Gcaud3502.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3502.t1
Unique Name	Gcaud3502.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	567

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_25_length_75543_cov_4.432116	contig	NODE_25_length_75543_cov_4.432116:1550..3250 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	457424.BFAG_04157
PFAMs	ABM
Max annot lvl	976\|Bacteroidetes
Evalue	1.5e-07
EggNOG OGs	COG1359@1\|root,COG1359@2\|Bacteria,4NXQZ@976\|Bacteroidetes,2FV7X@200643\|Bacteroidia,4AU4X@815\|Bacteroidaceae
Description	Antibiotic biosynthesis monooxygenase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3502	Gcaud3502	Gracilaria caudata M_176_S67 male	gene	NODE_25_length_75543_cov_4.432116 1550..3250 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3502.t1.start1	Gcaud3502.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_25_length_75543_cov_4.432116 1550..1552 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3502.t1.CDS1	Gcaud3502.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_25_length_75543_cov_4.432116 1550..3250 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3502.t1.exon1	Gcaud3502.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_25_length_75543_cov_4.432116 1550..3250 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3502.t1.stop1	Gcaud3502.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_25_length_75543_cov_4.432116 3248..3250 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3502.t1	Gcaud3502.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_25_length_75543_cov_4.432116 1550..3250 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_25_length_75543_cov_4.432116:1550..3250+
coding sequence from alignment at NODE_25_length_75543_cov_4.432116:1550..3250+

mRNA sequence

>Gcaud3502.t1 ID=Gcaud3502.t1|Name=Gcaud3502.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=567bp
MRLSPVCSLLLLAIISIAHAQPEPQCQPPSSHVTGFSVFTARPEDANAFI
QDFNGLVETSRAEPGTVQYNMYTNPTQPGVIGFIETYKDFEALQKHLASE
HVTSIFGHQYYNELRIKPAELYGPWTEVKVDGDECSAEEPESSQEPIEMV
FYWIMNCTRQRVWDVITDWEDASWGLGHPETTMVPLDESGQIMSDEEAAK
VPRPLDVQRGLGPVAQRRTWANGNVVDVRMVARNDSNFTTVQQTLSLTSF
AGVTFDDYFVTMSLDAEGLDPDLQSRMRYHIKATTKDGNNDVARLALKNN
FYGPRIDYYQVYFNCSKGINMKRAETTVKSVYDALRAAPQDRLKMLDGLF
EADFDLAAYLERTIGDVDVDTQIDVKLPTEIFATVDLRVVAVEDIVSTTM
AGSTVESRIVIYQLNEWGRVVSTRIFDNAAKDCRDKKCRVLMRKTDRYYS
TLGKGNAEKLKRVFTEDADIQYPVSFAAPEKRSVEEVFTTLFESAESVEF
ERSERRSFVNAGARETAQLIDATFSYAGGESSKAAHVEIVSFDKGSQISS
LEAFFEPKDVAYAELE*

spliced messenger RNA

>Gcaud3502.t1 ID=Gcaud3502.t1|Name=Gcaud3502.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1701bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:1550..3250+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCTATCGCCCGTCTGTTCCCTCCTGCTCCTTGCGATCATTTCCAT
TGCGCATGCTCAACCAGAACCACAATGTCAACCTCCTTCTTCTCACGTCA
CCGGTTTCTCGGTCTTCACAGCTCGTCCAGAGGATGCCAACGCCTTTATT
CAGGACTTTAATGGTCTCGTCGAGACGTCTCGAGCCGAGCCTGGCACCGT
GCAGTACAACATGTACACCAATCCCACCCAACCTGGTGTGATTGGTTTCA
TCGAGACGTACAAAGACTTTGAGGCTCTTCAGAAACATCTTGCCAGTGAG
CATGTCACTAGCATTTTCGGTCATCAGTACTACAATGAACTCAGAATCAA
GCCTGCAGAGTTGTACGGTCCGTGGACTGAGGTCAAGGTTGATGGCGATG
AGTGTTCTGCAGAAGAGCCTGAAAGCTCGCAGGAGCCCATTGAAATGGTT
TTCTACTGGATCATGAACTGTACCAGACAACGTGTGTGGGATGTGATTAC
CGACTGGGAGGACGCCTCGTGGGGTCTGGGACACCCGGAGACAACCATGG
TTCCTCTCGATGAAAGCGGACAAATTATGTCCGACGAAGAAGCTGCGAAG
GTACCGAGACCTCTCGATGTACAGCGAGGATTAGGACCAGTAGCGCAGCG
TCGTACCTGGGCCAATGGAAACGTGGTGGATGTACGCATGGTTGCAAGGA
ACGACTCGAACTTCACCACTGTGCAGCAAACTCTTTCGCTCACTTCATTC
GCTGGTGTTACGTTTGACGACTACTTTGTGACCATGAGCCTAGATGCTGA
AGGACTGGACCCGGATTTGCAATCACGTATGCGATATCATATCAAAGCAA
CTACAAAGGATGGCAACAACGACGTGGCTAGACTGGCGTTGAAAAACAAC
TTTTACGGGCCGCGAATTGATTACTATCAGGTGTACTTCAACTGCTCCAA
GGGGATCAACATGAAACGCGCTGAGACGACGGTGAAAAGTGTTTATGACG
CTCTTCGAGCCGCACCGCAGGACAGATTGAAGATGTTGGATGGTTTGTTT
GAGGCTGATTTTGACCTGGCTGCATACCTTGAGAGAACGATTGGTGATGT
GGACGTTGACACTCAAATTGATGTGAAGCTTCCCACCGAGATTTTTGCCA
CTGTGGATCTTCGAGTTGTGGCTGTGGAAGACATTGTAAGCACAACAATG
GCAGGCAGTACCGTGGAAAGCCGTATTGTAATCTACCAGCTCAACGAATG
GGGCCGTGTTGTGTCCACTCGCATCTTTGATAACGCTGCGAAAGATTGCC
GCGATAAAAAGTGCAGAGTGCTTATGCGCAAAACGGACAGGTATTATTCC
ACTCTGGGGAAGGGTAACGCAGAGAAATTAAAACGTGTGTTCACCGAGGA
CGCCGATATCCAATATCCGGTTTCGTTTGCAGCGCCGGAAAAACGGTCCG
TTGAAGAGGTGTTCACAACGCTGTTCGAATCTGCTGAGTCGGTTGAGTTT
GAACGTTCGGAAAGGCGCAGTTTTGTGAATGCAGGAGCGCGAGAAACGGC
TCAGCTGATTGACGCAACGTTCAGTTATGCAGGGGGCGAAAGTTCGAAGG
CGGCGCATGTGGAGATCGTCAGCTTCGACAAGGGCTCGCAGATTTCCTCT
CTTGAAGCATTTTTCGAGCCGAAGGATGTGGCGTACGCTGAGCTGGAATA
A

protein sequence of Gcaud3502.t1

>Gcaud3502.t1 ID=Gcaud3502.t1|Name=Gcaud3502.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=567bp
MRLSPVCSLLLLAIISIAHAQPEPQCQPPSSHVTGFSVFTARPEDANAFI
QDFNGLVETSRAEPGTVQYNMYTNPTQPGVIGFIETYKDFEALQKHLASE
HVTSIFGHQYYNELRIKPAELYGPWTEVKVDGDECSAEEPESSQEPIEMV
FYWIMNCTRQRVWDVITDWEDASWGLGHPETTMVPLDESGQIMSDEEAAK
VPRPLDVQRGLGPVAQRRTWANGNVVDVRMVARNDSNFTTVQQTLSLTSF
AGVTFDDYFVTMSLDAEGLDPDLQSRMRYHIKATTKDGNNDVARLALKNN
FYGPRIDYYQVYFNCSKGINMKRAETTVKSVYDALRAAPQDRLKMLDGLF
EADFDLAAYLERTIGDVDVDTQIDVKLPTEIFATVDLRVVAVEDIVSTTM
AGSTVESRIVIYQLNEWGRVVSTRIFDNAAKDCRDKKCRVLMRKTDRYYS
TLGKGNAEKLKRVFTEDADIQYPVSFAAPEKRSVEEVFTTLFESAESVEF
ERSERRSFVNAGARETAQLIDATFSYAGGESSKAAHVEIVSFDKGSQISS
LEAFFEPKDVAYAELE*

mRNA from alignment at NODE_25_length_75543_cov_4.432116:1550..3250+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3502.t1 ID=Gcaud3502.t1|Name=Gcaud3502.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1701bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:1550..3250+ (Gracilaria caudata M_176_S67 male)
ATGCGTCTATCGCCCGTCTGTTCCCTCCTGCTCCTTGCGATCATTTCCAT
TGCGCATGCTCAACCAGAACCACAATGTCAACCTCCTTCTTCTCACGTCA
CCGGTTTCTCGGTCTTCACAGCTCGTCCAGAGGATGCCAACGCCTTTATT
CAGGACTTTAATGGTCTCGTCGAGACGTCTCGAGCCGAGCCTGGCACCGT
GCAGTACAACATGTACACCAATCCCACCCAACCTGGTGTGATTGGTTTCA
TCGAGACGTACAAAGACTTTGAGGCTCTTCAGAAACATCTTGCCAGTGAG
CATGTCACTAGCATTTTCGGTCATCAGTACTACAATGAACTCAGAATCAA
GCCTGCAGAGTTGTACGGTCCGTGGACTGAGGTCAAGGTTGATGGCGATG
AGTGTTCTGCAGAAGAGCCTGAAAGCTCGCAGGAGCCCATTGAAATGGTT
TTCTACTGGATCATGAACTGTACCAGACAACGTGTGTGGGATGTGATTAC
CGACTGGGAGGACGCCTCGTGGGGTCTGGGACACCCGGAGACAACCATGG
TTCCTCTCGATGAAAGCGGACAAATTATGTCCGACGAAGAAGCTGCGAAG
GTACCGAGACCTCTCGATGTACAGCGAGGATTAGGACCAGTAGCGCAGCG
TCGTACCTGGGCCAATGGAAACGTGGTGGATGTACGCATGGTTGCAAGGA
ACGACTCGAACTTCACCACTGTGCAGCAAACTCTTTCGCTCACTTCATTC
GCTGGTGTTACGTTTGACGACTACTTTGTGACCATGAGCCTAGATGCTGA
AGGACTGGACCCGGATTTGCAATCACGTATGCGATATCATATCAAAGCAA
CTACAAAGGATGGCAACAACGACGTGGCTAGACTGGCGTTGAAAAACAAC
TTTTACGGGCCGCGAATTGATTACTATCAGGTGTACTTCAACTGCTCCAA
GGGGATCAACATGAAACGCGCTGAGACGACGGTGAAAAGTGTTTATGACG
CTCTTCGAGCCGCACCGCAGGACAGATTGAAGATGTTGGATGGTTTGTTT
GAGGCTGATTTTGACCTGGCTGCATACCTTGAGAGAACGATTGGTGATGT
GGACGTTGACACTCAAATTGATGTGAAGCTTCCCACCGAGATTTTTGCCA
CTGTGGATCTTCGAGTTGTGGCTGTGGAAGACATTGTAAGCACAACAATG
GCAGGCAGTACCGTGGAAAGCCGTATTGTAATCTACCAGCTCAACGAATG
GGGCCGTGTTGTGTCCACTCGCATCTTTGATAACGCTGCGAAAGATTGCC
GCGATAAAAAGTGCAGAGTGCTTATGCGCAAAACGGACAGGTATTATTCC
ACTCTGGGGAAGGGTAACGCAGAGAAATTAAAACGTGTGTTCACCGAGGA
CGCCGATATCCAATATCCGGTTTCGTTTGCAGCGCCGGAAAAACGGTCCG
TTGAAGAGGTGTTCACAACGCTGTTCGAATCTGCTGAGTCGGTTGAGTTT
GAACGTTCGGAAAGGCGCAGTTTTGTGAATGCAGGAGCGCGAGAAACGGC
TCAGCTGATTGACGCAACGTTCAGTTATGCAGGGGGCGAAAGTTCGAAGG
CGGCGCATGTGGAGATCGTCAGCTTCGACAAGGGCTCGCAGATTTCCTCT
CTTGAAGCATTTTTCGAGCCGAAGGATGTGGCGTACGCTGAGCTGGAATA
A

Coding sequence (CDS) from alignment at NODE_25_length_75543_cov_4.432116:1550..3250+

>Gcaud3502.t1 ID=Gcaud3502.t1|Name=Gcaud3502.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1701bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:1550..3250+ (Gracilaria caudata M_176_S67 male)
ATGCGTCTATCGCCCGTCTGTTCCCTCCTGCTCCTTGCGATCATTTCCAT
TGCGCATGCTCAACCAGAACCACAATGTCAACCTCCTTCTTCTCACGTCA
CCGGTTTCTCGGTCTTCACAGCTCGTCCAGAGGATGCCAACGCCTTTATT
CAGGACTTTAATGGTCTCGTCGAGACGTCTCGAGCCGAGCCTGGCACCGT
GCAGTACAACATGTACACCAATCCCACCCAACCTGGTGTGATTGGTTTCA
TCGAGACGTACAAAGACTTTGAGGCTCTTCAGAAACATCTTGCCAGTGAG
CATGTCACTAGCATTTTCGGTCATCAGTACTACAATGAACTCAGAATCAA
GCCTGCAGAGTTGTACGGTCCGTGGACTGAGGTCAAGGTTGATGGCGATG
AGTGTTCTGCAGAAGAGCCTGAAAGCTCGCAGGAGCCCATTGAAATGGTT
TTCTACTGGATCATGAACTGTACCAGACAACGTGTGTGGGATGTGATTAC
CGACTGGGAGGACGCCTCGTGGGGTCTGGGACACCCGGAGACAACCATGG
TTCCTCTCGATGAAAGCGGACAAATTATGTCCGACGAAGAAGCTGCGAAG
GTACCGAGACCTCTCGATGTACAGCGAGGATTAGGACCAGTAGCGCAGCG
TCGTACCTGGGCCAATGGAAACGTGGTGGATGTACGCATGGTTGCAAGGA
ACGACTCGAACTTCACCACTGTGCAGCAAACTCTTTCGCTCACTTCATTC
GCTGGTGTTACGTTTGACGACTACTTTGTGACCATGAGCCTAGATGCTGA
AGGACTGGACCCGGATTTGCAATCACGTATGCGATATCATATCAAAGCAA
CTACAAAGGATGGCAACAACGACGTGGCTAGACTGGCGTTGAAAAACAAC
TTTTACGGGCCGCGAATTGATTACTATCAGGTGTACTTCAACTGCTCCAA
GGGGATCAACATGAAACGCGCTGAGACGACGGTGAAAAGTGTTTATGACG
CTCTTCGAGCCGCACCGCAGGACAGATTGAAGATGTTGGATGGTTTGTTT
GAGGCTGATTTTGACCTGGCTGCATACCTTGAGAGAACGATTGGTGATGT
GGACGTTGACACTCAAATTGATGTGAAGCTTCCCACCGAGATTTTTGCCA
CTGTGGATCTTCGAGTTGTGGCTGTGGAAGACATTGTAAGCACAACAATG
GCAGGCAGTACCGTGGAAAGCCGTATTGTAATCTACCAGCTCAACGAATG
GGGCCGTGTTGTGTCCACTCGCATCTTTGATAACGCTGCGAAAGATTGCC
GCGATAAAAAGTGCAGAGTGCTTATGCGCAAAACGGACAGGTATTATTCC
ACTCTGGGGAAGGGTAACGCAGAGAAATTAAAACGTGTGTTCACCGAGGA
CGCCGATATCCAATATCCGGTTTCGTTTGCAGCGCCGGAAAAACGGTCCG
TTGAAGAGGTGTTCACAACGCTGTTCGAATCTGCTGAGTCGGTTGAGTTT
GAACGTTCGGAAAGGCGCAGTTTTGTGAATGCAGGAGCGCGAGAAACGGC
TCAGCTGATTGACGCAACGTTCAGTTATGCAGGGGGCGAAAGTTCGAAGG
CGGCGCATGTGGAGATCGTCAGCTTCGACAAGGGCTCGCAGATTTCCTCT
CTTGAAGCATTTTTCGAGCCGAAGGATGTGGCGTACGCTGAGCTGGAATA
A