Gcaud3499.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3499.t1
Unique Name	Gcaud3499.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	328

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_436_length_25374_cov_4.383380	contig	NODE_436_length_25374_cov_4.383380:22227..23483 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	10160.XP_004637504.1
Preferred name	GAL3ST2
PFAMs	Gal-3-0_sulfotr
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K09675,ko:K09677
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0006790,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0016020,GO:0016740,GO:0016782,GO:0019538,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0050694,GO:0051923,GO:0071704,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue	0.000746
EggNOG OGs	28K37@1\|root,2QSHR@2759\|Eukaryota,38BI1@33154\|Opisthokonta,3BBVX@33208\|Metazoa,3CUAA@33213\|Bilateria,482WX@7711\|Chordata,494YA@7742\|Vertebrata,3JEPN@40674\|Mammalia,35H58@314146\|Euarchontoglires,4Q744@9989\|Rodentia
Description	Galactose-3-O-sulfotransferase
COG category	G
BRITE	ko00000,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3499	Gcaud3499	Gracilaria caudata M_176_S67 male	gene	NODE_436_length_25374_cov_4.383380 22227..23483 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3499.t1	Gcaud3499.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_436_length_25374_cov_4.383380 22227..23483 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3499.t1.stop1	Gcaud3499.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_436_length_25374_cov_4.383380 22227..22229 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3499.t1.CDS1	Gcaud3499.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_436_length_25374_cov_4.383380 22227..23182 -
Gcaud3499.t1.CDS2	Gcaud3499.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_436_length_25374_cov_4.383380 23294..23312 -
Gcaud3499.t1.CDS3	Gcaud3499.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_436_length_25374_cov_4.383380 23475..23483 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3499.t1.exon1	Gcaud3499.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_436_length_25374_cov_4.383380 22227..23182 -
Gcaud3499.t1.exon2	Gcaud3499.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_436_length_25374_cov_4.383380 23294..23312 -
Gcaud3499.t1.exon3	Gcaud3499.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_436_length_25374_cov_4.383380 23475..23483 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3499.t1.intron1	Gcaud3499.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_436_length_25374_cov_4.383380 23183..23293 -
Gcaud3499.t1.intron2	Gcaud3499.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_436_length_25374_cov_4.383380 23313..23474 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3499.t1.start1	Gcaud3499.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_436_length_25374_cov_4.383380 23481..23483 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_436_length_25374_cov_4.383380:22227..23483-
coding sequence from alignment at NODE_436_length_25374_cov_4.383380:22227..23483-

mRNA sequence

>Gcaud3499.t1 ID=Gcaud3499.t1|Name=Gcaud3499.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=328bp
LTAYSACTDVERYVASLPRPGTKPVLSLSHRTMRRVPRVSVSNVLLLLPI
VLLLVFAVHVKNSDSFRALARVEPPPNERVHRPIFYLKMHKTASTTIAKA
LDRYARRHGLSISRASGRQYITKPNRSSARFDVIALQHMPYNLELLDTFL
NARPNLVLSSVRHPTDRAVSWFRQQITKFERVSQRDCPKKEKAILKEFDK
FVDKGRQQASQFFQLQERTARLALRPKKMNVTQVVSQFDFIFSQERLQDS
FECFCKTHGVHLCDAKHPVKKENAKKKRSCVHHVLMQHRPNVLTKGYEQD
LQVLEWVRQQLDECVKDIPNYCRCNSS*

spliced messenger RNA

>Gcaud3499.t1 ID=Gcaud3499.t1|Name=Gcaud3499.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=984bp|location=Sequence derived from alignment at NODE_436_length_25374_cov_4.383380:22227..23483- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGACGGCCTACAGCGCCTGCACCGACGTCGAGCGATACGTTGCTTCACT
GCCTCGTCCTGGCACCAAACCAGTGCTTTCCCTGTCGCATCGCACCATGC
GCCGAGTTCCTCGCGTCTCCGTCTCCAACGTGCTGCTACTGTTGCCCATT
GTTCTGCTGCTCGTGTTCGCCGTGCATGTGAAGAACAGCGACTCGTTCAG
GGCGCTTGCTCGTGTTGAGCCCCCTCCAAACGAGCGCGTTCACCGACCCA
TCTTCTACTTGAAGATGCACAAGACCGCGTCTACCACCATAGCAAAAGCG
TTGGATAGGTACGCCAGACGCCATGGACTCTCCATTTCACGCGCTTCTGG
ACGCCAGTATATCACAAAGCCGAATCGTTCCTCCGCTCGTTTTGACGTCA
TCGCTTTGCAACACATGCCGTATAATCTAGAACTTCTGGACACCTTTCTC
AACGCCCGCCCTAACTTGGTGCTCTCCAGCGTTCGTCACCCAACTGATCG
TGCCGTGTCATGGTTCAGACAACAAATTACCAAGTTTGAACGCGTTTCAC
AACGCGACTGCCCGAAGAAAGAAAAGGCTATCCTCAAAGAATTTGACAAA
TTTGTCGACAAGGGACGACAACAGGCATCACAATTCTTCCAGCTACAAGA
ACGAACAGCTAGACTCGCCCTTCGCCCAAAGAAGATGAATGTCACACAAG
TTGTGTCTCAGTTTGATTTCATCTTCTCACAAGAGCGACTCCAAGACAGT
TTTGAGTGCTTTTGCAAGACACATGGCGTCCATCTTTGTGATGCTAAGCA
CCCAGTTAAGAAAGAAAACGCAAAAAAGAAACGGAGTTGTGTGCATCACG
TTCTTATGCAACACCGTCCAAACGTTCTCACGAAAGGCTATGAACAAGAT
CTTCAAGTTTTGGAATGGGTTCGTCAGCAACTTGATGAGTGTGTGAAGGA
TATTCCCAACTACTGTCGCTGCAATAGCAGCTGA

protein sequence of Gcaud3499.t1

>Gcaud3499.t1 ID=Gcaud3499.t1|Name=Gcaud3499.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=328bp
LTAYSACTDVERYVASLPRPGTKPVLSLSHRTMRRVPRVSVSNVLLLLPI
VLLLVFAVHVKNSDSFRALARVEPPPNERVHRPIFYLKMHKTASTTIAKA
LDRYARRHGLSISRASGRQYITKPNRSSARFDVIALQHMPYNLELLDTFL
NARPNLVLSSVRHPTDRAVSWFRQQITKFERVSQRDCPKKEKAILKEFDK
FVDKGRQQASQFFQLQERTARLALRPKKMNVTQVVSQFDFIFSQERLQDS
FECFCKTHGVHLCDAKHPVKKENAKKKRSCVHHVLMQHRPNVLTKGYEQD
LQVLEWVRQQLDECVKDIPNYCRCNSS*

mRNA from alignment at NODE_436_length_25374_cov_4.383380:22227..23483-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3499.t1 ID=Gcaud3499.t1|Name=Gcaud3499.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1257bp|location=Sequence derived from alignment at NODE_436_length_25374_cov_4.383380:22227..23483- (Gracilaria caudata M_176_S67 male)
CTGACGGCCGTCCCACGCGTACTGTACACCGTTGGTACACAGCAAGGCGG
ATAGATACAAGCTGTCGCGCTGTATTCGTTTGCGAAGCGCCATGCACACA
CGTCAGCGCGGTGACAGTGGCGCTTACAAGCGCTGAAGTATCCACTGTAT
CTACAGGATCTGTCCGGGTAGTACAGCGCCTGCACCGACGGTACGTCTCT
CAGCATACAGCCTCCCTTCAAGGGAGTCCCTTGAACGTTGTGTCCGCTGC
GCGCTGACATTTCCTCGCGTGAGCGAATGCTGTCCCACGCCTTGGTCACA
GTCGAGCGATACGTTGCTTCACTGCCTCGTCCTGGCACCAAACCAGTGCT
TTCCCTGTCGCATCGCACCATGCGCCGAGTTCCTCGCGTCTCCGTCTCCA
ACGTGCTGCTACTGTTGCCCATTGTTCTGCTGCTCGTGTTCGCCGTGCAT
GTGAAGAACAGCGACTCGTTCAGGGCGCTTGCTCGTGTTGAGCCCCCTCC
AAACGAGCGCGTTCACCGACCCATCTTCTACTTGAAGATGCACAAGACCG
CGTCTACCACCATAGCAAAAGCGTTGGATAGGTACGCCAGACGCCATGGA
CTCTCCATTTCACGCGCTTCTGGACGCCAGTATATCACAAAGCCGAATCG
TTCCTCCGCTCGTTTTGACGTCATCGCTTTGCAACACATGCCGTATAATC
TAGAACTTCTGGACACCTTTCTCAACGCCCGCCCTAACTTGGTGCTCTCC
AGCGTTCGTCACCCAACTGATCGTGCCGTGTCATGGTTCAGACAACAAAT
TACCAAGTTTGAACGCGTTTCACAACGCGACTGCCCGAAGAAAGAAAAGG
CTATCCTCAAAGAATTTGACAAATTTGTCGACAAGGGACGACAACAGGCA
TCACAATTCTTCCAGCTACAAGAACGAACAGCTAGACTCGCCCTTCGCCC
AAAGAAGATGAATGTCACACAAGTTGTGTCTCAGTTTGATTTCATCTTCT
CACAAGAGCGACTCCAAGACAGTTTTGAGTGCTTTTGCAAGACACATGGC
GTCCATCTTTGTGATGCTAAGCACCCAGTTAAGAAAGAAAACGCAAAAAA
GAAACGGAGTTGTGTGCATCACGTTCTTATGCAACACCGTCCAAACGTTC
TCACGAAAGGCTATGAACAAGATCTTCAAGTTTTGGAATGGGTTCGTCAG
CAACTTGATGAGTGTGTGAAGGATATTCCCAACTACTGTCGCTGCAATAG
CAGCTGA

Coding sequence (CDS) from alignment at NODE_436_length_25374_cov_4.383380:22227..23483-

>Gcaud3499.t1 ID=Gcaud3499.t1|Name=Gcaud3499.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=984bp|location=Sequence derived from alignment at NODE_436_length_25374_cov_4.383380:22227..23483- (Gracilaria caudata M_176_S67 male)
CTGACGGCCTACAGCGCCTGCACCGACGTCGAGCGATACGTTGCTTCACT
GCCTCGTCCTGGCACCAAACCAGTGCTTTCCCTGTCGCATCGCACCATGC
GCCGAGTTCCTCGCGTCTCCGTCTCCAACGTGCTGCTACTGTTGCCCATT
GTTCTGCTGCTCGTGTTCGCCGTGCATGTGAAGAACAGCGACTCGTTCAG
GGCGCTTGCTCGTGTTGAGCCCCCTCCAAACGAGCGCGTTCACCGACCCA
TCTTCTACTTGAAGATGCACAAGACCGCGTCTACCACCATAGCAAAAGCG
TTGGATAGGTACGCCAGACGCCATGGACTCTCCATTTCACGCGCTTCTGG
ACGCCAGTATATCACAAAGCCGAATCGTTCCTCCGCTCGTTTTGACGTCA
TCGCTTTGCAACACATGCCGTATAATCTAGAACTTCTGGACACCTTTCTC
AACGCCCGCCCTAACTTGGTGCTCTCCAGCGTTCGTCACCCAACTGATCG
TGCCGTGTCATGGTTCAGACAACAAATTACCAAGTTTGAACGCGTTTCAC
AACGCGACTGCCCGAAGAAAGAAAAGGCTATCCTCAAAGAATTTGACAAA
TTTGTCGACAAGGGACGACAACAGGCATCACAATTCTTCCAGCTACAAGA
ACGAACAGCTAGACTCGCCCTTCGCCCAAAGAAGATGAATGTCACACAAG
TTGTGTCTCAGTTTGATTTCATCTTCTCACAAGAGCGACTCCAAGACAGT
TTTGAGTGCTTTTGCAAGACACATGGCGTCCATCTTTGTGATGCTAAGCA
CCCAGTTAAGAAAGAAAACGCAAAAAAGAAACGGAGTTGTGTGCATCACG
TTCTTATGCAACACCGTCCAAACGTTCTCACGAAAGGCTATGAACAAGAT
CTTCAAGTTTTGGAATGGGTTCGTCAGCAACTTGATGAGTGTGTGAAGGA
TATTCCCAACTACTGTCGCTGCAATAGCAGCTGA