Gcaud3532.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3532.t1
Unique Name	Gcaud3532.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	428

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_25_length_75543_cov_4.432116	contig	NODE_25_length_75543_cov_4.432116:73211..74578 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3532	Gcaud3532	Gracilaria caudata M_176_S67 male	gene	NODE_25_length_75543_cov_4.432116 73211..74578 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3532.t1	Gcaud3532.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_25_length_75543_cov_4.432116 73211..74578 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3532.t1.stop1	Gcaud3532.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_25_length_75543_cov_4.432116 73211..73213 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3532.t1.CDS1	Gcaud3532.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_25_length_75543_cov_4.432116 73211..74470 -
Gcaud3532.t1.CDS2	Gcaud3532.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_25_length_75543_cov_4.432116 74555..74578 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3532.t1.exon1	Gcaud3532.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_25_length_75543_cov_4.432116 73211..74470 -
Gcaud3532.t1.exon2	Gcaud3532.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_25_length_75543_cov_4.432116 74555..74578 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3532.t1.intron1	Gcaud3532.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_25_length_75543_cov_4.432116 74471..74554 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3532.t1.start1	Gcaud3532.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_25_length_75543_cov_4.432116 74576..74578 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_25_length_75543_cov_4.432116:73211..74578-
coding sequence from alignment at NODE_25_length_75543_cov_4.432116:73211..74578-

mRNA sequence

>Gcaud3532.t1 ID=Gcaud3532.t1|Name=Gcaud3532.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=428bp
MTTSRDQTFIAFFTEPKEIEQKRNSEHGEVPEVFKTNEFHVTISGTTLAL
PNPWRPTKLRAQLYTQPPTAAEFVHRHTTETIEGESSPKFTKKATFGPLQ
MSNSQNEAKRTLVKVDIYLNDDLVFTTTFQLARLLWDKRIEELVQPVMPS
MVVIKNKKAAQGRLIVDVMQGRPPSVTRLPFERHEVVLNFELCARVWGMI
SEQKVHMALCSVGFRGRWNRVYASENIKRPFLRNASTVFSPIHSSRGDLV
NSNPKNPIRIELYGYRKGYPKLLGYSHVTLTDLHKPRDITWNAGPSSTLF
AVLRVASSFASQTRSEVNFRLESCAVIGRGINANTGRERSTQLDQNPSAY
FNSGQCPPALRSVNFQHHSPQIGISGRADSTILTPRNFKVHFPATYRSVL
DEATNNGIDDDACRRTNGPRLVERLES*

spliced messenger RNA

>Gcaud3532.t1 ID=Gcaud3532.t1|Name=Gcaud3532.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:73211..74578- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGACTTCCAGAGATCAGACGTTTATCGCATTCTTTACTGAGCCAAA
AGAAATAGAACAGAAAAGAAACAGTGAACACGGGGAAGTGCCAGAGGTTT
TCAAGACAAACGAGTTTCATGTCACTATATCTGGTACAACCCTTGCACTG
CCAAATCCTTGGCGTCCTACGAAACTTCGCGCTCAGCTTTACACCCAGCC
ACCGACTGCGGCAGAATTTGTCCATCGACATACTACTGAAACTATAGAGG
GTGAGAGCAGCCCAAAATTCACAAAGAAGGCCACATTCGGGCCTTTGCAG
ATGAGCAATTCCCAAAACGAAGCCAAGAGAACGCTTGTGAAGGTGGATAT
ATACCTCAATGATGATTTGGTTTTCACAACAACGTTTCAGCTCGCAAGGC
TGCTCTGGGATAAACGCATCGAAGAGTTGGTGCAGCCAGTAATGCCCAGC
ATGGTTGTGATCAAGAACAAGAAGGCAGCTCAAGGGAGACTTATCGTGGA
TGTTATGCAAGGAAGGCCACCAAGTGTAACTCGCTTACCATTTGAAAGGC
ATGAGGTCGTATTAAACTTTGAGCTTTGTGCCAGGGTCTGGGGTATGATT
TCAGAACAGAAAGTTCATATGGCCTTATGCAGCGTCGGGTTTCGTGGTAG
GTGGAATCGGGTTTATGCCTCGGAAAACATTAAGAGACCGTTCTTGAGAA
ACGCCTCCACGGTCTTTTCACCGATCCACAGTTCGCGGGGTGATCTTGTC
AACAGCAATCCGAAAAATCCGATCCGTATTGAACTCTATGGGTATCGAAA
AGGATATCCTAAGCTCTTGGGCTATTCCCATGTGACGTTAACGGATTTGC
ACAAACCAAGGGACATTACATGGAACGCTGGACCTTCCTCGACTCTGTTT
GCGGTTTTGAGAGTTGCGAGTTCATTTGCATCCCAGACTCGCTCCGAAGT
GAACTTCCGCCTGGAATCCTGTGCTGTTATCGGAAGAGGGATCAATGCTA
ATACAGGAAGAGAGCGTTCCACGCAGCTAGACCAAAACCCATCAGCATAC
TTCAACTCGGGACAATGCCCCCCAGCTCTGCGGAGTGTCAACTTCCAACA
CCATTCACCTCAGATTGGGATAAGTGGGAGGGCGGATAGCACTATCCTCA
CCCCAAGAAATTTTAAGGTGCACTTTCCTGCGACATATAGATCTGTTCTG
GATGAAGCTACAAACAACGGCATCGATGACGACGCTTGCCGCCGTACTAA
TGGCCCCAGACTAGTCGAGAGGTTGGAGTCCTAA

protein sequence of Gcaud3532.t1

>Gcaud3532.t1 ID=Gcaud3532.t1|Name=Gcaud3532.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=428bp
MTTSRDQTFIAFFTEPKEIEQKRNSEHGEVPEVFKTNEFHVTISGTTLAL
PNPWRPTKLRAQLYTQPPTAAEFVHRHTTETIEGESSPKFTKKATFGPLQ
MSNSQNEAKRTLVKVDIYLNDDLVFTTTFQLARLLWDKRIEELVQPVMPS
MVVIKNKKAAQGRLIVDVMQGRPPSVTRLPFERHEVVLNFELCARVWGMI
SEQKVHMALCSVGFRGRWNRVYASENIKRPFLRNASTVFSPIHSSRGDLV
NSNPKNPIRIELYGYRKGYPKLLGYSHVTLTDLHKPRDITWNAGPSSTLF
AVLRVASSFASQTRSEVNFRLESCAVIGRGINANTGRERSTQLDQNPSAY
FNSGQCPPALRSVNFQHHSPQIGISGRADSTILTPRNFKVHFPATYRSVL
DEATNNGIDDDACRRTNGPRLVERLES*

mRNA from alignment at NODE_25_length_75543_cov_4.432116:73211..74578-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3532.t1 ID=Gcaud3532.t1|Name=Gcaud3532.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:73211..74578- (Gracilaria caudata M_176_S67 male)
ATGACGACTTCCAGAGATCAGACGGTAGGTTGTTCAACTTCTCCTTTTTC
GACTTAACCCTTTGAATAAGGTTAATTGGTACGATTCGCTAACCAGAGGA
TCTTTTAGTTTATCGCATTCTTTACTGAGCCAAAAGAAATAGAACAGAAA
AGAAACAGTGAACACGGGGAAGTGCCAGAGGTTTTCAAGACAAACGAGTT
TCATGTCACTATATCTGGTACAACCCTTGCACTGCCAAATCCTTGGCGTC
CTACGAAACTTCGCGCTCAGCTTTACACCCAGCCACCGACTGCGGCAGAA
TTTGTCCATCGACATACTACTGAAACTATAGAGGGTGAGAGCAGCCCAAA
ATTCACAAAGAAGGCCACATTCGGGCCTTTGCAGATGAGCAATTCCCAAA
ACGAAGCCAAGAGAACGCTTGTGAAGGTGGATATATACCTCAATGATGAT
TTGGTTTTCACAACAACGTTTCAGCTCGCAAGGCTGCTCTGGGATAAACG
CATCGAAGAGTTGGTGCAGCCAGTAATGCCCAGCATGGTTGTGATCAAGA
ACAAGAAGGCAGCTCAAGGGAGACTTATCGTGGATGTTATGCAAGGAAGG
CCACCAAGTGTAACTCGCTTACCATTTGAAAGGCATGAGGTCGTATTAAA
CTTTGAGCTTTGTGCCAGGGTCTGGGGTATGATTTCAGAACAGAAAGTTC
ATATGGCCTTATGCAGCGTCGGGTTTCGTGGTAGGTGGAATCGGGTTTAT
GCCTCGGAAAACATTAAGAGACCGTTCTTGAGAAACGCCTCCACGGTCTT
TTCACCGATCCACAGTTCGCGGGGTGATCTTGTCAACAGCAATCCGAAAA
ATCCGATCCGTATTGAACTCTATGGGTATCGAAAAGGATATCCTAAGCTC
TTGGGCTATTCCCATGTGACGTTAACGGATTTGCACAAACCAAGGGACAT
TACATGGAACGCTGGACCTTCCTCGACTCTGTTTGCGGTTTTGAGAGTTG
CGAGTTCATTTGCATCCCAGACTCGCTCCGAAGTGAACTTCCGCCTGGAA
TCCTGTGCTGTTATCGGAAGAGGGATCAATGCTAATACAGGAAGAGAGCG
TTCCACGCAGCTAGACCAAAACCCATCAGCATACTTCAACTCGGGACAAT
GCCCCCCAGCTCTGCGGAGTGTCAACTTCCAACACCATTCACCTCAGATT
GGGATAAGTGGGAGGGCGGATAGCACTATCCTCACCCCAAGAAATTTTAA
GGTGCACTTTCCTGCGACATATAGATCTGTTCTGGATGAAGCTACAAACA
ACGGCATCGATGACGACGCTTGCCGCCGTACTAATGGCCCCAGACTAGTC
GAGAGGTTGGAGTCCTAA

Coding sequence (CDS) from alignment at NODE_25_length_75543_cov_4.432116:73211..74578-

>Gcaud3532.t1 ID=Gcaud3532.t1|Name=Gcaud3532.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1284bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:73211..74578- (Gracilaria caudata M_176_S67 male)
ATGACGACTTCCAGAGATCAGACGTTTATCGCATTCTTTACTGAGCCAAA
AGAAATAGAACAGAAAAGAAACAGTGAACACGGGGAAGTGCCAGAGGTTT
TCAAGACAAACGAGTTTCATGTCACTATATCTGGTACAACCCTTGCACTG
CCAAATCCTTGGCGTCCTACGAAACTTCGCGCTCAGCTTTACACCCAGCC
ACCGACTGCGGCAGAATTTGTCCATCGACATACTACTGAAACTATAGAGG
GTGAGAGCAGCCCAAAATTCACAAAGAAGGCCACATTCGGGCCTTTGCAG
ATGAGCAATTCCCAAAACGAAGCCAAGAGAACGCTTGTGAAGGTGGATAT
ATACCTCAATGATGATTTGGTTTTCACAACAACGTTTCAGCTCGCAAGGC
TGCTCTGGGATAAACGCATCGAAGAGTTGGTGCAGCCAGTAATGCCCAGC
ATGGTTGTGATCAAGAACAAGAAGGCAGCTCAAGGGAGACTTATCGTGGA
TGTTATGCAAGGAAGGCCACCAAGTGTAACTCGCTTACCATTTGAAAGGC
ATGAGGTCGTATTAAACTTTGAGCTTTGTGCCAGGGTCTGGGGTATGATT
TCAGAACAGAAAGTTCATATGGCCTTATGCAGCGTCGGGTTTCGTGGTAG
GTGGAATCGGGTTTATGCCTCGGAAAACATTAAGAGACCGTTCTTGAGAA
ACGCCTCCACGGTCTTTTCACCGATCCACAGTTCGCGGGGTGATCTTGTC
AACAGCAATCCGAAAAATCCGATCCGTATTGAACTCTATGGGTATCGAAA
AGGATATCCTAAGCTCTTGGGCTATTCCCATGTGACGTTAACGGATTTGC
ACAAACCAAGGGACATTACATGGAACGCTGGACCTTCCTCGACTCTGTTT
GCGGTTTTGAGAGTTGCGAGTTCATTTGCATCCCAGACTCGCTCCGAAGT
GAACTTCCGCCTGGAATCCTGTGCTGTTATCGGAAGAGGGATCAATGCTA
ATACAGGAAGAGAGCGTTCCACGCAGCTAGACCAAAACCCATCAGCATAC
TTCAACTCGGGACAATGCCCCCCAGCTCTGCGGAGTGTCAACTTCCAACA
CCATTCACCTCAGATTGGGATAAGTGGGAGGGCGGATAGCACTATCCTCA
CCCCAAGAAATTTTAAGGTGCACTTTCCTGCGACATATAGATCTGTTCTG
GATGAAGCTACAAACAACGGCATCGATGACGACGCTTGCCGCCGTACTAA
TGGCCCCAGACTAGTCGAGAGGTTGGAGTCCTAA