Gcaud3504.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3504.t1
Unique Name	Gcaud3504.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	306

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_25_length_75543_cov_4.432116	contig	NODE_25_length_75543_cov_4.432116:7110..8134 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	195253.Syn6312_3238
Max annot lvl	1117\|Cyanobacteria
Evalue	7.07e-09
EggNOG OGs	28NP8@1\|root,2ZBP7@2\|Bacteria,1G577@1117\|Cyanobacteria,1H1CQ@1129\|Synechococcus

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3504	Gcaud3504	Gracilaria caudata M_176_S67 male	gene	NODE_25_length_75543_cov_4.432116 7110..8134 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3504.t1	Gcaud3504.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_25_length_75543_cov_4.432116 7110..8134 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3504.t1.stop1	Gcaud3504.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_25_length_75543_cov_4.432116 7110..7112 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3504.t1.CDS1	Gcaud3504.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_25_length_75543_cov_4.432116 7110..7496 -
Gcaud3504.t1.CDS2	Gcaud3504.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_25_length_75543_cov_4.432116 7604..8134 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3504.t1.exon1	Gcaud3504.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_25_length_75543_cov_4.432116 7110..7496 -
Gcaud3504.t1.exon2	Gcaud3504.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_25_length_75543_cov_4.432116 7604..8134 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3504.t1.intron1	Gcaud3504.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_25_length_75543_cov_4.432116 7497..7603 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3504.t1.start1	Gcaud3504.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_25_length_75543_cov_4.432116 8132..8134 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_25_length_75543_cov_4.432116:7110..8134-
coding sequence from alignment at NODE_25_length_75543_cov_4.432116:7110..8134-

mRNA sequence

>Gcaud3504.t1 ID=Gcaud3504.t1|Name=Gcaud3504.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=306bp
MSAFAPPSLSPSFSCSTRHVSICRRVSRARVARRRVPPSASVEHESDSTL
STSGNSNIADTRGFSLRDVPIQRFELLQERDDTLATSGAYAIRDASDDVV
YMGYSRNVAAKLRFHQRLRAESCVRFQVYVPAVPPELVSPQMLESVLEYW
VREIGGVPAGNTVDRALWESANAVDRKSASASASASAQVPVRERSTPPRT
RRASASDASSTASTTFSDAFRATASAGADWSASDQDYVQVDVDPFDPFSA
SKTRAEPRVPWAQDDDDQSQADWVPILALMGVAGVIWLIGMLGSALPAAT
PSMGM*

spliced messenger RNA

>Gcaud3504.t1 ID=Gcaud3504.t1|Name=Gcaud3504.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=918bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:7110..8134- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCCTTCGCGCCGCCGTCGCTCTCGCCGTCGTTTTCGTGTTCGAC
GCGACACGTCTCCATCTGCCGTCGCGTCTCGCGCGCGCGCGTGGCGCGTC
GTCGTGTTCCCCCCTCCGCAAGCGTGGAGCACGAGTCCGACAGCACGCTG
TCCACAAGCGGCAACAGCAACATCGCCGACACGCGCGGGTTTTCGTTGCG
CGACGTGCCCATACAACGCTTCGAGCTGCTGCAAGAGCGCGATGACACTC
TGGCCACCAGCGGGGCGTACGCCATTCGCGACGCGAGCGATGACGTGGTG
TACATGGGGTACAGCAGGAACGTGGCGGCGAAGCTTCGCTTTCATCAGCG
GTTGCGAGCCGAGAGCTGCGTTCGTTTCCAGGTGTACGTGCCGGCGGTGC
CGCCAGAACTGGTGTCGCCGCAGATGCTGGAGAGCGTGTTGGAGTACTGG
GTGAGGGAGATTGGCGGCGTGCCCGCGGGCAACACGGTGGATCGTGCGTT
GTGGGAAAGCGCGAACGCGGTGGATCGAAAGTCCGCCTCCGCCTCCGCCT
CCGCCTCCGCTCAAGTTCCGGTGAGGGAGCGCAGCACGCCGCCCCGCACG
CGACGCGCCTCAGCGTCGGACGCTTCTTCCACGGCGTCCACCACCTTTTC
GGATGCGTTTCGCGCAACGGCCTCCGCGGGTGCCGACTGGAGCGCGTCGG
ACCAGGACTATGTGCAGGTAGATGTTGACCCGTTCGATCCGTTCTCCGCG
TCCAAGACGCGAGCGGAGCCGCGCGTGCCGTGGGCTCAGGACGACGACGA
TCAGTCGCAGGCCGACTGGGTGCCCATTCTGGCTCTCATGGGCGTGGCCG
GCGTGATCTGGCTCATCGGCATGCTCGGCAGCGCGCTGCCCGCGGCCACT
CCGTCCATGGGCATGTAA

protein sequence of Gcaud3504.t1

>Gcaud3504.t1 ID=Gcaud3504.t1|Name=Gcaud3504.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=306bp
MSAFAPPSLSPSFSCSTRHVSICRRVSRARVARRRVPPSASVEHESDSTL
STSGNSNIADTRGFSLRDVPIQRFELLQERDDTLATSGAYAIRDASDDVV
YMGYSRNVAAKLRFHQRLRAESCVRFQVYVPAVPPELVSPQMLESVLEYW
VREIGGVPAGNTVDRALWESANAVDRKSASASASASAQVPVRERSTPPRT
RRASASDASSTASTTFSDAFRATASAGADWSASDQDYVQVDVDPFDPFSA
SKTRAEPRVPWAQDDDDQSQADWVPILALMGVAGVIWLIGMLGSALPAAT
PSMGM*

mRNA from alignment at NODE_25_length_75543_cov_4.432116:7110..8134-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3504.t1 ID=Gcaud3504.t1|Name=Gcaud3504.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1025bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:7110..8134- (Gracilaria caudata M_176_S67 male)
ATGTCCGCCTTCGCGCCGCCGTCGCTCTCGCCGTCGTTTTCGTGTTCGAC
GCGACACGTCTCCATCTGCCGTCGCGTCTCGCGCGCGCGCGTGGCGCGTC
GTCGTGTTCCCCCCTCCGCAAGCGTGGAGCACGAGTCCGACAGCACGCTG
TCCACAAGCGGCAACAGCAACATCGCCGACACGCGCGGGTTTTCGTTGCG
CGACGTGCCCATACAACGCTTCGAGCTGCTGCAAGAGCGCGATGACACTC
TGGCCACCAGCGGGGCGTACGCCATTCGCGACGCGAGCGATGACGTGGTG
TACATGGGGTACAGCAGGAACGTGGCGGCGAAGCTTCGCTTTCATCAGCG
GTTGCGAGCCGAGAGCTGCGTTCGTTTCCAGGTGTACGTGCCGGCGGTGC
CGCCAGAACTGGTGTCGCCGCAGATGCTGGAGAGCGTGTTGGAGTACTGG
GTGAGGGAGATTGGCGGCGTGCCCGCGGGCAACACGGTGGATCGTGCGTT
GTGGGAAAGCGCGAACGCGGTGGATCGAAAGGTACTGTTGGCCTCCATCT
TTGTGCTGTTTCTCGCGTCGTCCATTCTCAAGCAGTTCCTTTACTTTACA
ACGCGCTACTAATGTGATTTGTTGTTGTGCGCACTCAGTCCGCCTCCGCC
TCCGCCTCCGCCTCCGCTCAAGTTCCGGTGAGGGAGCGCAGCACGCCGCC
CCGCACGCGACGCGCCTCAGCGTCGGACGCTTCTTCCACGGCGTCCACCA
CCTTTTCGGATGCGTTTCGCGCAACGGCCTCCGCGGGTGCCGACTGGAGC
GCGTCGGACCAGGACTATGTGCAGGTAGATGTTGACCCGTTCGATCCGTT
CTCCGCGTCCAAGACGCGAGCGGAGCCGCGCGTGCCGTGGGCTCAGGACG
ACGACGATCAGTCGCAGGCCGACTGGGTGCCCATTCTGGCTCTCATGGGC
GTGGCCGGCGTGATCTGGCTCATCGGCATGCTCGGCAGCGCGCTGCCCGC
GGCCACTCCGTCCATGGGCATGTAA

Coding sequence (CDS) from alignment at NODE_25_length_75543_cov_4.432116:7110..8134-

>Gcaud3504.t1 ID=Gcaud3504.t1|Name=Gcaud3504.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=918bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:7110..8134- (Gracilaria caudata M_176_S67 male)
ATGTCCGCCTTCGCGCCGCCGTCGCTCTCGCCGTCGTTTTCGTGTTCGAC
GCGACACGTCTCCATCTGCCGTCGCGTCTCGCGCGCGCGCGTGGCGCGTC
GTCGTGTTCCCCCCTCCGCAAGCGTGGAGCACGAGTCCGACAGCACGCTG
TCCACAAGCGGCAACAGCAACATCGCCGACACGCGCGGGTTTTCGTTGCG
CGACGTGCCCATACAACGCTTCGAGCTGCTGCAAGAGCGCGATGACACTC
TGGCCACCAGCGGGGCGTACGCCATTCGCGACGCGAGCGATGACGTGGTG
TACATGGGGTACAGCAGGAACGTGGCGGCGAAGCTTCGCTTTCATCAGCG
GTTGCGAGCCGAGAGCTGCGTTCGTTTCCAGGTGTACGTGCCGGCGGTGC
CGCCAGAACTGGTGTCGCCGCAGATGCTGGAGAGCGTGTTGGAGTACTGG
GTGAGGGAGATTGGCGGCGTGCCCGCGGGCAACACGGTGGATCGTGCGTT
GTGGGAAAGCGCGAACGCGGTGGATCGAAAGTCCGCCTCCGCCTCCGCCT
CCGCCTCCGCTCAAGTTCCGGTGAGGGAGCGCAGCACGCCGCCCCGCACG
CGACGCGCCTCAGCGTCGGACGCTTCTTCCACGGCGTCCACCACCTTTTC
GGATGCGTTTCGCGCAACGGCCTCCGCGGGTGCCGACTGGAGCGCGTCGG
ACCAGGACTATGTGCAGGTAGATGTTGACCCGTTCGATCCGTTCTCCGCG
TCCAAGACGCGAGCGGAGCCGCGCGTGCCGTGGGCTCAGGACGACGACGA
TCAGTCGCAGGCCGACTGGGTGCCCATTCTGGCTCTCATGGGCGTGGCCG
GCGTGATCTGGCTCATCGGCATGCTCGGCAGCGCGCTGCCCGCGGCCACT
CCGTCCATGGGCATGTAA