Gcaud3561.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3561.t1
Unique Name	Gcaud3561.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	361

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_9_length_88726_cov_4.624437	contig	NODE_9_length_88726_cov_4.624437:26568..27650 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMS409CT
PFAMs	SurE
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00017
KEGG ko	ko:K03787
KEGG Reaction	R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346
KEGG Pathway	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110
Evalue	9.35e-46
EggNOG OGs	COG0496@1\|root,2QUQI@2759\|Eukaryota
EC	3.1.3.5
Description	5'-nucleotidase activity
COG category	S
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3561	Gcaud3561	Gracilaria caudata M_176_S67 male	gene	NODE_9_length_88726_cov_4.624437 26568..27650 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3561.t1.start1	Gcaud3561.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_9_length_88726_cov_4.624437 26568..26570 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3561.t1.CDS1	Gcaud3561.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_9_length_88726_cov_4.624437 26568..27650 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3561.t1.exon1	Gcaud3561.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_9_length_88726_cov_4.624437 26568..27650 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3561.t1.stop1	Gcaud3561.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_9_length_88726_cov_4.624437 27648..27650 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3561.t1	Gcaud3561.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_9_length_88726_cov_4.624437 26568..27650 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_9_length_88726_cov_4.624437:26568..27650+
coding sequence from alignment at NODE_9_length_88726_cov_4.624437:26568..27650+

mRNA sequence

>Gcaud3561.t1 ID=Gcaud3561.t1|Name=Gcaud3561.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=361bp
MSADHEMRYGRERALLLTNDDGIHPEDAPILPLAQNLVAKGHNVVVVAPG
QNNSACSQRITLGRPLTLRRHPGYEKRFGNAERNGTRNGILKVFSVDKGT
PADCIITAIEPHTGLLAKLGVYPYLTLSGVNYGQNMGSDVLYSGTFAGAR
QAAMYGIPAIAASLDLHKQDWSDVSQEKSCARAIAATVEMAEVVIKNLPS
FPPDMGRLNPELALSSSTIAHDKTRNTTERVRDAFARGDIVFNVNVPKAW
NEKYKMTRLDSLLYRDVVQLEYVPTGEDGHAEETIGINMRSARPDGLLCK
GSDLEAVKRGYASVTAVGTWPNPHPLAISEQLLNDVVQNGLDWIPKSSTL
LQKDVKLNNF*

spliced messenger RNA

>Gcaud3561.t1 ID=Gcaud3561.t1|Name=Gcaud3561.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at NODE_9_length_88726_cov_4.624437:26568..27650+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCTGACCATGAAATGCGATATGGGCGTGAGCGGGCTCTCTTGCT
TACGAATGATGATGGGATTCACCCAGAAGATGCGCCGATCCTCCCTCTTG
CTCAGAATCTGGTTGCGAAAGGTCATAATGTTGTTGTCGTGGCCCCTGGG
CAGAACAATTCCGCCTGCAGCCAGCGTATCACCCTCGGAAGGCCTCTAAC
ATTAAGACGTCACCCTGGGTATGAAAAGCGGTTCGGTAATGCTGAGAGAA
ACGGCACCAGAAACGGAATACTGAAAGTGTTCTCGGTGGACAAAGGAACC
CCTGCAGATTGTATCATAACTGCGATTGAGCCACACACTGGCTTACTTGC
GAAGTTAGGAGTATACCCTTACCTGACACTTTCGGGTGTGAACTACGGTC
AAAACATGGGTAGTGATGTGTTGTACTCTGGAACGTTCGCCGGGGCACGT
CAAGCAGCCATGTATGGGATTCCTGCCATTGCGGCTTCTTTGGACTTGCA
CAAGCAAGATTGGTCTGACGTCTCGCAAGAAAAATCGTGCGCTCGAGCGA
TTGCGGCTACAGTAGAAATGGCTGAAGTCGTGATTAAGAATCTTCCTAGC
TTTCCTCCAGATATGGGTCGACTTAATCCAGAGTTGGCGTTATCTTCTAG
TACAATCGCACACGACAAAACACGGAACACAACTGAACGTGTGCGGGATG
CGTTTGCACGAGGGGATATAGTGTTTAATGTGAATGTTCCCAAAGCGTGG
AACGAAAAGTACAAGATGACTCGATTAGACTCATTGCTCTATCGTGATGT
AGTTCAGCTTGAATATGTACCTACTGGAGAAGATGGTCACGCGGAAGAAA
CGATTGGCATTAATATGCGGAGCGCCCGTCCCGATGGTTTGCTGTGCAAA
GGTTCAGATTTAGAAGCCGTGAAGCGTGGTTATGCGTCAGTTACTGCAGT
TGGCACGTGGCCCAACCCACACCCGCTTGCAATATCGGAGCAGCTTCTGA
ACGATGTCGTTCAAAATGGGTTGGATTGGATACCAAAGAGCTCTACCTTG
CTACAAAAGGACGTTAAGCTCAACAATTTTTAA

protein sequence of Gcaud3561.t1

>Gcaud3561.t1 ID=Gcaud3561.t1|Name=Gcaud3561.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=361bp
MSADHEMRYGRERALLLTNDDGIHPEDAPILPLAQNLVAKGHNVVVVAPG
QNNSACSQRITLGRPLTLRRHPGYEKRFGNAERNGTRNGILKVFSVDKGT
PADCIITAIEPHTGLLAKLGVYPYLTLSGVNYGQNMGSDVLYSGTFAGAR
QAAMYGIPAIAASLDLHKQDWSDVSQEKSCARAIAATVEMAEVVIKNLPS
FPPDMGRLNPELALSSSTIAHDKTRNTTERVRDAFARGDIVFNVNVPKAW
NEKYKMTRLDSLLYRDVVQLEYVPTGEDGHAEETIGINMRSARPDGLLCK
GSDLEAVKRGYASVTAVGTWPNPHPLAISEQLLNDVVQNGLDWIPKSSTL
LQKDVKLNNF*

mRNA from alignment at NODE_9_length_88726_cov_4.624437:26568..27650+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3561.t1 ID=Gcaud3561.t1|Name=Gcaud3561.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at NODE_9_length_88726_cov_4.624437:26568..27650+ (Gracilaria caudata M_176_S67 male)
ATGTCGGCTGACCATGAAATGCGATATGGGCGTGAGCGGGCTCTCTTGCT
TACGAATGATGATGGGATTCACCCAGAAGATGCGCCGATCCTCCCTCTTG
CTCAGAATCTGGTTGCGAAAGGTCATAATGTTGTTGTCGTGGCCCCTGGG
CAGAACAATTCCGCCTGCAGCCAGCGTATCACCCTCGGAAGGCCTCTAAC
ATTAAGACGTCACCCTGGGTATGAAAAGCGGTTCGGTAATGCTGAGAGAA
ACGGCACCAGAAACGGAATACTGAAAGTGTTCTCGGTGGACAAAGGAACC
CCTGCAGATTGTATCATAACTGCGATTGAGCCACACACTGGCTTACTTGC
GAAGTTAGGAGTATACCCTTACCTGACACTTTCGGGTGTGAACTACGGTC
AAAACATGGGTAGTGATGTGTTGTACTCTGGAACGTTCGCCGGGGCACGT
CAAGCAGCCATGTATGGGATTCCTGCCATTGCGGCTTCTTTGGACTTGCA
CAAGCAAGATTGGTCTGACGTCTCGCAAGAAAAATCGTGCGCTCGAGCGA
TTGCGGCTACAGTAGAAATGGCTGAAGTCGTGATTAAGAATCTTCCTAGC
TTTCCTCCAGATATGGGTCGACTTAATCCAGAGTTGGCGTTATCTTCTAG
TACAATCGCACACGACAAAACACGGAACACAACTGAACGTGTGCGGGATG
CGTTTGCACGAGGGGATATAGTGTTTAATGTGAATGTTCCCAAAGCGTGG
AACGAAAAGTACAAGATGACTCGATTAGACTCATTGCTCTATCGTGATGT
AGTTCAGCTTGAATATGTACCTACTGGAGAAGATGGTCACGCGGAAGAAA
CGATTGGCATTAATATGCGGAGCGCCCGTCCCGATGGTTTGCTGTGCAAA
GGTTCAGATTTAGAAGCCGTGAAGCGTGGTTATGCGTCAGTTACTGCAGT
TGGCACGTGGCCCAACCCACACCCGCTTGCAATATCGGAGCAGCTTCTGA
ACGATGTCGTTCAAAATGGGTTGGATTGGATACCAAAGAGCTCTACCTTG
CTACAAAAGGACGTTAAGCTCAACAATTTTTAA

Coding sequence (CDS) from alignment at NODE_9_length_88726_cov_4.624437:26568..27650+

>Gcaud3561.t1 ID=Gcaud3561.t1|Name=Gcaud3561.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1083bp|location=Sequence derived from alignment at NODE_9_length_88726_cov_4.624437:26568..27650+ (Gracilaria caudata M_176_S67 male)
ATGTCGGCTGACCATGAAATGCGATATGGGCGTGAGCGGGCTCTCTTGCT
TACGAATGATGATGGGATTCACCCAGAAGATGCGCCGATCCTCCCTCTTG
CTCAGAATCTGGTTGCGAAAGGTCATAATGTTGTTGTCGTGGCCCCTGGG
CAGAACAATTCCGCCTGCAGCCAGCGTATCACCCTCGGAAGGCCTCTAAC
ATTAAGACGTCACCCTGGGTATGAAAAGCGGTTCGGTAATGCTGAGAGAA
ACGGCACCAGAAACGGAATACTGAAAGTGTTCTCGGTGGACAAAGGAACC
CCTGCAGATTGTATCATAACTGCGATTGAGCCACACACTGGCTTACTTGC
GAAGTTAGGAGTATACCCTTACCTGACACTTTCGGGTGTGAACTACGGTC
AAAACATGGGTAGTGATGTGTTGTACTCTGGAACGTTCGCCGGGGCACGT
CAAGCAGCCATGTATGGGATTCCTGCCATTGCGGCTTCTTTGGACTTGCA
CAAGCAAGATTGGTCTGACGTCTCGCAAGAAAAATCGTGCGCTCGAGCGA
TTGCGGCTACAGTAGAAATGGCTGAAGTCGTGATTAAGAATCTTCCTAGC
TTTCCTCCAGATATGGGTCGACTTAATCCAGAGTTGGCGTTATCTTCTAG
TACAATCGCACACGACAAAACACGGAACACAACTGAACGTGTGCGGGATG
CGTTTGCACGAGGGGATATAGTGTTTAATGTGAATGTTCCCAAAGCGTGG
AACGAAAAGTACAAGATGACTCGATTAGACTCATTGCTCTATCGTGATGT
AGTTCAGCTTGAATATGTACCTACTGGAGAAGATGGTCACGCGGAAGAAA
CGATTGGCATTAATATGCGGAGCGCCCGTCCCGATGGTTTGCTGTGCAAA
GGTTCAGATTTAGAAGCCGTGAAGCGTGGTTATGCGTCAGTTACTGCAGT
TGGCACGTGGCCCAACCCACACCCGCTTGCAATATCGGAGCAGCTTCTGA
ACGATGTCGTTCAAAATGGGTTGGATTGGATACCAAAGAGCTCTACCTTG
CTACAAAAGGACGTTAAGCTCAACAATTTTTAA