Gcaud3554.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3554.t1
Unique NameGcaud3554.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length170
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_9_length_88726_cov_4.624437contigNODE_9_length_88726_cov_4.624437:4757..5548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3554Gcaud3554Gracilaria caudata M_176_S67 malegeneNODE_9_length_88726_cov_4.624437 4757..5548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3554.t1Gcaud3554.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_9_length_88726_cov_4.624437 4757..5548 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3554.t1.start1Gcaud3554.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_9_length_88726_cov_4.624437 4757..4759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3554.t1.CDS1Gcaud3554.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_9_length_88726_cov_4.624437 4757..5158 +
Gcaud3554.t1.CDS2Gcaud3554.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_9_length_88726_cov_4.624437 5254..5322 +
Gcaud3554.t1.CDS3Gcaud3554.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_9_length_88726_cov_4.624437 5510..5548 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3554.t1.exon1Gcaud3554.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_9_length_88726_cov_4.624437 4757..5158 +
Gcaud3554.t1.exon2Gcaud3554.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_9_length_88726_cov_4.624437 5254..5322 +
Gcaud3554.t1.exon3Gcaud3554.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_9_length_88726_cov_4.624437 5510..5548 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3554.t1.intron1Gcaud3554.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_9_length_88726_cov_4.624437 5159..5253 +
Gcaud3554.t1.intron2Gcaud3554.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_9_length_88726_cov_4.624437 5323..5509 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3554.t1.stop1Gcaud3554.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_9_length_88726_cov_4.624437 5546..5548 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3554.t1 ID=Gcaud3554.t1|Name=Gcaud3554.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=170bp
MSHSSDSPRRARPRLTEQIQVIRELWLLRESARVRAAEHRFMAQLERLFG
ANAYSSPPPPQPRVSFVPVGATRVPTPPVAPPPPPLGRRSLWRNNDGGVF
ESQPQPRGDASPARERRPAFPEGIEVLRARQPVTNLSAQFRARLEGDDTQ
HHPYRGISLLHWSRACNRK*
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spliced messenger RNA

>Gcaud3554.t1 ID=Gcaud3554.t1|Name=Gcaud3554.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=510bp|location=Sequence derived from alignment at NODE_9_length_88726_cov_4.624437:4757..5548+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCACTCTTCTGACTCGCCGCGCCGCGCGCGCCCGCGCCTCACGGA
GCAGATCCAAGTCATCCGCGAGCTTTGGCTGCTTCGAGAAAGCGCTCGCG
TGCGCGCTGCAGAGCATCGTTTCATGGCGCAGCTTGAGCGTCTGTTTGGA
GCAAATGCGTATTCTTCCccgccgccgccgcagccgcGTGTCTCCTTCGT
GCCGGTTGGCGCCACACGCGTTCCAACGCCGCCTGTCGCACCGCCACCAC
CCCCACTGGGTAGACGCTCGCTGTGGCGTAATAATGATGGCGGCGTGTTC
GAGAGCCAACCGCAGCCGAGGGGTGACGCCTCACCTGCGCGGGAGCGTCG
TCCAGCTTTCCCGGAAGGCATTGAAGTACTTCGTGCTCGCCAACCGGTTA
CGAATCTCAGCGCGCAGTTTCGAGCACGTCTTGAAGGTGATGACACTCAG
CATCATCCGTACCGGGGAATTAGCTTGCTTCATTGGTCAAGAGCTTGCAA
CAGGAAGTAA
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protein sequence of Gcaud3554.t1

>Gcaud3554.t1 ID=Gcaud3554.t1|Name=Gcaud3554.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=170bp
MSHSSDSPRRARPRLTEQIQVIRELWLLRESARVRAAEHRFMAQLERLFG
ANAYSSPPPPQPRVSFVPVGATRVPTPPVAPPPPPLGRRSLWRNNDGGVF
ESQPQPRGDASPARERRPAFPEGIEVLRARQPVTNLSAQFRARLEGDDTQ
HHPYRGISLLHWSRACNRK*
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mRNA from alignment at NODE_9_length_88726_cov_4.624437:4757..5548+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3554.t1 ID=Gcaud3554.t1|Name=Gcaud3554.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=792bp|location=Sequence derived from alignment at NODE_9_length_88726_cov_4.624437:4757..5548+ (Gracilaria caudata M_176_S67 male)
ATGTCCCACTCTTCTGACTCGCCGCGCCGCGCGCGCCCGCGCCTCACGGA
GCAGATCCAAGTCATCCGCGAGCTTTGGCTGCTTCGAGAAAGCGCTCGCG
TGCGCGCTGCAGAGCATCGTTTCATGGCGCAGCTTGAGCGTCTGTTTGGA
GCAAATGCGTATTCTTCCccgccgccgccgcagccgcGTGTCTCCTTCGT
GCCGGTTGGCGCCACACGCGTTCCAACGCCGCCTGTCGCACCGCCACCAC
CCCCACTGGGTAGACGCTCGCTGTGGCGTAATAATGATGGCGGCGTGTTC
GAGAGCCAACCGCAGCCGAGGGGTGACGCCTCACCTGCGCGGGAGCGTCG
TCCAGCTTTCCCGGAAGGCATTGAAGTACTTCGTGCTCGCCAACCGGTTA
CGGTATGTGTTCTCGCTCTCTCGCTATCACTCGTGCTTCTGTTTTGCGTT
CTTTGCGTTCGCTTTCGTTCTCACACGCTTGTTCATGTGCGGCGTAGAAT
CTCAGCGCGCAGTTTCGAGCACGTCTTGAAGGTGATGACACTCAGCATCA
TCCGTACCGGGGAATTGTGCGTTCACGGTCTTTTGGGCAGCTCAGTCGTC
AGAGAGCGGTTTCAGCGCTTCTCGAGTCAGAATTCCGACACCACTTAGAG
GCGCTTATATCGCGTGGCGACACCAGGCCTGCTACAACAGCACCATTGCC
ATCTCAACTTGATCTTGACCTTGACCAATCCATGTCACATGCATCGCATA
CAGAGCTTGCTTCATTGGTCAAGAGCTTGCAACAGGAAGTAA
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Coding sequence (CDS) from alignment at NODE_9_length_88726_cov_4.624437:4757..5548+

>Gcaud3554.t1 ID=Gcaud3554.t1|Name=Gcaud3554.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=510bp|location=Sequence derived from alignment at NODE_9_length_88726_cov_4.624437:4757..5548+ (Gracilaria caudata M_176_S67 male)
ATGTCCCACTCTTCTGACTCGCCGCGCCGCGCGCGCCCGCGCCTCACGGA
GCAGATCCAAGTCATCCGCGAGCTTTGGCTGCTTCGAGAAAGCGCTCGCG
TGCGCGCTGCAGAGCATCGTTTCATGGCGCAGCTTGAGCGTCTGTTTGGA
GCAAATGCGTATTCTTCCccgccgccgccgcagccgcGTGTCTCCTTCGT
GCCGGTTGGCGCCACACGCGTTCCAACGCCGCCTGTCGCACCGCCACCAC
CCCCACTGGGTAGACGCTCGCTGTGGCGTAATAATGATGGCGGCGTGTTC
GAGAGCCAACCGCAGCCGAGGGGTGACGCCTCACCTGCGCGGGAGCGTCG
TCCAGCTTTCCCGGAAGGCATTGAAGTACTTCGTGCTCGCCAACCGGTTA
CGAATCTCAGCGCGCAGTTTCGAGCACGTCTTGAAGGTGATGACACTCAG
CATCATCCGTACCGGGGAATTAGCTTGCTTCATTGGTCAAGAGCTTGCAA
CAGGAAGTAA
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