Gcaud358.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud358.t1
Unique Name	Gcaud358.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	243

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2018_length_7188_cov_4.724109	contig	NODE_2018_length_7188_cov_4.724109:6462..7188 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1172181.KB911734_gene6653
PFAMs	Pkinase
Max annot lvl	201174\|Actinobacteria
Evalue	0.000554
EggNOG OGs	COG0515@1\|root,COG0515@2\|Bacteria,2HNRK@201174\|Actinobacteria
Description	Protein tyrosine kinase
COG category	KLT

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud358	Gcaud358	Gracilaria caudata M_176_S67 male	gene	NODE_2018_length_7188_cov_4.724109 6462..7188 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud358.t1.start1	Gcaud358.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2018_length_7188_cov_4.724109 6462..6464 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud358.t1.CDS1	Gcaud358.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2018_length_7188_cov_4.724109 6462..7188 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud358.t1.exon1	Gcaud358.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2018_length_7188_cov_4.724109 6462..7188 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud358.t1	Gcaud358.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2018_length_7188_cov_4.724109 6462..7188 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2018_length_7188_cov_4.724109:6462..7188+
coding sequence from alignment at NODE_2018_length_7188_cov_4.724109:6462..7188+

mRNA sequence

>Gcaud358.t1 ID=Gcaud358.t1|Name=Gcaud358.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=243bp
MTAKLSKGEVVMDQYRIEKMVDEDDVVISFLAWDFVQQRNVLLSIGRELG
FLERHAQRYKELENVLPNFYKAPFAKLLQTGTFSNRHVRVSQYHGPLLAE
RMRKEGKLSREEALSITLTLLDILKQLHSCSGSLQGLMDASMVMLNEYSN
NDSKALPVAIMTELTELRFEHHDGFLHYRRDLEALVKLFFEMWVEDVEMA
DWCELYELEDIVPSEYAPLFTFFDRLEKEHSPWGSEMYATTAX

spliced messenger RNA

>Gcaud358.t1 ID=Gcaud358.t1|Name=Gcaud358.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=727bp|location=Sequence derived from alignment at NODE_2018_length_7188_cov_4.724109:6462..7188+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCAAAATTGAGCAAAGGCGAAGTAGTGATGGATCAATACCGCAT
TGAGAAAATGGTCGACGAAGATGATGTCGTTATTAGCTTTCTTGCGTGGG
ACTTTGTGCAGCAAAGAAACGTCTTGTTGAGCATTGGCCGTGAACTAGGA
TTTCTCGAACGCCACGCTCAACGCTATAAAGAGTTGGAGAACGTGCTTCC
GAATTTTTACAAGGCTCCATTTGCAAAGCTTCTGCAAACTGGTACCTTCA
GCAATCGACATGTGCGGGTGAGCCAATATCATGGGCCTCTCCTTGCTGAA
CGAATGCGCAAAGAAGGCAAATTGTCTAGGGAAGAGGCTTTGTCGATAAC
CCTCACCCTGCTTGACATTCTTAAACAGCTCCACTCTTGTTCGGGTTCTC
TTCAAGGACTAATGGACGCTTCGATGGTAATGTTAAACGAATATTCCAAC
AACGACTCTAAAGCGTTGCCCGTTGCGATAATGACCGAACTTACGGAGTT
GAGGTTCGAACACCATGATGGTTTCTTGCATTACAGACGCGATTTGGAAG
CGCTTGTCAAATTGTTCTTTGAGATGTGGGTTGAAGATGTTGAGATGGCA
GACTGGTGCGAATTGTATGAGCTGGAGGACATTGTGCCATCTGAGTATGC
GCCTTTGTTCACGTTCTTCGATCGCCTTGAAAAGGAGCACAGTCCTTGGG
GATCAGAAATGTACGCCACAACCGCAG

protein sequence of Gcaud358.t1

>Gcaud358.t1 ID=Gcaud358.t1|Name=Gcaud358.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=243bp
MTAKLSKGEVVMDQYRIEKMVDEDDVVISFLAWDFVQQRNVLLSIGRELG
FLERHAQRYKELENVLPNFYKAPFAKLLQTGTFSNRHVRVSQYHGPLLAE
RMRKEGKLSREEALSITLTLLDILKQLHSCSGSLQGLMDASMVMLNEYSN
NDSKALPVAIMTELTELRFEHHDGFLHYRRDLEALVKLFFEMWVEDVEMA
DWCELYELEDIVPSEYAPLFTFFDRLEKEHSPWGSEMYATTAX

mRNA from alignment at NODE_2018_length_7188_cov_4.724109:6462..7188+

Legend: start_codonpolypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud358.t1 ID=Gcaud358.t1|Name=Gcaud358.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=727bp|location=Sequence derived from alignment at NODE_2018_length_7188_cov_4.724109:6462..7188+ (Gracilaria caudata M_176_S67 male)
ATGACCGCAAAATTGAGCAAAGGCGAAGTAGTGATGGATCAATACCGCAT
TGAGAAAATGGTCGACGAAGATGATGTCGTTATTAGCTTTCTTGCGTGGG
ACTTTGTGCAGCAAAGAAACGTCTTGTTGAGCATTGGCCGTGAACTAGGA
TTTCTCGAACGCCACGCTCAACGCTATAAAGAGTTGGAGAACGTGCTTCC
GAATTTTTACAAGGCTCCATTTGCAAAGCTTCTGCAAACTGGTACCTTCA
GCAATCGACATGTGCGGGTGAGCCAATATCATGGGCCTCTCCTTGCTGAA
CGAATGCGCAAAGAAGGCAAATTGTCTAGGGAAGAGGCTTTGTCGATAAC
CCTCACCCTGCTTGACATTCTTAAACAGCTCCACTCTTGTTCGGGTTCTC
TTCAAGGACTAATGGACGCTTCGATGGTAATGTTAAACGAATATTCCAAC
AACGACTCTAAAGCGTTGCCCGTTGCGATAATGACCGAACTTACGGAGTT
GAGGTTCGAACACCATGATGGTTTCTTGCATTACAGACGCGATTTGGAAG
CGCTTGTCAAATTGTTCTTTGAGATGTGGGTTGAAGATGTTGAGATGGCA
GACTGGTGCGAATTGTATGAGCTGGAGGACATTGTGCCATCTGAGTATGC
GCCTTTGTTCACGTTCTTCGATCGCCTTGAAAAGGAGCACAGTCCTTGGG
GATCAGAAATGTACGCCACAACCGCAG

Coding sequence (CDS) from alignment at NODE_2018_length_7188_cov_4.724109:6462..7188+

>Gcaud358.t1 ID=Gcaud358.t1|Name=Gcaud358.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=727bp|location=Sequence derived from alignment at NODE_2018_length_7188_cov_4.724109:6462..7188+ (Gracilaria caudata M_176_S67 male)
ATGACCGCAAAATTGAGCAAAGGCGAAGTAGTGATGGATCAATACCGCAT
TGAGAAAATGGTCGACGAAGATGATGTCGTTATTAGCTTTCTTGCGTGGG
ACTTTGTGCAGCAAAGAAACGTCTTGTTGAGCATTGGCCGTGAACTAGGA
TTTCTCGAACGCCACGCTCAACGCTATAAAGAGTTGGAGAACGTGCTTCC
GAATTTTTACAAGGCTCCATTTGCAAAGCTTCTGCAAACTGGTACCTTCA
GCAATCGACATGTGCGGGTGAGCCAATATCATGGGCCTCTCCTTGCTGAA
CGAATGCGCAAAGAAGGCAAATTGTCTAGGGAAGAGGCTTTGTCGATAAC
CCTCACCCTGCTTGACATTCTTAAACAGCTCCACTCTTGTTCGGGTTCTC
TTCAAGGACTAATGGACGCTTCGATGGTAATGTTAAACGAATATTCCAAC
AACGACTCTAAAGCGTTGCCCGTTGCGATAATGACCGAACTTACGGAGTT
GAGGTTCGAACACCATGATGGTTTCTTGCATTACAGACGCGATTTGGAAG
CGCTTGTCAAATTGTTCTTTGAGATGTGGGTTGAAGATGTTGAGATGGCA
GACTGGTGCGAATTGTATGAGCTGGAGGACATTGTGCCATCTGAGTATGC
GCCTTTGTTCACGTTCTTCGATCGCCTTGAAAAGGAGCACAGTCCTTGGG
GATCAGAAATGTACGCCACAACCGCAG