Gcaud3520.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3520.t1
Unique NameGcaud3520.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length414
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_25_length_75543_cov_4.432116contigNODE_25_length_75543_cov_4.432116:42897..44138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707946.1
Preferred nameFBP1
PFAMsFBPase
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K03841
KEGG ReactionR00762,R04780
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910
KEGG ModuleM00003,M00165,M00167,M00344
GOsGO:0000122,GO:0000166,GO:0000988,GO:0000989,GO:0001076,GO:0001191,GO:0001558,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0005984,GO:0005985,GO:0005986,GO:0005996,GO:0006000,GO:0006002,GO:0006006,GO:0006094,GO:0006109,GO:0006110,GO:0006111,GO:0006140,GO:0006355,GO:0006357,GO:0006793,GO:0006796,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010468,GO:0010556,GO:0010558,GO:0010563,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010675,GO:0010677,GO:0010906,GO:0016020,GO:0016043,GO:0016051,GO:0016208,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0019203,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019637,GO:0022607,GO:0023051,GO:0023057,GO:0030016,GO:0030017,GO:0030018,GO:0030054,GO:0030246,GO:0030308,GO:0030388,GO:0030554,GO:0030808,GO:0030809,GO:0030811,GO:0030812,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031329,GO:0031330,GO:0031674,GO:0031974,GO:0031981,GO:0032026,GO:0032553,GO:0032555,GO:0032559,GO:0032868,GO:0032869,GO:0032870,GO:0034637,GO:0035690,GO:0036094,GO:0040008,GO:0042132,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042578,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043292,GO:0043434,GO:0043467,GO:0043470,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0045820,GO:0045892,GO:0045912,GO:0045926,GO:0045934,GO:0045936,GO:0045980,GO:0046351,GO:0046364,GO:0046578,GO:0046580,GO:0046872,GO:0048029,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050308,GO:0050789,GO:0050794,GO:0050896,GO:0051056,GO:0051058,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051193,GO:0051195,GO:0051196,GO:0051198,GO:0051252,GO:0051253,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051716,GO:0060255,GO:0062012,GO:0062014,GO:0065003,GO:0065007,GO:0070013,GO:0070887,GO:0071241,GO:0071248,GO:0071286,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:0097367,GO:0099080,GO:0099081,GO:0099512,GO:0140110,GO:1900371,GO:1900372,GO:1900542,GO:1900543,GO:1901135,GO:1901265,GO:1901363,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902531,GO:1902532,GO:1902679,GO:1903506,GO:1903507,GO:1903578,GO:1903579,GO:2000112,GO:2000113,GO:2001141,GO:2001169,GO:2001170
Evalue7.23e-177
EggNOG OGsCOG0158@1|root,KOG1458@2759|Eukaryota
EC3.1.3.11
Descriptionfructose 1,6-bisphosphate 1-phosphatase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3520Gcaud3520Gracilaria caudata M_176_S67 malegeneNODE_25_length_75543_cov_4.432116 42897..44138 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3520.t1.start1Gcaud3520.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_25_length_75543_cov_4.432116 42897..42899 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3520.t1.CDS1Gcaud3520.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_25_length_75543_cov_4.432116 42897..44138 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3520.t1.exon1Gcaud3520.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_25_length_75543_cov_4.432116 42897..44138 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3520.t1.stop1Gcaud3520.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_25_length_75543_cov_4.432116 44136..44138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3520.t1Gcaud3520.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_25_length_75543_cov_4.432116 42897..44138 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3520.t1 ID=Gcaud3520.t1|Name=Gcaud3520.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=414bp
MRCRCPTQRCDCAVASVHPPTPKRRSDCNPDSEPPSKRLRLHSYPSSTRS
SLSAMQQLVHDQLNSGLKPPTGLEGLDSVTLTRFVLQGQRKHHEASGDLT
LLLAAVQLACKVTETCVRRAGIAKLYGLAGSGNVQGEDQKKLDVIANDTF
KVNINSSEKCGVMVSEEDDLAIVCQKSSIDGSTGKYAIAFDPLDGSSNID
ANVSIGTIFSIFKLNDPDSVVDAETAARAIMQPGREMVAAGYAMYGSATN
LVISVGTGVHGFTLDPSLGEFVLTHPDIKIPARGKIYSVNEGNAKNWDKP
TSEYVQSLKYPEEGKSSYSLRYIGSMVADVHRTLFYGGVFIYPADKKSPT
GKLRLLYEAAPMAFLMEQAGGKATTGKQPILDVIPSSIHQRVPVYMGSAD
DVSDFEALAAKYL*
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spliced messenger RNA

>Gcaud3520.t1 ID=Gcaud3520.t1|Name=Gcaud3520.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:42897..44138+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTGCCGCTGCCCTACACAGCGTTGCGACTGTGCAGTGGCTTCTGT
GCACCCTCCAACTCCCAAGCGCCGTTCCGACTGCAACCCGGACAGTGAAC
CTCCTTCGAAGCGATTACGACTTCACTCTTATCCGTCGTCCACGCGTTCG
AGTCTCTCCGCCATGCAGCAGTTAGTTCATGATCAGTTGAACTCAGGCCT
CAAGCCGCCGACCGGTCTGGAAGGCCTCGACTCCGTGACGCTCACGCGCT
TTGTGTTACAAGGACAGCGGAAGCATCATGAAGCTTCTGGTGATCTCACT
CTGCTGCTGGCGGCCGTCCAGCTTGCGTGCAAGGTTACCGAGACGTGTGT
ACGTCGCGCTGGAATCGCCAAGCTCTACGGTTTAGCTGGGTCCGGCAATG
TCCAAGGCGAAGATCAGAAGAAGCTTGATGTCATCGCAAACGACACTTTC
AAGGTGAATATCAACAGCTCGGAGAAGTGTGGTGTCATGGTCTCCGAGGA
GGATGACCTTGCCATCGTTTGCCAGAAGAGCAGCATCGACGGTTCGACCG
GAAAATACGCCATCGCTTTCGATCCATTAGACGGAAGCTCCAATATCGAT
GCGAACGTATCTATTGGTACCATTTTCAGCATCTTCAAGCTGAATGACCC
AGATTCAGTAGTAGACGCGGAGACTGCTGCACGAGCCATCATGCAGCCGG
GTCGCGAGATGGTAGCGGCTGGCTATGCCATGTATGGGTCGGCCACCAAT
CTGGTGATTTCCGTCGGAACCGGTGTGCATGGCTTCACGCTTGACCCGTC
ACTAGGTGAGTTCGTCCTCACACATCCTGACATCAAGATTCCCGCTCGTG
GTAAGATTTACTCAGTGAACGAGGGCAATGCGAAGAACTGGGATAAGCCC
ACTTCAGAATACGTTCAGAGCCTCAAATATCCCGAGGAGGGTAAGTCTAG
CTATTCTTTGCGTTACATTGGCTCCATGGTTGCGGACGTACACCGCACTC
TGTTCTACGGAGGCGTCTTCATCTACCCTGCCGACAAGAAGTCGCCGACT
GGCAAGCTTCGTCTTTTGTACGAGGCTGCACCCATGGCTTTCTTGATGGA
GCAAGCTGGTGGAAAAGCTACCACAGGAAAGCAACCCATTCTGGACGTCA
TTCCATCTTCAATTCATCAGCGGGTGCCTGTGTACATGGGCTCTGCTGAC
GATGTTTCTGATTTCGAGGCCTTAGCTGCCAAATACCTGTAA
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protein sequence of Gcaud3520.t1

>Gcaud3520.t1 ID=Gcaud3520.t1|Name=Gcaud3520.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=414bp
MRCRCPTQRCDCAVASVHPPTPKRRSDCNPDSEPPSKRLRLHSYPSSTRS
SLSAMQQLVHDQLNSGLKPPTGLEGLDSVTLTRFVLQGQRKHHEASGDLT
LLLAAVQLACKVTETCVRRAGIAKLYGLAGSGNVQGEDQKKLDVIANDTF
KVNINSSEKCGVMVSEEDDLAIVCQKSSIDGSTGKYAIAFDPLDGSSNID
ANVSIGTIFSIFKLNDPDSVVDAETAARAIMQPGREMVAAGYAMYGSATN
LVISVGTGVHGFTLDPSLGEFVLTHPDIKIPARGKIYSVNEGNAKNWDKP
TSEYVQSLKYPEEGKSSYSLRYIGSMVADVHRTLFYGGVFIYPADKKSPT
GKLRLLYEAAPMAFLMEQAGGKATTGKQPILDVIPSSIHQRVPVYMGSAD
DVSDFEALAAKYL*
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mRNA from alignment at NODE_25_length_75543_cov_4.432116:42897..44138+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3520.t1 ID=Gcaud3520.t1|Name=Gcaud3520.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:42897..44138+ (Gracilaria caudata M_176_S67 male)
ATGCGCTGCCGCTGCCCTACACAGCGTTGCGACTGTGCAGTGGCTTCTGT
GCACCCTCCAACTCCCAAGCGCCGTTCCGACTGCAACCCGGACAGTGAAC
CTCCTTCGAAGCGATTACGACTTCACTCTTATCCGTCGTCCACGCGTTCG
AGTCTCTCCGCCATGCAGCAGTTAGTTCATGATCAGTTGAACTCAGGCCT
CAAGCCGCCGACCGGTCTGGAAGGCCTCGACTCCGTGACGCTCACGCGCT
TTGTGTTACAAGGACAGCGGAAGCATCATGAAGCTTCTGGTGATCTCACT
CTGCTGCTGGCGGCCGTCCAGCTTGCGTGCAAGGTTACCGAGACGTGTGT
ACGTCGCGCTGGAATCGCCAAGCTCTACGGTTTAGCTGGGTCCGGCAATG
TCCAAGGCGAAGATCAGAAGAAGCTTGATGTCATCGCAAACGACACTTTC
AAGGTGAATATCAACAGCTCGGAGAAGTGTGGTGTCATGGTCTCCGAGGA
GGATGACCTTGCCATCGTTTGCCAGAAGAGCAGCATCGACGGTTCGACCG
GAAAATACGCCATCGCTTTCGATCCATTAGACGGAAGCTCCAATATCGAT
GCGAACGTATCTATTGGTACCATTTTCAGCATCTTCAAGCTGAATGACCC
AGATTCAGTAGTAGACGCGGAGACTGCTGCACGAGCCATCATGCAGCCGG
GTCGCGAGATGGTAGCGGCTGGCTATGCCATGTATGGGTCGGCCACCAAT
CTGGTGATTTCCGTCGGAACCGGTGTGCATGGCTTCACGCTTGACCCGTC
ACTAGGTGAGTTCGTCCTCACACATCCTGACATCAAGATTCCCGCTCGTG
GTAAGATTTACTCAGTGAACGAGGGCAATGCGAAGAACTGGGATAAGCCC
ACTTCAGAATACGTTCAGAGCCTCAAATATCCCGAGGAGGGTAAGTCTAG
CTATTCTTTGCGTTACATTGGCTCCATGGTTGCGGACGTACACCGCACTC
TGTTCTACGGAGGCGTCTTCATCTACCCTGCCGACAAGAAGTCGCCGACT
GGCAAGCTTCGTCTTTTGTACGAGGCTGCACCCATGGCTTTCTTGATGGA
GCAAGCTGGTGGAAAAGCTACCACAGGAAAGCAACCCATTCTGGACGTCA
TTCCATCTTCAATTCATCAGCGGGTGCCTGTGTACATGGGCTCTGCTGAC
GATGTTTCTGATTTCGAGGCCTTAGCTGCCAAATACCTGTAA
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Coding sequence (CDS) from alignment at NODE_25_length_75543_cov_4.432116:42897..44138+

>Gcaud3520.t1 ID=Gcaud3520.t1|Name=Gcaud3520.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1242bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:42897..44138+ (Gracilaria caudata M_176_S67 male)
ATGCGCTGCCGCTGCCCTACACAGCGTTGCGACTGTGCAGTGGCTTCTGT
GCACCCTCCAACTCCCAAGCGCCGTTCCGACTGCAACCCGGACAGTGAAC
CTCCTTCGAAGCGATTACGACTTCACTCTTATCCGTCGTCCACGCGTTCG
AGTCTCTCCGCCATGCAGCAGTTAGTTCATGATCAGTTGAACTCAGGCCT
CAAGCCGCCGACCGGTCTGGAAGGCCTCGACTCCGTGACGCTCACGCGCT
TTGTGTTACAAGGACAGCGGAAGCATCATGAAGCTTCTGGTGATCTCACT
CTGCTGCTGGCGGCCGTCCAGCTTGCGTGCAAGGTTACCGAGACGTGTGT
ACGTCGCGCTGGAATCGCCAAGCTCTACGGTTTAGCTGGGTCCGGCAATG
TCCAAGGCGAAGATCAGAAGAAGCTTGATGTCATCGCAAACGACACTTTC
AAGGTGAATATCAACAGCTCGGAGAAGTGTGGTGTCATGGTCTCCGAGGA
GGATGACCTTGCCATCGTTTGCCAGAAGAGCAGCATCGACGGTTCGACCG
GAAAATACGCCATCGCTTTCGATCCATTAGACGGAAGCTCCAATATCGAT
GCGAACGTATCTATTGGTACCATTTTCAGCATCTTCAAGCTGAATGACCC
AGATTCAGTAGTAGACGCGGAGACTGCTGCACGAGCCATCATGCAGCCGG
GTCGCGAGATGGTAGCGGCTGGCTATGCCATGTATGGGTCGGCCACCAAT
CTGGTGATTTCCGTCGGAACCGGTGTGCATGGCTTCACGCTTGACCCGTC
ACTAGGTGAGTTCGTCCTCACACATCCTGACATCAAGATTCCCGCTCGTG
GTAAGATTTACTCAGTGAACGAGGGCAATGCGAAGAACTGGGATAAGCCC
ACTTCAGAATACGTTCAGAGCCTCAAATATCCCGAGGAGGGTAAGTCTAG
CTATTCTTTGCGTTACATTGGCTCCATGGTTGCGGACGTACACCGCACTC
TGTTCTACGGAGGCGTCTTCATCTACCCTGCCGACAAGAAGTCGCCGACT
GGCAAGCTTCGTCTTTTGTACGAGGCTGCACCCATGGCTTTCTTGATGGA
GCAAGCTGGTGGAAAAGCTACCACAGGAAAGCAACCCATTCTGGACGTCA
TTCCATCTTCAATTCATCAGCGGGTGCCTGTGTACATGGGCTCTGCTGAC
GATGTTTCTGATTTCGAGGCCTTAGCTGCCAAATACCTGTAA
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