Gcaud3505.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3505.t1
Unique Name	Gcaud3505.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	334

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_25_length_75543_cov_4.432116	contig	NODE_25_length_75543_cov_4.432116:8628..9629 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	10160.XP_004623911.1
Preferred name	CHST11
PFAMs	Sulfotransfer_2
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00007,RC00231
KEGG ko	ko:K01017
KEGG Reaction	R02180
KEGG Pathway	ko00532,map00532
GOs	GO:0000139,GO:0000902,GO:0000904,GO:0001501,GO:0001537,GO:0002062,GO:0002063,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006082,GO:0006790,GO:0006807,GO:0006928,GO:0006935,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007517,GO:0007585,GO:0008045,GO:0008146,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009605,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009888,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0010941,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016740,GO:0016782,GO:0017015,GO:0019538,GO:0022008,GO:0023051,GO:0023057,GO:0030030,GO:0030154,GO:0030166,GO:0030182,GO:0030203,GO:0030204,GO:0030206,GO:0030326,GO:0030512,GO:0031090,GO:0031175,GO:0031224,GO:0031984,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0033036,GO:0033037,GO:0034481,GO:0034645,GO:0035107,GO:0035108,GO:0035113,GO:0036342,GO:0040007,GO:0040011,GO:0042127,GO:0042221,GO:0042330,GO:0042733,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0047756,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048562,GO:0048568,GO:0048583,GO:0048585,GO:0048589,GO:0048598,GO:0048666,GO:0048667,GO:0048699,GO:0048701,GO:0048703,GO:0048704,GO:0048705,GO:0048706,GO:0048731,GO:0048736,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050650,GO:0050654,GO:0050659,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051216,GO:0060173,GO:0060548,GO:0061061,GO:0061448,GO:0061564,GO:0065007,GO:0071704,GO:0071840,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0097485,GO:0098588,GO:0098791,GO:0120036,GO:0120039,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903510,GO:1903844,GO:1903845,GO:1904888
Evalue	1.64e-11
EggNOG OGs	KOG4651@1\|root,KOG4651@2759\|Eukaryota,39NS8@33154\|Opisthokonta,3BPSA@33208\|Metazoa,3D6N3@33213\|Bilateria,489R0@7711\|Chordata,498GE@7742\|Vertebrata,3J5MC@40674\|Mammalia,35MVQ@314146\|Euarchontoglires,4PYG5@9989\|Rodentia
EC	2.8.2.5
Description	Carbohydrate sulfotransferase
COG category	G
BRITE	ko00000,ko00001,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3505	Gcaud3505	Gracilaria caudata M_176_S67 male	gene	NODE_25_length_75543_cov_4.432116 8628..9629 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3505.t1.start1	Gcaud3505.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_25_length_75543_cov_4.432116 8628..8630 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3505.t1.CDS1	Gcaud3505.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_25_length_75543_cov_4.432116 8628..9629 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3505.t1.exon1	Gcaud3505.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_25_length_75543_cov_4.432116 8628..9629 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3505.t1.stop1	Gcaud3505.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_25_length_75543_cov_4.432116 9627..9629 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3505.t1	Gcaud3505.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_25_length_75543_cov_4.432116 8628..9629 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_25_length_75543_cov_4.432116:8628..9629+
coding sequence from alignment at NODE_25_length_75543_cov_4.432116:8628..9629+

mRNA sequence

>Gcaud3505.t1 ID=Gcaud3505.t1|Name=Gcaud3505.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=334bp
MMCVLQSQGVDETQVTTMSARVPELAVVDAVRAPPMRAEQIRERCAFCAG
RASVDVRRLRSYGPAYSSIVVSHALKVVYVPVFKVATTATMWQIAYLEAN
EHVLNATGNDLDVALHDMGHPAWRQHAILRWPEHHISSVLQSASYLKFGF
VRNPYHRLVSAYVDKIQRPTVDSYEYQSQMYSLFGDDVSERSAANITKPS
FHRFVTTVASVLNQSTNHAWRQQQFLFEDNRSRRDVHWRPQVELLHPDII
PFDFIGTFDNLLNDRHLVLQWMYQHTHRRIPPHMLEKRHATDPAHKSHLY
QIIHDNHQLRQLIVHTYKEDFDTFNFSTQPPAV*

spliced messenger RNA

>Gcaud3505.t1 ID=Gcaud3505.t1|Name=Gcaud3505.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:8628..9629+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTGCGTGTTGCAGTCGCAAGGTGTGGACGAGACGCAGGTCACCAC
CATGTCGGCGCGCGTGCCGGAGCTGGCCGTGGTTGACGCCGTGCGTGCGC
CGCCGATGCGCGCGGAGCAGATACGTGAGAGATGTGCGTTTTGTGCGGGA
CGGGCGAGCGTTGATGTGAGACGGTTGCGGTCGTATGGACCGGCTTATTC
GTCCATTGTTGTGTCGCATGCGCTCAAGGTGGTGTACGTGCCGGTGTTTA
AGGTGGCGACTACCGCCACCATGTGGCAGATTGCGTACTTGGAGGCTAAT
GAGCACGTGCTGAACGCGACGGGCAATGACTTGGACGTGGCTCTGCATGA
TATGGGTCACCCGGCGTGGAGACAGCATGCTATTCTTCGATGGCCGGAGC
ATCACATTTCGAGCGTGTTGCAGAGTGCTTCTTATCTCAAGTTTGGCTTT
GTTCGCAACCCTTATCATCGCTTGGTCTCTGCGTACGTCGACAAGATTCA
ACGTCCTACTGTTGATTCGTACGAGTATCAGAGTCAGATGTACAGTCTGT
TTGGAGACGATGTATCAGAACGCTCCGCCGCCAACATCACAAAGCCCTCC
TTTCATCGTTTCGTCACCACCGTGGCGTCTGTATTGAACCAATCTACCAA
TCACGCTTGGCGTCAACAACAGTTTTTGTTTGAAGATAACCGCAGTCGAC
GTGATGTTCATTGGCGCCCTCAGGTCGAATTATTACACCCGGATATCATT
CCGTTCGATTTCATTGGAACCTTTGATAACTTGCTCAACGATAGGCATCT
TGTGCTGCAATGGATGTATCAACATACTCATCGTCGAATCCCCCCACATA
TGCTGGAAAAACGTCATGCAACCGATCCGGCTCACAAGAGTCATCTCTAT
CAAATCATTCATGACAATCATCAACTTCGTCAACTCATAGTTCACACCTA
CAAGGAGGACTTTGACACGTTTAACTTTTCCACTCAGCCCCCAGCCGTTT
GA

protein sequence of Gcaud3505.t1

>Gcaud3505.t1 ID=Gcaud3505.t1|Name=Gcaud3505.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=334bp
MMCVLQSQGVDETQVTTMSARVPELAVVDAVRAPPMRAEQIRERCAFCAG
RASVDVRRLRSYGPAYSSIVVSHALKVVYVPVFKVATTATMWQIAYLEAN
EHVLNATGNDLDVALHDMGHPAWRQHAILRWPEHHISSVLQSASYLKFGF
VRNPYHRLVSAYVDKIQRPTVDSYEYQSQMYSLFGDDVSERSAANITKPS
FHRFVTTVASVLNQSTNHAWRQQQFLFEDNRSRRDVHWRPQVELLHPDII
PFDFIGTFDNLLNDRHLVLQWMYQHTHRRIPPHMLEKRHATDPAHKSHLY
QIIHDNHQLRQLIVHTYKEDFDTFNFSTQPPAV*

mRNA from alignment at NODE_25_length_75543_cov_4.432116:8628..9629+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3505.t1 ID=Gcaud3505.t1|Name=Gcaud3505.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:8628..9629+ (Gracilaria caudata M_176_S67 male)
ATGATGTGCGTGTTGCAGTCGCAAGGTGTGGACGAGACGCAGGTCACCAC
CATGTCGGCGCGCGTGCCGGAGCTGGCCGTGGTTGACGCCGTGCGTGCGC
CGCCGATGCGCGCGGAGCAGATACGTGAGAGATGTGCGTTTTGTGCGGGA
CGGGCGAGCGTTGATGTGAGACGGTTGCGGTCGTATGGACCGGCTTATTC
GTCCATTGTTGTGTCGCATGCGCTCAAGGTGGTGTACGTGCCGGTGTTTA
AGGTGGCGACTACCGCCACCATGTGGCAGATTGCGTACTTGGAGGCTAAT
GAGCACGTGCTGAACGCGACGGGCAATGACTTGGACGTGGCTCTGCATGA
TATGGGTCACCCGGCGTGGAGACAGCATGCTATTCTTCGATGGCCGGAGC
ATCACATTTCGAGCGTGTTGCAGAGTGCTTCTTATCTCAAGTTTGGCTTT
GTTCGCAACCCTTATCATCGCTTGGTCTCTGCGTACGTCGACAAGATTCA
ACGTCCTACTGTTGATTCGTACGAGTATCAGAGTCAGATGTACAGTCTGT
TTGGAGACGATGTATCAGAACGCTCCGCCGCCAACATCACAAAGCCCTCC
TTTCATCGTTTCGTCACCACCGTGGCGTCTGTATTGAACCAATCTACCAA
TCACGCTTGGCGTCAACAACAGTTTTTGTTTGAAGATAACCGCAGTCGAC
GTGATGTTCATTGGCGCCCTCAGGTCGAATTATTACACCCGGATATCATT
CCGTTCGATTTCATTGGAACCTTTGATAACTTGCTCAACGATAGGCATCT
TGTGCTGCAATGGATGTATCAACATACTCATCGTCGAATCCCCCCACATA
TGCTGGAAAAACGTCATGCAACCGATCCGGCTCACAAGAGTCATCTCTAT
CAAATCATTCATGACAATCATCAACTTCGTCAACTCATAGTTCACACCTA
CAAGGAGGACTTTGACACGTTTAACTTTTCCACTCAGCCCCCAGCCGTTT
GA

Coding sequence (CDS) from alignment at NODE_25_length_75543_cov_4.432116:8628..9629+

>Gcaud3505.t1 ID=Gcaud3505.t1|Name=Gcaud3505.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1002bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:8628..9629+ (Gracilaria caudata M_176_S67 male)
ATGATGTGCGTGTTGCAGTCGCAAGGTGTGGACGAGACGCAGGTCACCAC
CATGTCGGCGCGCGTGCCGGAGCTGGCCGTGGTTGACGCCGTGCGTGCGC
CGCCGATGCGCGCGGAGCAGATACGTGAGAGATGTGCGTTTTGTGCGGGA
CGGGCGAGCGTTGATGTGAGACGGTTGCGGTCGTATGGACCGGCTTATTC
GTCCATTGTTGTGTCGCATGCGCTCAAGGTGGTGTACGTGCCGGTGTTTA
AGGTGGCGACTACCGCCACCATGTGGCAGATTGCGTACTTGGAGGCTAAT
GAGCACGTGCTGAACGCGACGGGCAATGACTTGGACGTGGCTCTGCATGA
TATGGGTCACCCGGCGTGGAGACAGCATGCTATTCTTCGATGGCCGGAGC
ATCACATTTCGAGCGTGTTGCAGAGTGCTTCTTATCTCAAGTTTGGCTTT
GTTCGCAACCCTTATCATCGCTTGGTCTCTGCGTACGTCGACAAGATTCA
ACGTCCTACTGTTGATTCGTACGAGTATCAGAGTCAGATGTACAGTCTGT
TTGGAGACGATGTATCAGAACGCTCCGCCGCCAACATCACAAAGCCCTCC
TTTCATCGTTTCGTCACCACCGTGGCGTCTGTATTGAACCAATCTACCAA
TCACGCTTGGCGTCAACAACAGTTTTTGTTTGAAGATAACCGCAGTCGAC
GTGATGTTCATTGGCGCCCTCAGGTCGAATTATTACACCCGGATATCATT
CCGTTCGATTTCATTGGAACCTTTGATAACTTGCTCAACGATAGGCATCT
TGTGCTGCAATGGATGTATCAACATACTCATCGTCGAATCCCCCCACATA
TGCTGGAAAAACGTCATGCAACCGATCCGGCTCACAAGAGTCATCTCTAT
CAAATCATTCATGACAATCATCAACTTCGTCAACTCATAGTTCACACCTA
CAAGGAGGACTTTGACACGTTTAACTTTTCCACTCAGCCCCCAGCCGTTT
GA