSALIHNIVCNVCQITVSGAANYEAHLKGKTHAKKQQQRE
AALHKSASALLSMAPAASDVKLNAQAAEAQPVPYRSGAQGGDAPSSVALP
AGTRIAMPLRSVPYPARPSGEQS*

mRNA from alignment at NODE_3769_length_2964_cov_3.277758:105..1526+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3604.t1 ID=Gcaud3604.t1|Name=Gcaud3604.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at NODE_3769_length_2964_cov_3.277758:105..1526+ (Gracilaria caudata M_176_S67 male)
ATGTCGCACCCGTCCCCCGCCGACGCGGCCAACGTGAGCGGGCAGCCGCC
GCCGCCGCCGCCCCCCCCCGCGCCCTCGCTGCACCAGCTTCAAGCCAGTT
TCGCCGCGTTCACGCCGCGCTACCAGGCCGCCATGCACGATCCCAGCTCC
ATCAAGCCGCTGCTCATCCCCGCCGACGCGTACTTCACGCCGCGTTGCTC
CGTGTGCGCCGCCTCCTTCGCCACCATCCATCTGCTGGAGGCGCACGTGC
GCGCCATCCACCCGTCGTTCTACGCGTCTGCGCAGCACGCGTCGCAGCTG
GCCAACGCCGTGTCGCCCACCGCCTCCTCCTCTGCGCCGCACGACGCCTC
CTTCCTGCCGCCGTGGCTGCGTCCCGGCGACGCGCTGGCCTCCTGCGCGC
CGCCGCCCGTGCGCAATGGCGCTGCGCAACCGTTTTGCGAGCGCAGTGTG
GCGCACCCCACGCCGGTGGTGACCAAACCGGACACTTTGCAATATCGATG
CCAGCTTTGTAATGTGTCTTGTGACACCATGGCGCAGTTTACAAGTCACT
CTGCCGGTCAGAAACATCGCAAGAAGGCCGATCTGTTCAATGCGTTCAAA
CGCGTGGAGAAACGTTTCCCCGCCGAATGCATTCGATTCGAAGCGCCCTC
GCTGTGGCTTTGTTCGCTGTGTAACACTTGCATGCAGGCGCATAATGAGG
TGTTGCAGCACATGCAATGCGCAAAGCACAAGCGTTTGTTGAACGCTGCG
CAACTCAACCCCTCTGTGCGTCGCGCAGCGGCGCACAACCTGCCGGTGAC
CGCGATCAAACCGGCGTCCGTTTCGGCCGCCATGGCTGTGATGCAGTCTC
CCGTGAGCGAGTCGCTCACACCGTCGCGTGTTTCTCCGTCTCGTCAACAA
GATGCGCCCATGCAATTGGCGCCAACTTCGTGCGGTACACCGGTGCATGG
CGCGATCGTGAAGCCGCCCAAGAGTAACAAGACTGCCGCTTACGCGTGCG
CCGTGTGTAATGTGAGCTGCACCTCAAACGATAACCTCAACGTGCATCTG
GCCAGCGCACGCCACCGAAGGAAAGTGGAAGGCTCCGCGTTGATCCACAA
CATTGTGTGTAACGTTTGTCAGATCACGGTTTCCGGCGCCGCCAACTACG
AAGCACATCTCAAGGGAAAGACACACGCCAAGAAGCAACAGCAACGAGAG
GCTGCGCTACACAAGTCGGCATCGGCGCTGCTCAGCATGGCGCCCGCCGC
AAGCGATGTGAAGCTCAATGCACAAGCTGCCGAGGCGCAGCCTGTTCCAT
ATCGTTCCGGCGCACAAGGCGGCGATGCGCCGTCGTCCGTGGCGTTGCCC
GCGGGCACACGCATTGCCATGCCGTTGCGATCTGTGCCTTACCCTGCGCG
CCCCTCTGGTGAACAGTCGTAG

Coding sequence (CDS) from alignment at NODE_3769_length_2964_cov_3.277758:105..1526+

>Gcaud3604.t1 ID=Gcaud3604.t1|Name=Gcaud3604.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1422bp|location=Sequence derived from alignment at NODE_3769_length_2964_cov_3.277758:105..1526+ (Gracilaria caudata M_176_S67 male)
ATGTCGCACCCGTCCCCCGCCGACGCGGCCAACGTGAGCGGGCAGCCGCC
GCCGCCGCCGCCCCCCCCCGCGCCCTCGCTGCACCAGCTTCAAGCCAGTT
TCGCCGCGTTCACGCCGCGCTACCAGGCCGCCATGCACGATCCCAGCTCC
ATCAAGCCGCTGCTCATCCCCGCCGACGCGTACTTCACGCCGCGTTGCTC
CGTGTGCGCCGCCTCCTTCGCCACCATCCATCTGCTGGAGGCGCACGTGC
GCGCCATCCACCCGTCGTTCTACGCGTCTGCGCAGCACGCGTCGCAGCTG
GCCAACGCCGTGTCGCCCACCGCCTCCTCCTCTGCGCCGCACGACGCCTC
CTTCCTGCCGCCGTGGCTGCGTCCCGGCGACGCGCTGGCCTCCTGCGCGC
CGCCGCCCGTGCGCAATGGCGCTGCGCAACCGTTTTGCGAGCGCAGTGTG
GCGCACCCCACGCCGGTGGTGACCAAACCGGACACTTTGCAATATCGATG
CCAGCTTTGTAATGTGTCTTGTGACACCATGGCGCAGTTTACAAGTCACT
CTGCCGGTCAGAAACATCGCAAGAAGGCCGATCTGTTCAATGCGTTCAAA
CGCGTGGAGAAACGTTTCCCCGCCGAATGCATTCGATTCGAAGCGCCCTC
GCTGTGGCTTTGTTCGCTGTGTAACACTTGCATGCAGGCGCATAATGAGG
TGTTGCAGCACATGCAATGCGCAAAGCACAAGCGTTTGTTGAACGCTGCG
CAACTCAACCCCTCTGTGCGTCGCGCAGCGGCGCACAACCTGCCGGTGAC
CGCGATCAAACCGGCGTCCGTTTCGGCCGCCATGGCTGTGATGCAGTCTC
CCGTGAGCGAGTCGCTCACACCGTCGCGTGTTTCTCCGTCTCGTCAACAA
GATGCGCCCATGCAATTGGCGCCAACTTCGTGCGGTACACCGGTGCATGG
CGCGATCGTGAAGCCGCCCAAGAGTAACAAGACTGCCGCTTACGCGTGCG
CCGTGTGTAATGTGAGCTGCACCTCAAACGATAACCTCAACGTGCATCTG
GCCAGCGCACGCCACCGAAGGAAAGTGGAAGGCTCCGCGTTGATCCACAA
CATTGTGTGTAACGTTTGTCAGATCACGGTTTCCGGCGCCGCCAACTACG
AAGCACATCTCAAGGGAAAGACACACGCCAAGAAGCAACAGCAACGAGAG
GCTGCGCTACACAAGTCGGCATCGGCGCTGCTCAGCATGGCGCCCGCCGC
AAGCGATGTGAAGCTCAATGCACAAGCTGCCGAGGCGCAGCCTGTTCCAT
ATCGTTCCGGCGCACAAGGCGGCGATGCGCCGTCGTCCGTGGCGTTGCCC
GCGGGCACACGCATTGCCATGCCGTTGCGATCTGTGCCTTACCCTGCGCG
CCCCTCTGGTGAACAGTCGTAG