Gcaud3550.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3550.t1
Unique Name	Gcaud3550.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	408

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_237_length_34827_cov_4.750864	contig	NODE_237_length_34827_cov_4.750864:32056..33451 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3550	Gcaud3550	Gracilaria caudata M_176_S67 male	gene	NODE_237_length_34827_cov_4.750864 32056..33451 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3550.t1	Gcaud3550.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_237_length_34827_cov_4.750864 32056..33451 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3550.t1.start1	Gcaud3550.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_237_length_34827_cov_4.750864 32056..32058 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3550.t1.CDS1	Gcaud3550.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_237_length_34827_cov_4.750864 32056..33068 +
Gcaud3550.t1.CDS2	Gcaud3550.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_237_length_34827_cov_4.750864 33137..33206 +
Gcaud3550.t1.CDS3	Gcaud3550.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_237_length_34827_cov_4.750864 33311..33451 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3550.t1.exon1	Gcaud3550.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_237_length_34827_cov_4.750864 32056..33068 +
Gcaud3550.t1.exon2	Gcaud3550.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_237_length_34827_cov_4.750864 33137..33206 +
Gcaud3550.t1.exon3	Gcaud3550.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_237_length_34827_cov_4.750864 33311..33451 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3550.t1.intron1	Gcaud3550.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_237_length_34827_cov_4.750864 33069..33136 +
Gcaud3550.t1.intron2	Gcaud3550.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_237_length_34827_cov_4.750864 33207..33310 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3550.t1.stop1	Gcaud3550.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_237_length_34827_cov_4.750864 33449..33451 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_237_length_34827_cov_4.750864:32056..33451+
coding sequence from alignment at NODE_237_length_34827_cov_4.750864:32056..33451+

mRNA sequence

>Gcaud3550.t1 ID=Gcaud3550.t1|Name=Gcaud3550.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=408bp
MSSRGARPDLTHVLYIESALASLESTIRRGIAPDSLAKFHPLEKLADLYL
ERPAGHRLDNIDRALASYALASRTAACALQPSADLNRARLSAKLAKCWYL
RWQYVSHHCADMPLVKRAHLRAAADAIDIALQRYDDCRDWEHDADQCVVY
KHALLCKGFIYHAMCTNMDLQTFCDVQSDDVDLQDKQNLWRRMYVNSCIQ
SLEKALLSRAPGQPCDPPQSNQSETKPPYVNKSQVTCNSSVQKCIQLDVH
NATKARAIICLARAYVDVSNTASEKVSSALNLLGGVEGMLEDVDVNKHHD
GFVVKEDDLQRMKEDSKCLQRLLKQNRPAASEGGCIISGSIRVSQFQGLY
CFADASFSRIQALIRRQQSVLAYCASDMNMPLLTTLNVFHRIEAHMPDLL
AVIGRTD*

spliced messenger RNA

>Gcaud3550.t1 ID=Gcaud3550.t1|Name=Gcaud3550.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1224bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:32056..33451+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCGAGAGGCGCGCGCCCTGACCTCACGCATGTGTTGTACATTGA
GAGCGCTCTAGCTTCCCTTGAAAGCACGATACGCCGTGGGATTGCTCCAG
ACTCTCTTGCGAAGTTCCACCCGTTGGAGAAGTTGGCTGACCTTTACTTG
GAGCGCCCCGCAGGTCATCGGCTGGATAATATTGATCGTGCTTTGGCGTC
GTATGCGCTTGCTTCGAGGACTGCCGCATGCGCGTTGCAACCGTCTGCTG
ACCTCAATCGTGCGAGATTGTCGGCAAAGCTGGCAAAGTGTTGGTACTTG
AGGTGGCAGTATGTTTCTCACCATTGTGCGGATATGCCGCTTGTGAAACG
TGCACACTTGAGGGCTGCCGCAGATGCGATTGATATTGCTTTGCAGCGTT
ATGATGATTGTCGTGATTGGGAGCATGATGCCGATCAATGTGTCGTCTAT
AAACACGCGTTGTTGTGTAAGGGTTTCATATATCATGCTATGTGTACCAA
CATGGATCTTCAAACATTTTGTGACGTTCAGTCTGATGACGTTGATCTTC
AAGACAAGCAGAATCTTTGGCGGCGTATGTATGTTAACAGTTGTATCCAA
TCTTTGGAAAAAGCTCTCTTGTCTCGAGCCCCAGGACAGCCATGCGACCC
ACCTCAATCCAATCAAAGCGAAACGAAGCCCCCTTATGTGAACAAATCCC
AAGTTACTTGTAATTCATCTGTACAAAAATGTATTCAACTTGACGTCCAT
AACGCCACAAAGGCACGCGCTATTATATGTCTTGCCCGGGCGTATGTCGA
TGTATCAAACACCGCTTCCGAAAAGGTGTCCAGTGCACTCAACCTGTTGG
GAGGCGTAGAAGGGATGTTGGAAGATGTCGACGTGAACAAACACCATGAC
GGATTTGTTGTCAAGGAAGATGATTTGCAACGCATGAAAGAAGACTCCAA
GTGTCTTCAGCGCTTGCTTAAGCAGAATCGTCCCGCTGCCTCTGAGGGTG
GCTGTATCATATCCGGAAGCATTCGTGTTTCACAGTTCCAGGGATTGTAT
TGCTTTGCAGATGCTTCTTTCTCACGCATTCAGGCGCTAATTCGTAGACA
GCAGTCGGTGTTAGCCTACTGTGCCTCGGATATGAATATGCCATTGTTAA
CAACGCTCAACGTTTTCCATCGTATTGAAGCCCACATGCCGGACTTACTG
GCTGTCATCGGTCGTACAGATTAA

protein sequence of Gcaud3550.t1

>Gcaud3550.t1 ID=Gcaud3550.t1|Name=Gcaud3550.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=408bp
MSSRGARPDLTHVLYIESALASLESTIRRGIAPDSLAKFHPLEKLADLYL
ERPAGHRLDNIDRALASYALASRTAACALQPSADLNRARLSAKLAKCWYL
RWQYVSHHCADMPLVKRAHLRAAADAIDIALQRYDDCRDWEHDADQCVVY
KHALLCKGFIYHAMCTNMDLQTFCDVQSDDVDLQDKQNLWRRMYVNSCIQ
SLEKALLSRAPGQPCDPPQSNQSETKPPYVNKSQVTCNSSVQKCIQLDVH
NATKARAIICLARAYVDVSNTASEKVSSALNLLGGVEGMLEDVDVNKHHD
GFVVKEDDLQRMKEDSKCLQRLLKQNRPAASEGGCIISGSIRVSQFQGLY
CFADASFSRIQALIRRQQSVLAYCASDMNMPLLTTLNVFHRIEAHMPDLL
AVIGRTD*

mRNA from alignment at NODE_237_length_34827_cov_4.750864:32056..33451+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3550.t1 ID=Gcaud3550.t1|Name=Gcaud3550.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1396bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:32056..33451+ (Gracilaria caudata M_176_S67 male)
ATGTCTTCGAGAGGCGCGCGCCCTGACCTCACGCATGTGTTGTACATTGA
GAGCGCTCTAGCTTCCCTTGAAAGCACGATACGCCGTGGGATTGCTCCAG
ACTCTCTTGCGAAGTTCCACCCGTTGGAGAAGTTGGCTGACCTTTACTTG
GAGCGCCCCGCAGGTCATCGGCTGGATAATATTGATCGTGCTTTGGCGTC
GTATGCGCTTGCTTCGAGGACTGCCGCATGCGCGTTGCAACCGTCTGCTG
ACCTCAATCGTGCGAGATTGTCGGCAAAGCTGGCAAAGTGTTGGTACTTG
AGGTGGCAGTATGTTTCTCACCATTGTGCGGATATGCCGCTTGTGAAACG
TGCACACTTGAGGGCTGCCGCAGATGCGATTGATATTGCTTTGCAGCGTT
ATGATGATTGTCGTGATTGGGAGCATGATGCCGATCAATGTGTCGTCTAT
AAACACGCGTTGTTGTGTAAGGGTTTCATATATCATGCTATGTGTACCAA
CATGGATCTTCAAACATTTTGTGACGTTCAGTCTGATGACGTTGATCTTC
AAGACAAGCAGAATCTTTGGCGGCGTATGTATGTTAACAGTTGTATCCAA
TCTTTGGAAAAAGCTCTCTTGTCTCGAGCCCCAGGACAGCCATGCGACCC
ACCTCAATCCAATCAAAGCGAAACGAAGCCCCCTTATGTGAACAAATCCC
AAGTTACTTGTAATTCATCTGTACAAAAATGTATTCAACTTGACGTCCAT
AACGCCACAAAGGCACGCGCTATTATATGTCTTGCCCGGGCGTATGTCGA
TGTATCAAACACCGCTTCCGAAAAGGTGTCCAGTGCACTCAACCTGTTGG
GAGGCGTAGAAGGGATGTTGGAAGATGTCGACGTGAACAAACACCATGAC
GGATTTGTTGTCAAGGAAGATGATTTGCAACGCATGAAAGAAGACTCCAA
GTGTCTTCAGCGCTTGCTTAAGCAGAATCGTCCCGCTGCCTCTGAGGGTG
GCTGTATCATATCGTAGCACGTATTCTGCTCACTACATGTATGAAGTGAA
TCGCTCTTTGTTTGTATAACCAACCTTGCAGCGGAAGCATTCGTGTTTCA
CAGTTCCAGGGATTGTATTGCTTTGCAGATGCTTCTTTCTCACGCATTCA
GGTTTGTCTCGATGTTTTCTTGCATATCTTTTGCTGGTTTCCCTTGTCGT
TTTTACTTACATTCACATGCAATTCCCTTCCTTTCTGTGGCTTCTACACA
CGTAGGCGCTAATTCGTAGACAGCAGTCGGTGTTAGCCTACTGTGCCTCG
GATATGAATATGCCATTGTTAACAACGCTCAACGTTTTCCATCGTATTGA
AGCCCACATGCCGGACTTACTGGCTGTCATCGGTCGTACAGATTAA

Coding sequence (CDS) from alignment at NODE_237_length_34827_cov_4.750864:32056..33451+

>Gcaud3550.t1 ID=Gcaud3550.t1|Name=Gcaud3550.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1224bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:32056..33451+ (Gracilaria caudata M_176_S67 male)
ATGTCTTCGAGAGGCGCGCGCCCTGACCTCACGCATGTGTTGTACATTGA
GAGCGCTCTAGCTTCCCTTGAAAGCACGATACGCCGTGGGATTGCTCCAG
ACTCTCTTGCGAAGTTCCACCCGTTGGAGAAGTTGGCTGACCTTTACTTG
GAGCGCCCCGCAGGTCATCGGCTGGATAATATTGATCGTGCTTTGGCGTC
GTATGCGCTTGCTTCGAGGACTGCCGCATGCGCGTTGCAACCGTCTGCTG
ACCTCAATCGTGCGAGATTGTCGGCAAAGCTGGCAAAGTGTTGGTACTTG
AGGTGGCAGTATGTTTCTCACCATTGTGCGGATATGCCGCTTGTGAAACG
TGCACACTTGAGGGCTGCCGCAGATGCGATTGATATTGCTTTGCAGCGTT
ATGATGATTGTCGTGATTGGGAGCATGATGCCGATCAATGTGTCGTCTAT
AAACACGCGTTGTTGTGTAAGGGTTTCATATATCATGCTATGTGTACCAA
CATGGATCTTCAAACATTTTGTGACGTTCAGTCTGATGACGTTGATCTTC
AAGACAAGCAGAATCTTTGGCGGCGTATGTATGTTAACAGTTGTATCCAA
TCTTTGGAAAAAGCTCTCTTGTCTCGAGCCCCAGGACAGCCATGCGACCC
ACCTCAATCCAATCAAAGCGAAACGAAGCCCCCTTATGTGAACAAATCCC
AAGTTACTTGTAATTCATCTGTACAAAAATGTATTCAACTTGACGTCCAT
AACGCCACAAAGGCACGCGCTATTATATGTCTTGCCCGGGCGTATGTCGA
TGTATCAAACACCGCTTCCGAAAAGGTGTCCAGTGCACTCAACCTGTTGG
GAGGCGTAGAAGGGATGTTGGAAGATGTCGACGTGAACAAACACCATGAC
GGATTTGTTGTCAAGGAAGATGATTTGCAACGCATGAAAGAAGACTCCAA
GTGTCTTCAGCGCTTGCTTAAGCAGAATCGTCCCGCTGCCTCTGAGGGTG
GCTGTATCATATCCGGAAGCATTCGTGTTTCACAGTTCCAGGGATTGTAT
TGCTTTGCAGATGCTTCTTTCTCACGCATTCAGGCGCTAATTCGTAGACA
GCAGTCGGTGTTAGCCTACTGTGCCTCGGATATGAATATGCCATTGTTAA
CAACGCTCAACGTTTTCCATCGTATTGAAGCCCACATGCCGGACTTACTG
GCTGTCATCGGTCGTACAGATTAA