Gcaud3563.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3563.t1
Unique Name	Gcaud3563.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	506

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_9_length_88726_cov_4.624437	contig	NODE_9_length_88726_cov_4.624437:29658..31244 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	41431.PCC8801_2338
Preferred name	cad
PFAMs	OKR_DC_1,OKR_DC_1_C
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00299
KEGG ko	ko:K01582
KEGG Reaction	R00462
KEGG Pathway	ko00310,ko00960,ko01100,ko01110,map00310,map00960,map01100,map01110
Evalue	1.53e-123
EggNOG OGs	COG1982@1\|root,COG1982@2\|Bacteria,1G1TA@1117\|Cyanobacteria,3KH97@43988\|Cyanothece
EC	4.1.1.18
Description	Orn Lys Arg decarboxylase major region
COG category	E
BiGG Reaction	iJN678.cad
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3563	Gcaud3563	Gracilaria caudata M_176_S67 male	gene	NODE_9_length_88726_cov_4.624437 29658..31244 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3563.t1	Gcaud3563.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_9_length_88726_cov_4.624437 29658..31244 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3563.t1.stop1	Gcaud3563.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_9_length_88726_cov_4.624437 29658..29660 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3563.t1.CDS1	Gcaud3563.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_9_length_88726_cov_4.624437 29658..30250 -
Gcaud3563.t1.CDS2	Gcaud3563.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_9_length_88726_cov_4.624437 30320..31244 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3563.t1.exon1	Gcaud3563.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_9_length_88726_cov_4.624437 29658..30250 -
Gcaud3563.t1.exon2	Gcaud3563.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_9_length_88726_cov_4.624437 30320..31244 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3563.t1.intron1	Gcaud3563.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_9_length_88726_cov_4.624437 30251..30319 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3563.t1.start1	Gcaud3563.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_9_length_88726_cov_4.624437 31242..31244 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_9_length_88726_cov_4.624437:29658..31244-
coding sequence from alignment at NODE_9_length_88726_cov_4.624437:29658..31244-

mRNA sequence

>Gcaud3563.t1 ID=Gcaud3563.t1|Name=Gcaud3563.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=506bp
LAAQELARPFTPFRACAPSEIGVEAVSSRKVNNVDTPLISSIHQESKRVR
ANLFCPGHKQGKRLHSSFRKLTQANVLEVDLPELPALDNLFTPGGVIKDA
QRKAADVFTKDGSLVWQTHFLVNGTTCGIEAAILACSRPGRKVILPRNAH
QSAIHALVLSGAVPVWVAPRYDSQYDLVHTVKAEDIAAVPEQHNGEVDAV
LLVSPTYHGVCPDIEAVARIIHEFGVRLIVDEAHGSHLTFHSRLPKSGTD
VHADIVIQSAHKTLAAKSQAAMMHVRRSSVDIHRICAALQLVQSTSPNYL
LLASLDGALRIASIEGFDVLGMNDTGVGKTNSFVYDLDPTRVTVLLPAGI
QGYDVDEYLIAQHGVYAELPSFRHLTFVFSPETTQSDVDVLVTALSLYDT
TIQSNSASGPIPKMTWTRNDALGETTGVTPRHAFFADSTALCAQEAIGRI
SVETLCPYPPGIPMIIAGERVTHESLDMLQAVLKAGGSISGASDETLSTI
RVVAE*

spliced messenger RNA

>Gcaud3563.t1 ID=Gcaud3563.t1|Name=Gcaud3563.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at NODE_9_length_88726_cov_4.624437:29658..31244- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGCAGCCCAAGAGCTCGCTCGTCCTTTCACCCCTTTTCGAGCGTGTGC
CCCAAGCGAAATTGGTGTCGAGGCTGTTAGCTCTCGCAAGGTTAATAATG
TAGATACCCCACTTATCTCATCTATTCATCAAGAATCGAAACGTGTGCGA
GCAAATTTGTTCTGTCCCGGACACAAACAGGGAAAGCGTTTGCATTCATC
TTTTCGCAAGTTGACACAAGCGAATGTTCTTGAAGTTGACCTTCCAGAAC
TGCCCGCACTAGATAATCTCTTCACTCCAGGTGGCGTCATTAAAGATGCC
CAAAGGAAGGCAGCAGATGTTTTCACAAAGGATGGATCGCTAGTATGGCA
AACTCATTTCCTGGTGAATGGCACTACATGCGGTATAGAAGCAGCAATTC
TCGCGTGTTCAAGGCCTGGACGAAAGGTAATCTTACCTCGAAATGCTCAC
CAGTCTGCGATACATGCTTTGGTCTTATCTGGTGCAGTTCCTGTTTGGGT
AGCTCCTCGTTATGATTCGCAATATGATCTCGTGCATACCGTTAAGGCAG
AGGATATAGCAGCGGTACCTGAGCAGCACAATGGAGAAGTAGATGCAGTG
CTATTGGTATCACCTACGTACCATGGCGTGTGTCCCGACATTGAGGCAGT
GGCAAGGATCATCCATGAATTTGGAGTTAGACTAATTGTAGATGAAGCTC
ATGGATCTCACCTAACTTTTCATTCTCGCTTGCCAAAGTCTGGAACGGAT
GTGCATGCTGATATTGTCATCCAGAGCGCTCACAAGACTTTGGCCGCAAA
GTCACAGGCGGCCATGATGCATGTTCGAAGATCATCTGTAGACATACATA
GAATCTGTGCGGCGCTACAACTGGTTCAGAGCACAAGCCCCAACTACTTG
CTGCTTGCATCTTTAGATGGTGCTCTGCGAATTGCCAGTATCGAAGGATT
CGACGTACTAGGCATGAACGATACGGGAGTTGGGAAAACCAACTCTTTTG
TTTATGATTTGGACCCTACTAGAGTTACAGTGCTATTACCGGCAGGAATA
CAAGGCTACGACGTTGACGAATATTTGATTGCTCAGCATGGTGTCTATGC
TGAGCTTCCATCATTTCGTCACTTAACATTCGTATTCTCTCCCGAGACTA
CCCAAAGTGACGTTGATGTATTGGTAACAGCACTATCATTGTATGACACC
ACCATACAAAGTAACAGTGCATCCGGGCCAATACCCAAAATGACGTGGAC
GAGAAATGATGCGTTAGGTGAAACAACTGGGGTAACTCCGCGCCATGCCT
TCTTTGCTGATAGTACTGCACTGTGCGCGCAAGAAGCCATCGGTCGCATC
AGTGTTGAGACCCTTTGTCCATATCCTCCAGGAATACCCATGATCATCGC
CGGTGAGCGAGTGACTCATGAAAGTCTTGATATGTTGCAAGCGGTTCTAA
AGGCGGGGGGCAGCATATCTGGAGCAAGTGATGAAACGCTTTCAACAATT
CGTGTTGTCGCCGAATGA

protein sequence of Gcaud3563.t1

>Gcaud3563.t1 ID=Gcaud3563.t1|Name=Gcaud3563.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=506bp
LAAQELARPFTPFRACAPSEIGVEAVSSRKVNNVDTPLISSIHQESKRVR
ANLFCPGHKQGKRLHSSFRKLTQANVLEVDLPELPALDNLFTPGGVIKDA
QRKAADVFTKDGSLVWQTHFLVNGTTCGIEAAILACSRPGRKVILPRNAH
QSAIHALVLSGAVPVWVAPRYDSQYDLVHTVKAEDIAAVPEQHNGEVDAV
LLVSPTYHGVCPDIEAVARIIHEFGVRLIVDEAHGSHLTFHSRLPKSGTD
VHADIVIQSAHKTLAAKSQAAMMHVRRSSVDIHRICAALQLVQSTSPNYL
LLASLDGALRIASIEGFDVLGMNDTGVGKTNSFVYDLDPTRVTVLLPAGI
QGYDVDEYLIAQHGVYAELPSFRHLTFVFSPETTQSDVDVLVTALSLYDT
TIQSNSASGPIPKMTWTRNDALGETTGVTPRHAFFADSTALCAQEAIGRI
SVETLCPYPPGIPMIIAGERVTHESLDMLQAVLKAGGSISGASDETLSTI
RVVAE*

mRNA from alignment at NODE_9_length_88726_cov_4.624437:29658..31244-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3563.t1 ID=Gcaud3563.t1|Name=Gcaud3563.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1587bp|location=Sequence derived from alignment at NODE_9_length_88726_cov_4.624437:29658..31244- (Gracilaria caudata M_176_S67 male)
TTGGCAGCCCAAGAGCTCGCTCGTCCTTTCACCCCTTTTCGAGCGTGTGC
CCCAAGCGAAATTGGTGTCGAGGCTGTTAGCTCTCGCAAGGTTAATAATG
TAGATACCCCACTTATCTCATCTATTCATCAAGAATCGAAACGTGTGCGA
GCAAATTTGTTCTGTCCCGGACACAAACAGGGAAAGCGTTTGCATTCATC
TTTTCGCAAGTTGACACAAGCGAATGTTCTTGAAGTTGACCTTCCAGAAC
TGCCCGCACTAGATAATCTCTTCACTCCAGGTGGCGTCATTAAAGATGCC
CAAAGGAAGGCAGCAGATGTTTTCACAAAGGATGGATCGCTAGTATGGCA
AACTCATTTCCTGGTGAATGGCACTACATGCGGTATAGAAGCAGCAATTC
TCGCGTGTTCAAGGCCTGGACGAAAGGTAATCTTACCTCGAAATGCTCAC
CAGTCTGCGATACATGCTTTGGTCTTATCTGGTGCAGTTCCTGTTTGGGT
AGCTCCTCGTTATGATTCGCAATATGATCTCGTGCATACCGTTAAGGCAG
AGGATATAGCAGCGGTACCTGAGCAGCACAATGGAGAAGTAGATGCAGTG
CTATTGGTATCACCTACGTACCATGGCGTGTGTCCCGACATTGAGGCAGT
GGCAAGGATCATCCATGAATTTGGAGTTAGACTAATTGTAGATGAAGCTC
ATGGATCTCACCTAACTTTTCATTCTCGCTTGCCAAAGTCTGGAACGGAT
GTGCATGCTGATATTGTCATCCAGAGCGCTCACAAGACTTTGGCCGCAAA
GTCACAGGCGGCCATGATGCATGTTCGAAGATCATCTGTAGACATACATA
GAATCTGTGCGGCGCTACAACTGGTTCAGAGCACAAGCCCCAACTACTTG
CTGCTTGCATCTTTAGATGGTGCTCGTGCGTTAATGGAGTAGAAAGGAGA
GGAGCTGATGTTACAAACTATACTTCTCGCCCAGAATTGCGCAGTGCGAA
TTGCCAGTATCGAAGGATTCGACGTACTAGGCATGAACGATACGGGAGTT
GGGAAAACCAACTCTTTTGTTTATGATTTGGACCCTACTAGAGTTACAGT
GCTATTACCGGCAGGAATACAAGGCTACGACGTTGACGAATATTTGATTG
CTCAGCATGGTGTCTATGCTGAGCTTCCATCATTTCGTCACTTAACATTC
GTATTCTCTCCCGAGACTACCCAAAGTGACGTTGATGTATTGGTAACAGC
ACTATCATTGTATGACACCACCATACAAAGTAACAGTGCATCCGGGCCAA
TACCCAAAATGACGTGGACGAGAAATGATGCGTTAGGTGAAACAACTGGG
GTAACTCCGCGCCATGCCTTCTTTGCTGATAGTACTGCACTGTGCGCGCA
AGAAGCCATCGGTCGCATCAGTGTTGAGACCCTTTGTCCATATCCTCCAG
GAATACCCATGATCATCGCCGGTGAGCGAGTGACTCATGAAAGTCTTGAT
ATGTTGCAAGCGGTTCTAAAGGCGGGGGGCAGCATATCTGGAGCAAGTGA
TGAAACGCTTTCAACAATTCGTGTTGTCGCCGAATGA

Coding sequence (CDS) from alignment at NODE_9_length_88726_cov_4.624437:29658..31244-

>Gcaud3563.t1 ID=Gcaud3563.t1|Name=Gcaud3563.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1518bp|location=Sequence derived from alignment at NODE_9_length_88726_cov_4.624437:29658..31244- (Gracilaria caudata M_176_S67 male)
TTGGCAGCCCAAGAGCTCGCTCGTCCTTTCACCCCTTTTCGAGCGTGTGC
CCCAAGCGAAATTGGTGTCGAGGCTGTTAGCTCTCGCAAGGTTAATAATG
TAGATACCCCACTTATCTCATCTATTCATCAAGAATCGAAACGTGTGCGA
GCAAATTTGTTCTGTCCCGGACACAAACAGGGAAAGCGTTTGCATTCATC
TTTTCGCAAGTTGACACAAGCGAATGTTCTTGAAGTTGACCTTCCAGAAC
TGCCCGCACTAGATAATCTCTTCACTCCAGGTGGCGTCATTAAAGATGCC
CAAAGGAAGGCAGCAGATGTTTTCACAAAGGATGGATCGCTAGTATGGCA
AACTCATTTCCTGGTGAATGGCACTACATGCGGTATAGAAGCAGCAATTC
TCGCGTGTTCAAGGCCTGGACGAAAGGTAATCTTACCTCGAAATGCTCAC
CAGTCTGCGATACATGCTTTGGTCTTATCTGGTGCAGTTCCTGTTTGGGT
AGCTCCTCGTTATGATTCGCAATATGATCTCGTGCATACCGTTAAGGCAG
AGGATATAGCAGCGGTACCTGAGCAGCACAATGGAGAAGTAGATGCAGTG
CTATTGGTATCACCTACGTACCATGGCGTGTGTCCCGACATTGAGGCAGT
GGCAAGGATCATCCATGAATTTGGAGTTAGACTAATTGTAGATGAAGCTC
ATGGATCTCACCTAACTTTTCATTCTCGCTTGCCAAAGTCTGGAACGGAT
GTGCATGCTGATATTGTCATCCAGAGCGCTCACAAGACTTTGGCCGCAAA
GTCACAGGCGGCCATGATGCATGTTCGAAGATCATCTGTAGACATACATA
GAATCTGTGCGGCGCTACAACTGGTTCAGAGCACAAGCCCCAACTACTTG
CTGCTTGCATCTTTAGATGGTGCTCTGCGAATTGCCAGTATCGAAGGATT
CGACGTACTAGGCATGAACGATACGGGAGTTGGGAAAACCAACTCTTTTG
TTTATGATTTGGACCCTACTAGAGTTACAGTGCTATTACCGGCAGGAATA
CAAGGCTACGACGTTGACGAATATTTGATTGCTCAGCATGGTGTCTATGC
TGAGCTTCCATCATTTCGTCACTTAACATTCGTATTCTCTCCCGAGACTA
CCCAAAGTGACGTTGATGTATTGGTAACAGCACTATCATTGTATGACACC
ACCATACAAAGTAACAGTGCATCCGGGCCAATACCCAAAATGACGTGGAC
GAGAAATGATGCGTTAGGTGAAACAACTGGGGTAACTCCGCGCCATGCCT
TCTTTGCTGATAGTACTGCACTGTGCGCGCAAGAAGCCATCGGTCGCATC
AGTGTTGAGACCCTTTGTCCATATCCTCCAGGAATACCCATGATCATCGC
CGGTGAGCGAGTGACTCATGAAAGTCTTGATATGTTGCAAGCGGTTCTAA
AGGCGGGGGGCAGCATATCTGGAGCAAGTGATGAAACGCTTTCAACAATT
CGTGTTGTCGCCGAATGA