Gcaud354.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud354.t1
Unique NameGcaud354.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_9182_length_652_cov_9.652406contigNODE_9182_length_652_cov_9.652406:8..652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud354Gcaud354Gracilaria caudata M_176_S67 malegeneNODE_9182_length_652_cov_9.652406 8..652 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud354.t1.start1Gcaud354.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_9182_length_652_cov_9.652406 8..10 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud354.t1.CDS1Gcaud354.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_9182_length_652_cov_9.652406 8..652 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud354.t1.exon1Gcaud354.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_9182_length_652_cov_9.652406 8..652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud354.t1Gcaud354.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_9182_length_652_cov_9.652406 8..652 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud354.t1 ID=Gcaud354.t1|Name=Gcaud354.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=215bp
MFGRSNNYEGAVESVAFKIITLRPEYSQVEGISQTKSSYLASCVEETLKA
NADQSSLVKYLQPMALKTRSLQVEGQVRADLTTNSSERMQDIRERVNQGF
TDLEITENVTDQISSIVASVVLDFPIASLQLLWQNAVSSSNTQDVFLLSV
AISQVRGEGLQQLHDQMQGILFLWEEWPTDLLGLEKALLVLHEVTTAVLR
SITGNMMVLFNVFTT
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spliced messenger RNA

>Gcaud354.t1 ID=Gcaud354.t1|Name=Gcaud354.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=645bp|location=Sequence derived from alignment at NODE_9182_length_652_cov_9.652406:8..652+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGGGCGTTCAAATAACTACGAAGGTGCAGTGGAAAGCGTAGCCTT
CAAGATCATTACTCTTCGACCCGAATACTCTCAAGTCGAAGGCATTTCCC
AAACAAAGAGTAGTTATTTGGCTTCTTGCGTGGAAGAAACATTGAAGGCG
AATGCTGATCAAAGCTCATTGGTCAAGTATCTTCAGCCAATGGCATTGAA
AACTCGCAGTTTACAAGTAGAAGGTCAAGTGAGGGCTGATCTTACGACAA
ACTCATCGGAACGTATGCAGGACATTCGCGAAAGAGTGAATCAAGGTTTC
ACAGACTTGGAGATAACTGAGAATGTGACAGACCAGATATCCAGCATTGT
GGCTTCTGTCGTTTTGGACTTTCCAATCGCTAGTCTGCAGTTGTTGTGGC
AAAATGCAGTCTCCAGCTCCAATACTCAAGACGTTTTCTTGCTATCAGTT
GCCATATCTCAAGTGAGAGGCGAAGGCCTACAACAATTACACGATCAGAT
GCAGGGAATTCTGTTTCTGTGGGAAGAATGGCCAACGGATCTTCTGGGGC
TAGAAAAGGCGCTCTTGGTCTTGCATGAAGTCACAACCGCTGTCCTTAGG
TCCATCACCGGTAACATGATGGTATTGTTCAACGTCTTCACAACG
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protein sequence of Gcaud354.t1

>Gcaud354.t1 ID=Gcaud354.t1|Name=Gcaud354.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=215bp
MFGRSNNYEGAVESVAFKIITLRPEYSQVEGISQTKSSYLASCVEETLKA
NADQSSLVKYLQPMALKTRSLQVEGQVRADLTTNSSERMQDIRERVNQGF
TDLEITENVTDQISSIVASVVLDFPIASLQLLWQNAVSSSNTQDVFLLSV
AISQVRGEGLQQLHDQMQGILFLWEEWPTDLLGLEKALLVLHEVTTAVLR
SITGNMMVLFNVFTT
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mRNA from alignment at NODE_9182_length_652_cov_9.652406:8..652+

Legend: start_codonpolypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud354.t1 ID=Gcaud354.t1|Name=Gcaud354.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=645bp|location=Sequence derived from alignment at NODE_9182_length_652_cov_9.652406:8..652+ (Gracilaria caudata M_176_S67 male)
ATGTTCGGGCGTTCAAATAACTACGAAGGTGCAGTGGAAAGCGTAGCCTT
CAAGATCATTACTCTTCGACCCGAATACTCTCAAGTCGAAGGCATTTCCC
AAACAAAGAGTAGTTATTTGGCTTCTTGCGTGGAAGAAACATTGAAGGCG
AATGCTGATCAAAGCTCATTGGTCAAGTATCTTCAGCCAATGGCATTGAA
AACTCGCAGTTTACAAGTAGAAGGTCAAGTGAGGGCTGATCTTACGACAA
ACTCATCGGAACGTATGCAGGACATTCGCGAAAGAGTGAATCAAGGTTTC
ACAGACTTGGAGATAACTGAGAATGTGACAGACCAGATATCCAGCATTGT
GGCTTCTGTCGTTTTGGACTTTCCAATCGCTAGTCTGCAGTTGTTGTGGC
AAAATGCAGTCTCCAGCTCCAATACTCAAGACGTTTTCTTGCTATCAGTT
GCCATATCTCAAGTGAGAGGCGAAGGCCTACAACAATTACACGATCAGAT
GCAGGGAATTCTGTTTCTGTGGGAAGAATGGCCAACGGATCTTCTGGGGC
TAGAAAAGGCGCTCTTGGTCTTGCATGAAGTCACAACCGCTGTCCTTAGG
TCCATCACCGGTAACATGATGGTATTGTTCAACGTCTTCACAACG
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Coding sequence (CDS) from alignment at NODE_9182_length_652_cov_9.652406:8..652+

>Gcaud354.t1 ID=Gcaud354.t1|Name=Gcaud354.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=645bp|location=Sequence derived from alignment at NODE_9182_length_652_cov_9.652406:8..652+ (Gracilaria caudata M_176_S67 male)
ATGTTCGGGCGTTCAAATAACTACGAAGGTGCAGTGGAAAGCGTAGCCTT
CAAGATCATTACTCTTCGACCCGAATACTCTCAAGTCGAAGGCATTTCCC
AAACAAAGAGTAGTTATTTGGCTTCTTGCGTGGAAGAAACATTGAAGGCG
AATGCTGATCAAAGCTCATTGGTCAAGTATCTTCAGCCAATGGCATTGAA
AACTCGCAGTTTACAAGTAGAAGGTCAAGTGAGGGCTGATCTTACGACAA
ACTCATCGGAACGTATGCAGGACATTCGCGAAAGAGTGAATCAAGGTTTC
ACAGACTTGGAGATAACTGAGAATGTGACAGACCAGATATCCAGCATTGT
GGCTTCTGTCGTTTTGGACTTTCCAATCGCTAGTCTGCAGTTGTTGTGGC
AAAATGCAGTCTCCAGCTCCAATACTCAAGACGTTTTCTTGCTATCAGTT
GCCATATCTCAAGTGAGAGGCGAAGGCCTACAACAATTACACGATCAGAT
GCAGGGAATTCTGTTTCTGTGGGAAGAATGGCCAACGGATCTTCTGGGGC
TAGAAAAGGCGCTCTTGGTCTTGCATGAAGTCACAACCGCTGTCCTTAGG
TCCATCACCGGTAACATGATGGTATTGTTCAACGTCTTCACAACG
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