Gcaud3594.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3594.t1
Unique NameGcaud3594.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length250
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2144_length_6665_cov_139.757378contigNODE_2144_length_6665_cov_139.757378:702..1451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704987.1
Preferred namethiG
PFAMsThiG
Max annot lvl2759|Eukaryota
KEGG rclassRC03096,RC03097,RC03461
KEGG koko:K03149
KEGG ReactionR10247
KEGG Pathwayko00730,ko01100,map00730,map01100
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue1.17e-107
EggNOG OGsCOG2022@1|root,2RCR5@2759|Eukaryota
EC2.8.1.10
Descriptionthiamine diphosphate biosynthetic process
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3594Gcaud3594Gracilaria caudata M_176_S67 malegeneNODE_2144_length_6665_cov_139.757378 702..1451 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3594.t1.stop1Gcaud3594.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2144_length_6665_cov_139.757378 702..704 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3594.t1.CDS1Gcaud3594.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2144_length_6665_cov_139.757378 702..1451 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3594.t1.exon1Gcaud3594.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2144_length_6665_cov_139.757378 702..1451 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3594.t1.start1Gcaud3594.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2144_length_6665_cov_139.757378 1449..1451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3594.t1Gcaud3594.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2144_length_6665_cov_139.757378 702..1451 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3594.t1 ID=Gcaud3594.t1|Name=Gcaud3594.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=250bp
MLGTGKYQNLKEASVSIINSDASIVTVAIRRAYSKKLRGKSNLLDGLNWK
KLWLLPNTAGCETVDEAIRMAVLGREMAKKLGQLDNNFVKLEVISDSEYL
FPDPYGTLKAAEYLVKKKFTVLPYISPDPILAKQLEEVGCSAIMPLGSPI
GSGQGLQNLFNLQVIINNAQVPIIIDAGIGTASEASQAMEMGASAVLLNT
AVAKAAKPQYMAEAMKLGVISGRISYLSGRMSKQDKAIASSPPEGIFIK*
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spliced messenger RNA

>Gcaud3594.t1 ID=Gcaud3594.t1|Name=Gcaud3594.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=750bp|location=Sequence derived from alignment at NODE_2144_length_6665_cov_139.757378:702..1451- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAGGTACAGGCAAATATCAGAATTTAAAAGAGGCTAGTGTTAGTAT
AATTAATAGTGATGCTTCTATTGTTACAGTAGCTATTCGTCGTGCATATA
GTAAAAAGTTAAGAGGTAAAAGTAACTTATTAGATGGATTAAATTGGAAA
AAATTATGGCTTTTACCCAATACGGCTGGTTGTGAAACGGTAGATGAAGC
TATAAGGATGGCTGTTTTAGGGCGCGAAATGGCTAAAAAATTGGGTCAGT
TAGATAATAATTTTGTTAAGTTAGAAGTTATTTCTGATTCAGAATATTTA
TTTCCAGATCCTTACGGTACTTTAAAAGCTGCAGAATATCTGGTAAAGAA
AAAATTTACCGTATTACCTTATATAAGTCCAGACCCTATTTTAGCTAAAC
AGCTAGAAGAAGTTGGATGTTCTGCAATTATGCCTTTAGGTTCTCCTATT
GGTTCTGGACAAGGTTTGCAAAATCTTTTCAATTTGCAAGTTATTATAAA
TAATGCACAAGTACCTATTATAATAGATGCAGGTATTGGAACAGCTAGTG
AGGCTAGTCAAGCCATGGAAATGGGAGCATCTGCAGTATTATTAAATACA
GCTGTTGCTAAAGCTGCTAAACCTCAATACATGGCTGAAGCTATGAAATT
AGGAGTTATATCTGGTCGTATTTCTTATTTATCCGGTAGAATGTCAAAAC
AAGATAAAGCTATAGCAAGTTCACCTCCCGAAGGTATATTTATAAAGTAA
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protein sequence of Gcaud3594.t1

>Gcaud3594.t1 ID=Gcaud3594.t1|Name=Gcaud3594.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=250bp
MLGTGKYQNLKEASVSIINSDASIVTVAIRRAYSKKLRGKSNLLDGLNWK
KLWLLPNTAGCETVDEAIRMAVLGREMAKKLGQLDNNFVKLEVISDSEYL
FPDPYGTLKAAEYLVKKKFTVLPYISPDPILAKQLEEVGCSAIMPLGSPI
GSGQGLQNLFNLQVIINNAQVPIIIDAGIGTASEASQAMEMGASAVLLNT
AVAKAAKPQYMAEAMKLGVISGRISYLSGRMSKQDKAIASSPPEGIFIK*
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mRNA from alignment at NODE_2144_length_6665_cov_139.757378:702..1451-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3594.t1 ID=Gcaud3594.t1|Name=Gcaud3594.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=750bp|location=Sequence derived from alignment at NODE_2144_length_6665_cov_139.757378:702..1451- (Gracilaria caudata M_176_S67 male)
ATGTTAGGTACAGGCAAATATCAGAATTTAAAAGAGGCTAGTGTTAGTAT
AATTAATAGTGATGCTTCTATTGTTACAGTAGCTATTCGTCGTGCATATA
GTAAAAAGTTAAGAGGTAAAAGTAACTTATTAGATGGATTAAATTGGAAA
AAATTATGGCTTTTACCCAATACGGCTGGTTGTGAAACGGTAGATGAAGC
TATAAGGATGGCTGTTTTAGGGCGCGAAATGGCTAAAAAATTGGGTCAGT
TAGATAATAATTTTGTTAAGTTAGAAGTTATTTCTGATTCAGAATATTTA
TTTCCAGATCCTTACGGTACTTTAAAAGCTGCAGAATATCTGGTAAAGAA
AAAATTTACCGTATTACCTTATATAAGTCCAGACCCTATTTTAGCTAAAC
AGCTAGAAGAAGTTGGATGTTCTGCAATTATGCCTTTAGGTTCTCCTATT
GGTTCTGGACAAGGTTTGCAAAATCTTTTCAATTTGCAAGTTATTATAAA
TAATGCACAAGTACCTATTATAATAGATGCAGGTATTGGAACAGCTAGTG
AGGCTAGTCAAGCCATGGAAATGGGAGCATCTGCAGTATTATTAAATACA
GCTGTTGCTAAAGCTGCTAAACCTCAATACATGGCTGAAGCTATGAAATT
AGGAGTTATATCTGGTCGTATTTCTTATTTATCCGGTAGAATGTCAAAAC
AAGATAAAGCTATAGCAAGTTCACCTCCCGAAGGTATATTTATAAAGTAA
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Coding sequence (CDS) from alignment at NODE_2144_length_6665_cov_139.757378:702..1451-

>Gcaud3594.t1 ID=Gcaud3594.t1|Name=Gcaud3594.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=750bp|location=Sequence derived from alignment at NODE_2144_length_6665_cov_139.757378:702..1451- (Gracilaria caudata M_176_S67 male)
ATGTTAGGTACAGGCAAATATCAGAATTTAAAAGAGGCTAGTGTTAGTAT
AATTAATAGTGATGCTTCTATTGTTACAGTAGCTATTCGTCGTGCATATA
GTAAAAAGTTAAGAGGTAAAAGTAACTTATTAGATGGATTAAATTGGAAA
AAATTATGGCTTTTACCCAATACGGCTGGTTGTGAAACGGTAGATGAAGC
TATAAGGATGGCTGTTTTAGGGCGCGAAATGGCTAAAAAATTGGGTCAGT
TAGATAATAATTTTGTTAAGTTAGAAGTTATTTCTGATTCAGAATATTTA
TTTCCAGATCCTTACGGTACTTTAAAAGCTGCAGAATATCTGGTAAAGAA
AAAATTTACCGTATTACCTTATATAAGTCCAGACCCTATTTTAGCTAAAC
AGCTAGAAGAAGTTGGATGTTCTGCAATTATGCCTTTAGGTTCTCCTATT
GGTTCTGGACAAGGTTTGCAAAATCTTTTCAATTTGCAAGTTATTATAAA
TAATGCACAAGTACCTATTATAATAGATGCAGGTATTGGAACAGCTAGTG
AGGCTAGTCAAGCCATGGAAATGGGAGCATCTGCAGTATTATTAAATACA
GCTGTTGCTAAAGCTGCTAAACCTCAATACATGGCTGAAGCTATGAAATT
AGGAGTTATATCTGGTCGTATTTCTTATTTATCCGGTAGAATGTCAAAAC
AAGATAAAGCTATAGCAAGTTCACCTCCCGAAGGTATATTTATAAAGTAA
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