Gcaud3602.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3602.t1
Unique NameGcaud3602.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_872_length_16767_cov_4.844087contigNODE_872_length_16767_cov_4.844087:10445..13076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3602Gcaud3602Gracilaria caudata M_176_S67 malegeneNODE_872_length_16767_cov_4.844087 10445..13076 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3602.t1Gcaud3602.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_872_length_16767_cov_4.844087 10445..13076 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3602.t1.start1Gcaud3602.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_872_length_16767_cov_4.844087 10445..10447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3602.t1.CDS1Gcaud3602.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_872_length_16767_cov_4.844087 10445..10643 +
Gcaud3602.t1.CDS2Gcaud3602.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_872_length_16767_cov_4.844087 12619..13076 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3602.t1.exon1Gcaud3602.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_872_length_16767_cov_4.844087 10445..10643 +
Gcaud3602.t1.exon2Gcaud3602.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_872_length_16767_cov_4.844087 12619..13076 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3602.t1.intron1Gcaud3602.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_872_length_16767_cov_4.844087 10644..12618 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3602.t1.stop1Gcaud3602.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_872_length_16767_cov_4.844087 13074..13076 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3602.t1 ID=Gcaud3602.t1|Name=Gcaud3602.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=219bp
MPTPVGDTTDGGDGGDGTGIGGITTIGEGATIIGGTAPGSGVATVGEGGT
TSFLGALLGIGIGGDGDHSGSSTAKGSFRTEPRNPMKFTFLFLASFLAIV
STTPTVRQDDLTSTIISLLPTPVPIVATALAPILTVMSLAPSPISTPEVT
PVPPAAAPAADGVIASAPAADDEGLTSTEATVVTTGGDISGIDGPASISG
TFSSTTVEGPGVFIGPPA*
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spliced messenger RNA

>Gcaud3602.t1 ID=Gcaud3602.t1|Name=Gcaud3602.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=657bp|location=Sequence derived from alignment at NODE_872_length_16767_cov_4.844087:10445..13076+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAACCCCGGTTGGAGACACTACCGATGGTGGTGATGGTGGTGACGG
TACGGGTATTGGAGGAATTACTACCATTGGTGAGGGAGCTACAATTATCG
GAGGCACCGCCCCTGGTTCTGGCGTCGCGACGGTTGGTGAGGGTGGTACT
ACCTCATTCCTCGGAGCGCTGCTTGGCATTGGTATTGGAGGAGACGGTGA
TCATAGTGGATCCTCTACAGCCAAGGGTAGCTTCCGAACTGAACCACGGA
ACCCGATGAAGTTCACTTTCCTCTTCCTTGCTTCTTTTCTTGCCATTGTG
TCTACCACTCCGACAGTTCGACAAGATGATCTTACATCCACAATCATTTC
CCTTCTTCCCACACCTGTGCCAATCGTCGCAACCGCGCTGGCACCAATTT
TGACAGTGATGTCGCTTGCCCCTTCACCGATCAGCACTCCAGAAGTCACG
CCTGTTCCTCCTGCCGCTGCGCCCGCAGCAGACGGAGTTATCGCAAGTGC
TCCCGCTGCTGATGATGAAGGTCTCACGTCCACCGAAGCTACTGTTGTAA
CCACTGGAGGTGACATTTCTGGCATTGACGGACCGGCTTCGATTTCTGGT
ACTTTCTCCTCCACCACGGTCGAAGGACCTGGTGTATTTATCGGACCGCC
GGCATAA
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protein sequence of Gcaud3602.t1

>Gcaud3602.t1 ID=Gcaud3602.t1|Name=Gcaud3602.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=219bp
MPTPVGDTTDGGDGGDGTGIGGITTIGEGATIIGGTAPGSGVATVGEGGT
TSFLGALLGIGIGGDGDHSGSSTAKGSFRTEPRNPMKFTFLFLASFLAIV
STTPTVRQDDLTSTIISLLPTPVPIVATALAPILTVMSLAPSPISTPEVT
PVPPAAAPAADGVIASAPAADDEGLTSTEATVVTTGGDISGIDGPASISG
TFSSTTVEGPGVFIGPPA*
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mRNA from alignment at NODE_872_length_16767_cov_4.844087:10445..13076+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3602.t1 ID=Gcaud3602.t1|Name=Gcaud3602.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2632bp|location=Sequence derived from alignment at NODE_872_length_16767_cov_4.844087:10445..13076+ (Gracilaria caudata M_176_S67 male)
ATGCCAACCCCGGTTGGAGACACTACCGATGGTGGTGATGGTGGTGACGG
TACGGGTATTGGAGGAATTACTACCATTGGTGAGGGAGCTACAATTATCG
GAGGCACCGCCCCTGGTTCTGGCGTCGCGACGGTTGGTGAGGGTGGTACT
ACCTCATTCCTCGGAGCGCTGCTTGGCATTGGTATTGGAGGAGACGGTGG
TCGATAATTTTCTTTGAGCGTTTTGGCTCCAATCATGCATACTGTTCGAC
AAACGTCATTCTTGACCAACGTCACTTTTGAATGTTACTTAATATGAACA
TGAGCAAATAAATCATATCCAATCGCGTTTGAGTTGCGTGTTTCAGTCTC
TACACATGAAAAGGAACGAAAATGATGATTGCATCTATCGGTGAGAAAGG
AAAACGAAGAGCTCCCGTGAGGTACAAGTTATGTACATAGAATGAAGAGT
ATGTACTAACTCTAGTCATCTCTCCTTTGTACATACTTGTTCCTGATCGT
ACGCATCATTTCCTTCCTTCCCTTTGAAAACATGGTCTACAACCCTACCC
TCCAGGAATTTAGCGCTGTACTGCTATTCCATTCGAATGCTATTACAAAG
GAACACTGCCGCACACTTCACGGTCTTTCTCCGCTGTGACATCTTGTGCG
GTACAACAGCATTTCTCGAGAACAAAGGTGTAAGTTCAAAGGGTTCAACA
CCTCTTCTTTCTCCGCAGGTAATACGATTCGAGGGTGAGTATTCTTTTTA
AACTGGCTGTGACACATGCTACTCGAGATGGCAATGTACTCTGTACTATA
TAAACCCATTTCGGGTCCGTGTAGCGATTAAAAAGCCAACTTCTCGAAGT
GGGCAGAAGGACCCAGTTACGTGTGTGGTCCCACGGGGACGTGGGATTTC
TAAACGGATTTGTGGTTTCTGAAAACATTTCCAAAGCGCGAATCACATTC
GTGAAGTGACTGAAGAATATCTAGTGCCTTTTGAACCAAGAAATTAAGCT
CATCTTTTTCACACGCGCGAGTCCTCACACGTGGAAAATAAGGCTTTTCT
GCGGACGTTGACTCGAGGAGCATCGCCGATGATGTGGCCTACAATTGTTG
CGGTCACTGGATGTAGATATGTGAGGCAGACAGTAATGTATTAGTGACAA
CCAGGTTTTGGTCTCCCACAGCAATGTCTCTCTCGCAGTTTGAGGGGTGA
GCCATGGGTGGTTAGGCGATGCAGGTGTGAAAATTTAGGAAGTTTGGAGC
TGGAGCATCTATATTTCAAGTGCTGCTTCTTTTCTAAAGCTGTTATATTG
TAGTGCGTCAGATCATTACTTGATGCGCGGCGGCAGTTTAAATGATCTCC
TCCAGTTCAGGCTGATTGAGTTAAGAAGAAAGTGTCGGATTGCGAAGATA
TATATATCAGCAGACAAAGCGTCGAAAATGACAGCTGAAGGAGACTATCG
AAAGAAGACCAAGATTCGATCAAGTCAAAGAAAGGGAACGAAATAGACAC
GGCAGTCACGACCAAACATTCTTCAATGGACAAATATAGACGGTGCAACA
GAATTGTAACAGATCGAAGATAATAGATAGCAATAGTGGCGGCAGATATT
AAGTCGGTCACGGAAGAAAACTTTTCCCGCTTCTATGTGTGAATGACAAC
GATGGCTCTCTTGAGAGGCAGTGTGATTGAATTGAAGCTTGCAAATCCTT
GTACATCTAAAAATAGATCGAGAAAGATCAATGCCACGTTGCGCAGGCGC
TTACATCTAAAGCCATCTTCCTGTTCCTGCAAATTCAGTAAGTTGCCTAG
CTAGTGCTTAGGGCCCATGCAACTAAGAGCCCTTGAATAGCCCTCGCGTG
CCAAGAATCAACCTTCACGATTGTTAATGGCCGATCTAGATCGAGGAACC
CTTCAAAAGATTAAACCTTCGCAGGTACGACATCTTGCCCTAACTACGAA
AAGAATTTTCTATTCATGGCAGGGAACGAGCTGCATAATAGTTCGAGAGT
CAACTACACACGTATGCCTCACCAAAAGAGAATTTTGAGATTCCTCGAAA
AAGATACTCGAGCCTTTCGCGATGAAATTGAGGCATGCTCATACTTCACT
GTTTCTCCACTATAAAAGGGTTTCGAAATGTGGTCTTGTGTAGAATACAA
CGTTCTAAACGCTCTTCGAAGCAGATCATAGTGGATCCTCTACAGCCAAG
GGTAGCTTCCGAACTGAACCACGGAACCCGATGAAGTTCACTTTCCTCTT
CCTTGCTTCTTTTCTTGCCATTGTGTCTACCACTCCGACAGTTCGACAAG
ATGATCTTACATCCACAATCATTTCCCTTCTTCCCACACCTGTGCCAATC
GTCGCAACCGCGCTGGCACCAATTTTGACAGTGATGTCGCTTGCCCCTTC
ACCGATCAGCACTCCAGAAGTCACGCCTGTTCCTCCTGCCGCTGCGCCCG
CAGCAGACGGAGTTATCGCAAGTGCTCCCGCTGCTGATGATGAAGGTCTC
ACGTCCACCGAAGCTACTGTTGTAACCACTGGAGGTGACATTTCTGGCAT
TGACGGACCGGCTTCGATTTCTGGTACTTTCTCCTCCACCACGGTCGAAG
GACCTGGTGTATTTATCGGACCGCCGGCATAA
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Coding sequence (CDS) from alignment at NODE_872_length_16767_cov_4.844087:10445..13076+

>Gcaud3602.t1 ID=Gcaud3602.t1|Name=Gcaud3602.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=657bp|location=Sequence derived from alignment at NODE_872_length_16767_cov_4.844087:10445..13076+ (Gracilaria caudata M_176_S67 male)
ATGCCAACCCCGGTTGGAGACACTACCGATGGTGGTGATGGTGGTGACGG
TACGGGTATTGGAGGAATTACTACCATTGGTGAGGGAGCTACAATTATCG
GAGGCACCGCCCCTGGTTCTGGCGTCGCGACGGTTGGTGAGGGTGGTACT
ACCTCATTCCTCGGAGCGCTGCTTGGCATTGGTATTGGAGGAGACGGTGA
TCATAGTGGATCCTCTACAGCCAAGGGTAGCTTCCGAACTGAACCACGGA
ACCCGATGAAGTTCACTTTCCTCTTCCTTGCTTCTTTTCTTGCCATTGTG
TCTACCACTCCGACAGTTCGACAAGATGATCTTACATCCACAATCATTTC
CCTTCTTCCCACACCTGTGCCAATCGTCGCAACCGCGCTGGCACCAATTT
TGACAGTGATGTCGCTTGCCCCTTCACCGATCAGCACTCCAGAAGTCACG
CCTGTTCCTCCTGCCGCTGCGCCCGCAGCAGACGGAGTTATCGCAAGTGC
TCCCGCTGCTGATGATGAAGGTCTCACGTCCACCGAAGCTACTGTTGTAA
CCACTGGAGGTGACATTTCTGGCATTGACGGACCGGCTTCGATTTCTGGT
ACTTTCTCCTCCACCACGGTCGAAGGACCTGGTGTATTTATCGGACCGCC
GGCATAA
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