Gcaud3542.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3542.t2
Unique Name	Gcaud3542.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	202

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_237_length_34827_cov_4.750864	contig	NODE_237_length_34827_cov_4.750864:19637..20343 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3542	Gcaud3542	Gracilaria caudata M_176_S67 male	gene	NODE_237_length_34827_cov_4.750864 19637..20343 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3542.t2	Gcaud3542.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_237_length_34827_cov_4.750864 19637..20343 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3542.t2.stop1	Gcaud3542.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_237_length_34827_cov_4.750864 19637..19639 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3542.t2.CDS1	Gcaud3542.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_237_length_34827_cov_4.750864 19637..20232 -
Gcaud3542.t2.CDS2	Gcaud3542.t2.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_237_length_34827_cov_4.750864 20334..20343 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3542.t2.exon1	Gcaud3542.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_237_length_34827_cov_4.750864 19637..20232 -
Gcaud3542.t2.exon2	Gcaud3542.t2.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_237_length_34827_cov_4.750864 20334..20343 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3542.t2.intron1	Gcaud3542.t2.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_237_length_34827_cov_4.750864 20233..20333 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3542.t2.start1	Gcaud3542.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_237_length_34827_cov_4.750864 20341..20343 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_237_length_34827_cov_4.750864:19637..20343-
coding sequence from alignment at NODE_237_length_34827_cov_4.750864:19637..20343-

mRNA sequence

>Gcaud3542.t2 ID=Gcaud3542.t2|Name=Gcaud3542.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=202bp
MADAPGSTSGLRELLNKFEGVRPPSPPKKERIVSGLDPKRGPLSKEAASA
REASQNRLSSRSAEAEQAARPKRYVPHIAATDSDEVRDLKRAILAKEQEI
TGVCTQLKAIADRIDRALEIFLASEIESEEQNATEKKPDQRVKAFTVDAA
KAVEGVVEKPKKQTVGSSPTSLEAILAAARSGQPRASGEKPKYSKLLRDM
K*

spliced messenger RNA

>Gcaud3542.t2 ID=Gcaud3542.t2|Name=Gcaud3542.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=606bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:19637..20343- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGACGCACCAGGATCCACATCTGGCTTACGCGAGTTGCTCAACAA
GTTCGAAGGAGTACGTCCTCCATCTCCGCCAAAGAAAGAACGTATCGTAA
GTGGACTAGATCCTAAGCGCGGTCCATTATCAAAAGAAGCCGCCTCAGCC
CGCGAAGCGAGCCAGAATAGACTATCATCCCGGTCTGCCGAAGCCGAACA
AGCAGCCCGTCCAAAGAGATATGTCCCACACATAGCAGCAACAGACTCCG
ATGAAGTGCGCGACTTGAAGCGAGCCATTCTGGCGAAGGAACAGGAAATA
ACTGGTGTTTGCACCCAGCTCAAAGCCATAGCTGATAGAATCGACCGAGC
GCTTGAGATCTTTCTTGCTTCTGAAATTGAAAGCGAAGAACAGAACGCCA
CTGAAAAGAAACCAGATCAACGAGTGAAAGCGTTTACAGTCGATGCAGCA
AAAGCTGTGGAAGGTGTCGTTGAGAAGCCGAAGAAACAAACAGTGGGCTC
TTCTCCGACATCACTGGAGGCCATTCTAGCGGCTGCCAGAAGTGGTCAGC
CTCGTGCGAGCGGCGAAAAGCCCAAATACTCCAAACTTCTACGTGATATG
AAGTAG

protein sequence of Gcaud3542.t2

>Gcaud3542.t2 ID=Gcaud3542.t2|Name=Gcaud3542.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=202bp
MADAPGSTSGLRELLNKFEGVRPPSPPKKERIVSGLDPKRGPLSKEAASA
REASQNRLSSRSAEAEQAARPKRYVPHIAATDSDEVRDLKRAILAKEQEI
TGVCTQLKAIADRIDRALEIFLASEIESEEQNATEKKPDQRVKAFTVDAA
KAVEGVVEKPKKQTVGSSPTSLEAILAAARSGQPRASGEKPKYSKLLRDM
K*

mRNA from alignment at NODE_237_length_34827_cov_4.750864:19637..20343-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3542.t2 ID=Gcaud3542.t2|Name=Gcaud3542.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=707bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:19637..20343- (Gracilaria caudata M_176_S67 male)
ATGGCGGACGGTACGTTAATTCGAGCGCCGCCTAGTCACATGTGCATTTG
AAGTTATGAATCTGATGGCTACTAACTTAAAGTGTTCACTATGTATTACC
ATCCATGAAAGCACCAGGATCCACATCTGGCTTACGCGAGTTGCTCAACA
AGTTCGAAGGAGTACGTCCTCCATCTCCGCCAAAGAAAGAACGTATCGTA
AGTGGACTAGATCCTAAGCGCGGTCCATTATCAAAAGAAGCCGCCTCAGC
CCGCGAAGCGAGCCAGAATAGACTATCATCCCGGTCTGCCGAAGCCGAAC
AAGCAGCCCGTCCAAAGAGATATGTCCCACACATAGCAGCAACAGACTCC
GATGAAGTGCGCGACTTGAAGCGAGCCATTCTGGCGAAGGAACAGGAAAT
AACTGGTGTTTGCACCCAGCTCAAAGCCATAGCTGATAGAATCGACCGAG
CGCTTGAGATCTTTCTTGCTTCTGAAATTGAAAGCGAAGAACAGAACGCC
ACTGAAAAGAAACCAGATCAACGAGTGAAAGCGTTTACAGTCGATGCAGC
AAAAGCTGTGGAAGGTGTCGTTGAGAAGCCGAAGAAACAAACAGTGGGCT
CTTCTCCGACATCACTGGAGGCCATTCTAGCGGCTGCCAGAAGTGGTCAG
CCTCGTGCGAGCGGCGAAAAGCCCAAATACTCCAAACTTCTACGTGATAT
GAAGTAG

Coding sequence (CDS) from alignment at NODE_237_length_34827_cov_4.750864:19637..20343-

>Gcaud3542.t2 ID=Gcaud3542.t2|Name=Gcaud3542.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=606bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:19637..20343- (Gracilaria caudata M_176_S67 male)
ATGGCGGACGCACCAGGATCCACATCTGGCTTACGCGAGTTGCTCAACAA
GTTCGAAGGAGTACGTCCTCCATCTCCGCCAAAGAAAGAACGTATCGTAA
GTGGACTAGATCCTAAGCGCGGTCCATTATCAAAAGAAGCCGCCTCAGCC
CGCGAAGCGAGCCAGAATAGACTATCATCCCGGTCTGCCGAAGCCGAACA
AGCAGCCCGTCCAAAGAGATATGTCCCACACATAGCAGCAACAGACTCCG
ATGAAGTGCGCGACTTGAAGCGAGCCATTCTGGCGAAGGAACAGGAAATA
ACTGGTGTTTGCACCCAGCTCAAAGCCATAGCTGATAGAATCGACCGAGC
GCTTGAGATCTTTCTTGCTTCTGAAATTGAAAGCGAAGAACAGAACGCCA
CTGAAAAGAAACCAGATCAACGAGTGAAAGCGTTTACAGTCGATGCAGCA
AAAGCTGTGGAAGGTGTCGTTGAGAAGCCGAAGAAACAAACAGTGGGCTC
TTCTCCGACATCACTGGAGGCCATTCTAGCGGCTGCCAGAAGTGGTCAGC
CTCGTGCGAGCGGCGAAAAGCCCAAATACTCCAAACTTCTACGTGATATG
AAGTAG