Gcaud3548.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3548.t1
Unique Name	Gcaud3548.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	720

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_237_length_34827_cov_4.750864	contig	NODE_237_length_34827_cov_4.750864:28547..30706 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	31033.ENSTRUP00000034421
Preferred name	SDAD1
PFAMs	NUC130_3NT,SDA1
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K14856
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006996,GO:0007010,GO:0008150,GO:0009987,GO:0010033,GO:0016043,GO:0022613,GO:0030029,GO:0030036,GO:0031974,GO:0031981,GO:0034097,GO:0042221,GO:0042254,GO:0042273,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0070013,GO:0070887,GO:0071310,GO:0071345,GO:0071840,GO:1990823,GO:1990830
Evalue	1.58e-101
EggNOG OGs	KOG2229@1\|root,KOG2229@2759\|Eukaryota,38BYQ@33154\|Opisthokonta,3B9QQ@33208\|Metazoa,3CZ14@33213\|Bilateria,4808G@7711\|Chordata,48XZ0@7742\|Vertebrata,49QNW@7898\|Actinopterygii
Description	SDA1 domain containing 1
COG category	DZ
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3548	Gcaud3548	Gracilaria caudata M_176_S67 male	gene	NODE_237_length_34827_cov_4.750864 28547..30706 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3548.t1.start1	Gcaud3548.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_237_length_34827_cov_4.750864 28547..28549 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3548.t1.CDS1	Gcaud3548.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_237_length_34827_cov_4.750864 28547..30706 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3548.t1.exon1	Gcaud3548.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_237_length_34827_cov_4.750864 28547..30706 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3548.t1.stop1	Gcaud3548.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_237_length_34827_cov_4.750864 30704..30706 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3548.t1	Gcaud3548.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_237_length_34827_cov_4.750864 28547..30706 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_237_length_34827_cov_4.750864:28547..30706+
coding sequence from alignment at NODE_237_length_34827_cov_4.750864:28547..30706+

mRNA sequence

>Gcaud3548.t1 ID=Gcaud3548.t1|Name=Gcaud3548.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=720bp
MILQERCRKDPLSYRDDFLTQRRHFDALLSAANLNPSGPNPRLAEVASFM
SAVAHCYGSEGNRIATEITTFLGEYGQAMNPDLRRSLVRLLCLLRARGAA
DPTAVIPLFFRLLSCSDKVLRRMVHGHIVSDIKKIQNSGHSSRKQLQTFL
FSMVQDPSEVLVKRSLHVLVDLFRKRIWNDAKCANMIATACFHQAISVST
IASRFMLNSESKEHSQDSDDESDDESAEMTRTTRDGHKASDMWKAYNMTG
KKSTKQKKKMERIINRATRLKSSVNCRAISEKNPGHPQLEAMMLINDPQE
FAERLFKDLQTRRKKETYENRLIFINLISRLVGTHELILFTFYPFLQRYL
QPAQPEVTRVLAYLTQACHEKVPADVLHPILRGLADTFVSERSSPPSVAA
GINTIRAICSRVPLAILDEENECKPEPEQEAALLEDLVQYKTSKDKGIMM
AARSLIALYREVHPGLLQKRDRGRAGAQAVQKGEAVHARAYGEHRYATGV
EGIELLNAADSDEDEGGESDGEIDAGIDAGDDNVKNNAKNAAEDGDEGGA
DKDENQQVNTDEECEADSDDEENEGEEETTEEINVEGDDGDGIGDTKRLD
TMQVLSNEDFEKIRVRRAAKALGQSVRELNTGRVVDPDEIQGPVRRERLT
HEERMESILKGREGREKFGRKNGKGGGTSNKQKLKKKSNAMVIHKRRKRN
KQMSRRDKQIAKRRKRDYR*

spliced messenger RNA

>Gcaud3548.t1 ID=Gcaud3548.t1|Name=Gcaud3548.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2160bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:28547..30706+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCTTCAGGAAAGATGTCGGAAGGACCCGCTTTCCTACAGAGATGA
TTTTCTAACCCAACGCCGTCATTTTGATGCTCTTCTGTCCGCAGCCAATT
TAAATCCATCTGGTCCCAATCCCCGCCTTGCGGAGGTTGCCTCGTTCATG
AGCGCTGTTGCACACTGCTACGGTTCTGAGGGGAACAGAATAGCCACTGA
AATAACCACCTTTCTTGGCGAATATGGTCAAGCTATGAATCCAGACTTGC
GACGTTCGCTTGTTCGACTGTTATGCCTCCTACGAGCGAGAGGCGCTGCA
GACCCCACCGCAGTCATTCCATTATTTTTTCGCCTTCTGTCGTGCAGTGA
TAAAGTGTTACGACGAATGGTTCACGGACACATCGTATCAGATATCAAGA
AGATTCAGAACAGTGGCCATTCCAGTCGTAAGCAGTTGCAAACTTTTTTG
TTTTCAATGGTGCAAGACCCCAGTGAAGTTCTGGTTAAGCGAAGTTTACA
CGTGCTGGTGGATTTGTTCCGAAAGCGAATATGGAATGATGCTAAATGTG
CCAATATGATCGCAACTGCATGTTTCCATCAAGCCATTTCTGTATCTACC
ATTGCGTCGAGATTTATGCTCAACTCGGAAAGCAAGGAACATAGCCAAGA
TTCCGACGATGAATCAGACGATGAGAGTGCGGAGATGACGCGTACAACGA
GGGATGGACACAAAGCCTCTGACATGTGGAAGGCTTACAATATGACCGGG
AAAAAGTCGACGAAGCAGAAGAAGAAAATGGAGAGAATCATAAACAGAGC
AACTCGACTAAAGAGTTCAGTGAATTGTAGAGCAATATCGGAGAAAAATC
CTGGACATCCGCAACTGGAAGCCATGATGCTCATCAATGACCCGCAAGAG
TTCGCAGAACGGCTTTTCAAAGATCTTCAGACGAGAAGGAAAAAGGAGAC
TTATGAGAACCGCCTTATCTTTATTAACTTGATATCTCGACTCGTTGGCA
CTCATGAACTTATTCTGTTTACCTTTTACCCTTTCTTGCAGAGATACCTG
CAACCTGCTCAACCAGAAGTAACACGGGTTCTCGCTTATTTAACTCAAGC
ATGTCACGAGAAAGTTCCTGCCGACGTGCTTCATCCTATCCTAAGGGGTC
TTGCGGATACGTTTGTTTCTGAGCGAAGTTCACCTCCCTCTGTAGCTGCT
GGTATAAACACGATTCGGGCCATTTGTTCTCGTGTTCCGCTCGCTATATT
GGACGAAGAGAATGAGTGCAAACCTGAACCGGAACAGGAAGCGGCATTGT
TGGAAGATCTGGTACAGTACAAGACGAGCAAGGACAAAGGCATTATGATG
GCGGCTAGATCCTTGATTGCTCTGTACAGAGAAGTGCATCCTGGTTTACT
GCAAAAGAGGGACAGGGGTCGTGCCGGGGCTCAAGCCGTGCAGAAGGGAG
AGGCCGTGCATGCTAGAGCATATGGGGAGCATAGGTACGCTACGGGAGTA
GAAGGAATTGAACTTTTGAACGCCGCAGATTCTGACGAAGACGAAGGGGG
CGAATCTGATGGGGAAATTGATGCTGGTATTGATGCGGGAGATGATAACG
TGAAAAACAATGCGAAAAACGCCGCTGAAGATGGTGATGAGGGTGGTGCT
GATAAGGACGAAAACCAACAGGTGAATACTGATGAAGAGTGTGAAGCCGA
TAGTGACGATGAAGAAAATGAAGGCGAAGAAGAGACAACAGAAGAGATAA
ATGTTGAAGGCGATGATGGTGATGGAATCGGCGACACGAAACGGTTGGAC
ACCATGCAGGTTCTCTCAAACGAGGACTTTGAGAAGATCCGCGTTCGACG
TGCTGCCAAGGCGCTTGGGCAAAGCGTGAGAGAGCTTAATACAGGGAGAG
TAGTGGATCCAGATGAAATTCAGGGACCCGTAAGACGGGAACGTCTCACG
CACGAGGAACGCATGGAGAGCATTTTGAAAGGAAGGGAAGGACGGGAAAA
ATTCGGAAGAAAGAACGGTAAAGGCGGCGGTACAAGTAACAAACAAAAAC
TGAAGAAGAAGTCCAATGCAATGGTGATACATAAACGAAGAAAACGAAAC
AAGCAAATGTCTCGAAGAGATAAACAGATTGCGAAGCGAAGGAAGAGAGA
CTACCGGTGA

protein sequence of Gcaud3548.t1

>Gcaud3548.t1 ID=Gcaud3548.t1|Name=Gcaud3548.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=720bp
MILQERCRKDPLSYRDDFLTQRRHFDALLSAANLNPSGPNPRLAEVASFM
SAVAHCYGSEGNRIATEITTFLGEYGQAMNPDLRRSLVRLLCLLRARGAA
DPTAVIPLFFRLLSCSDKVLRRMVHGHIVSDIKKIQNSGHSSRKQLQTFL
FSMVQDPSEVLVKRSLHVLVDLFRKRIWNDAKCANMIATACFHQAISVST
IASRFMLNSESKEHSQDSDDESDDESAEMTRTTRDGHKASDMWKAYNMTG
KKSTKQKKKMERIINRATRLKSSVNCRAISEKNPGHPQLEAMMLINDPQE
FAERLFKDLQTRRKKETYENRLIFINLISRLVGTHELILFTFYPFLQRYL
QPAQPEVTRVLAYLTQACHEKVPADVLHPILRGLADTFVSERSSPPSVAA
GINTIRAICSRVPLAILDEENECKPEPEQEAALLEDLVQYKTSKDKGIMM
AARSLIALYREVHPGLLQKRDRGRAGAQAVQKGEAVHARAYGEHRYATGV
EGIELLNAADSDEDEGGESDGEIDAGIDAGDDNVKNNAKNAAEDGDEGGA
DKDENQQVNTDEECEADSDDEENEGEEETTEEINVEGDDGDGIGDTKRLD
TMQVLSNEDFEKIRVRRAAKALGQSVRELNTGRVVDPDEIQGPVRRERLT
HEERMESILKGREGREKFGRKNGKGGGTSNKQKLKKKSNAMVIHKRRKRN
KQMSRRDKQIAKRRKRDYR*

mRNA from alignment at NODE_237_length_34827_cov_4.750864:28547..30706+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3548.t1 ID=Gcaud3548.t1|Name=Gcaud3548.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2160bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:28547..30706+ (Gracilaria caudata M_176_S67 male)
ATGATTCTTCAGGAAAGATGTCGGAAGGACCCGCTTTCCTACAGAGATGA
TTTTCTAACCCAACGCCGTCATTTTGATGCTCTTCTGTCCGCAGCCAATT
TAAATCCATCTGGTCCCAATCCCCGCCTTGCGGAGGTTGCCTCGTTCATG
AGCGCTGTTGCACACTGCTACGGTTCTGAGGGGAACAGAATAGCCACTGA
AATAACCACCTTTCTTGGCGAATATGGTCAAGCTATGAATCCAGACTTGC
GACGTTCGCTTGTTCGACTGTTATGCCTCCTACGAGCGAGAGGCGCTGCA
GACCCCACCGCAGTCATTCCATTATTTTTTCGCCTTCTGTCGTGCAGTGA
TAAAGTGTTACGACGAATGGTTCACGGACACATCGTATCAGATATCAAGA
AGATTCAGAACAGTGGCCATTCCAGTCGTAAGCAGTTGCAAACTTTTTTG
TTTTCAATGGTGCAAGACCCCAGTGAAGTTCTGGTTAAGCGAAGTTTACA
CGTGCTGGTGGATTTGTTCCGAAAGCGAATATGGAATGATGCTAAATGTG
CCAATATGATCGCAACTGCATGTTTCCATCAAGCCATTTCTGTATCTACC
ATTGCGTCGAGATTTATGCTCAACTCGGAAAGCAAGGAACATAGCCAAGA
TTCCGACGATGAATCAGACGATGAGAGTGCGGAGATGACGCGTACAACGA
GGGATGGACACAAAGCCTCTGACATGTGGAAGGCTTACAATATGACCGGG
AAAAAGTCGACGAAGCAGAAGAAGAAAATGGAGAGAATCATAAACAGAGC
AACTCGACTAAAGAGTTCAGTGAATTGTAGAGCAATATCGGAGAAAAATC
CTGGACATCCGCAACTGGAAGCCATGATGCTCATCAATGACCCGCAAGAG
TTCGCAGAACGGCTTTTCAAAGATCTTCAGACGAGAAGGAAAAAGGAGAC
TTATGAGAACCGCCTTATCTTTATTAACTTGATATCTCGACTCGTTGGCA
CTCATGAACTTATTCTGTTTACCTTTTACCCTTTCTTGCAGAGATACCTG
CAACCTGCTCAACCAGAAGTAACACGGGTTCTCGCTTATTTAACTCAAGC
ATGTCACGAGAAAGTTCCTGCCGACGTGCTTCATCCTATCCTAAGGGGTC
TTGCGGATACGTTTGTTTCTGAGCGAAGTTCACCTCCCTCTGTAGCTGCT
GGTATAAACACGATTCGGGCCATTTGTTCTCGTGTTCCGCTCGCTATATT
GGACGAAGAGAATGAGTGCAAACCTGAACCGGAACAGGAAGCGGCATTGT
TGGAAGATCTGGTACAGTACAAGACGAGCAAGGACAAAGGCATTATGATG
GCGGCTAGATCCTTGATTGCTCTGTACAGAGAAGTGCATCCTGGTTTACT
GCAAAAGAGGGACAGGGGTCGTGCCGGGGCTCAAGCCGTGCAGAAGGGAG
AGGCCGTGCATGCTAGAGCATATGGGGAGCATAGGTACGCTACGGGAGTA
GAAGGAATTGAACTTTTGAACGCCGCAGATTCTGACGAAGACGAAGGGGG
CGAATCTGATGGGGAAATTGATGCTGGTATTGATGCGGGAGATGATAACG
TGAAAAACAATGCGAAAAACGCCGCTGAAGATGGTGATGAGGGTGGTGCT
GATAAGGACGAAAACCAACAGGTGAATACTGATGAAGAGTGTGAAGCCGA
TAGTGACGATGAAGAAAATGAAGGCGAAGAAGAGACAACAGAAGAGATAA
ATGTTGAAGGCGATGATGGTGATGGAATCGGCGACACGAAACGGTTGGAC
ACCATGCAGGTTCTCTCAAACGAGGACTTTGAGAAGATCCGCGTTCGACG
TGCTGCCAAGGCGCTTGGGCAAAGCGTGAGAGAGCTTAATACAGGGAGAG
TAGTGGATCCAGATGAAATTCAGGGACCCGTAAGACGGGAACGTCTCACG
CACGAGGAACGCATGGAGAGCATTTTGAAAGGAAGGGAAGGACGGGAAAA
ATTCGGAAGAAAGAACGGTAAAGGCGGCGGTACAAGTAACAAACAAAAAC
TGAAGAAGAAGTCCAATGCAATGGTGATACATAAACGAAGAAAACGAAAC
AAGCAAATGTCTCGAAGAGATAAACAGATTGCGAAGCGAAGGAAGAGAGA
CTACCGGTGA

Coding sequence (CDS) from alignment at NODE_237_length_34827_cov_4.750864:28547..30706+

>Gcaud3548.t1 ID=Gcaud3548.t1|Name=Gcaud3548.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2160bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:28547..30706+ (Gracilaria caudata M_176_S67 male)
ATGATTCTTCAGGAAAGATGTCGGAAGGACCCGCTTTCCTACAGAGATGA
TTTTCTAACCCAACGCCGTCATTTTGATGCTCTTCTGTCCGCAGCCAATT
TAAATCCATCTGGTCCCAATCCCCGCCTTGCGGAGGTTGCCTCGTTCATG
AGCGCTGTTGCACACTGCTACGGTTCTGAGGGGAACAGAATAGCCACTGA
AATAACCACCTTTCTTGGCGAATATGGTCAAGCTATGAATCCAGACTTGC
GACGTTCGCTTGTTCGACTGTTATGCCTCCTACGAGCGAGAGGCGCTGCA
GACCCCACCGCAGTCATTCCATTATTTTTTCGCCTTCTGTCGTGCAGTGA
TAAAGTGTTACGACGAATGGTTCACGGACACATCGTATCAGATATCAAGA
AGATTCAGAACAGTGGCCATTCCAGTCGTAAGCAGTTGCAAACTTTTTTG
TTTTCAATGGTGCAAGACCCCAGTGAAGTTCTGGTTAAGCGAAGTTTACA
CGTGCTGGTGGATTTGTTCCGAAAGCGAATATGGAATGATGCTAAATGTG
CCAATATGATCGCAACTGCATGTTTCCATCAAGCCATTTCTGTATCTACC
ATTGCGTCGAGATTTATGCTCAACTCGGAAAGCAAGGAACATAGCCAAGA
TTCCGACGATGAATCAGACGATGAGAGTGCGGAGATGACGCGTACAACGA
GGGATGGACACAAAGCCTCTGACATGTGGAAGGCTTACAATATGACCGGG
AAAAAGTCGACGAAGCAGAAGAAGAAAATGGAGAGAATCATAAACAGAGC
AACTCGACTAAAGAGTTCAGTGAATTGTAGAGCAATATCGGAGAAAAATC
CTGGACATCCGCAACTGGAAGCCATGATGCTCATCAATGACCCGCAAGAG
TTCGCAGAACGGCTTTTCAAAGATCTTCAGACGAGAAGGAAAAAGGAGAC
TTATGAGAACCGCCTTATCTTTATTAACTTGATATCTCGACTCGTTGGCA
CTCATGAACTTATTCTGTTTACCTTTTACCCTTTCTTGCAGAGATACCTG
CAACCTGCTCAACCAGAAGTAACACGGGTTCTCGCTTATTTAACTCAAGC
ATGTCACGAGAAAGTTCCTGCCGACGTGCTTCATCCTATCCTAAGGGGTC
TTGCGGATACGTTTGTTTCTGAGCGAAGTTCACCTCCCTCTGTAGCTGCT
GGTATAAACACGATTCGGGCCATTTGTTCTCGTGTTCCGCTCGCTATATT
GGACGAAGAGAATGAGTGCAAACCTGAACCGGAACAGGAAGCGGCATTGT
TGGAAGATCTGGTACAGTACAAGACGAGCAAGGACAAAGGCATTATGATG
GCGGCTAGATCCTTGATTGCTCTGTACAGAGAAGTGCATCCTGGTTTACT
GCAAAAGAGGGACAGGGGTCGTGCCGGGGCTCAAGCCGTGCAGAAGGGAG
AGGCCGTGCATGCTAGAGCATATGGGGAGCATAGGTACGCTACGGGAGTA
GAAGGAATTGAACTTTTGAACGCCGCAGATTCTGACGAAGACGAAGGGGG
CGAATCTGATGGGGAAATTGATGCTGGTATTGATGCGGGAGATGATAACG
TGAAAAACAATGCGAAAAACGCCGCTGAAGATGGTGATGAGGGTGGTGCT
GATAAGGACGAAAACCAACAGGTGAATACTGATGAAGAGTGTGAAGCCGA
TAGTGACGATGAAGAAAATGAAGGCGAAGAAGAGACAACAGAAGAGATAA
ATGTTGAAGGCGATGATGGTGATGGAATCGGCGACACGAAACGGTTGGAC
ACCATGCAGGTTCTCTCAAACGAGGACTTTGAGAAGATCCGCGTTCGACG
TGCTGCCAAGGCGCTTGGGCAAAGCGTGAGAGAGCTTAATACAGGGAGAG
TAGTGGATCCAGATGAAATTCAGGGACCCGTAAGACGGGAACGTCTCACG
CACGAGGAACGCATGGAGAGCATTTTGAAAGGAAGGGAAGGACGGGAAAA
ATTCGGAAGAAAGAACGGTAAAGGCGGCGGTACAAGTAACAAACAAAAAC
TGAAGAAGAAGTCCAATGCAATGGTGATACATAAACGAAGAAAACGAAAC
AAGCAAATGTCTCGAAGAGATAAACAGATTGCGAAGCGAAGGAAGAGAGA
CTACCGGTGA