Gcaud3498.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3498.t1
Unique Name	Gcaud3498.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	762

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_436_length_25374_cov_4.383380	contig	NODE_436_length_25374_cov_4.383380:18203..20550 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3498	Gcaud3498	Gracilaria caudata M_176_S67 male	gene	NODE_436_length_25374_cov_4.383380 18203..20550 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3498.t1	Gcaud3498.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_436_length_25374_cov_4.383380 18203..20550 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3498.t1.start1	Gcaud3498.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_436_length_25374_cov_4.383380 18203..18205 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3498.t1.CDS1	Gcaud3498.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_436_length_25374_cov_4.383380 18203..18243 +
Gcaud3498.t1.CDS2	Gcaud3498.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_436_length_25374_cov_4.383380 18306..20550 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3498.t1.exon1	Gcaud3498.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_436_length_25374_cov_4.383380 18203..18243 +
Gcaud3498.t1.exon2	Gcaud3498.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_436_length_25374_cov_4.383380 18306..20550 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3498.t1.intron1	Gcaud3498.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_436_length_25374_cov_4.383380 18244..18305 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3498.t1.stop1	Gcaud3498.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_436_length_25374_cov_4.383380 20548..20550 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_436_length_25374_cov_4.383380:18203..20550+
coding sequence from alignment at NODE_436_length_25374_cov_4.383380:18203..20550+

mRNA sequence

>Gcaud3498.t1 ID=Gcaud3498.t1|Name=Gcaud3498.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=762bp
MAPRRRRCSTRTTHKQSSISDFFTRKRDSPSPTPSAQLSNAPRRAIRRRH
RRASSIVQSSLAVKQESLPRNVKRITADTAAVQNALKLDAQFKSTVKHAV
SKEEQTPTPIMHSRSQPKSSRSRAARAQDHAIIQPMDVDDSPPPLTKEEL
LVEEALRSLECSQDVPQPQPQNISPRDATSCSEASQSSAEDSDEELAKLE
MIRATRRSSRTSNPIQRFDPSHVPETSVFGPVRVRSNGNTDFFRNPDTYL
AKLIRERNAREKEEGQLQQMREDIEKPTQALQDEEMFATMAKSEQESEEK
RLAAIEKYSAPVSLFSNPFTITRIPEKYLVRGISRKEVAENSIGTIHDML
VDVVNAGEEGDRALSILLPTLAAKTYHGLGKHSHVYRIVYFHAIFDQSMP
NSPRKPRDELIDALICMVENALPKFRSMEIKLPTFMNTLHRYGATMGDWT
LPEQVGDDAPQEGSLESQIPSPEEPSVSDDFKRALRNLKRACRLTAAFVR
LGIPLTRAIGVRRDTTPKEVLCSLGLLVRILLSAFGNRLYREVGEIITEL
LNLIPNTDWPQFRLEAAKYLLSVSNRLELHVELVAHLIPQKFERSRYLAL
DLGFLSLAQWCRGPANDPAPHPVCDYQPSQQAMSVGLKTRSYCLADVVHK
LKLLPEIDKNTDCVWAWLISYQMRLVLSEPALFQKRDPAELLDLNNVVQR
LRTCTNRLAFDVPVQDMRIELDTLVSTYRAFGSNSRDSMAALLPNLRVEK
KQETLSFAKKT*

spliced messenger RNA

>Gcaud3498.t1 ID=Gcaud3498.t1|Name=Gcaud3498.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2286bp|location=Sequence derived from alignment at NODE_436_length_25374_cov_4.383380:18203..20550+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCTCGACGAAGACGCTGTTCAACTCGTACCACGCACAAGCAGAG
TTCGATTTCTGATTTCTTTACGCGGAAGCGGGATTCTCCTTCTCCGACAC
CATCTGCGCAGCTTTCGAATGCACCGCGACGTGCCATTCGACGACGGCAT
CGAAGAGCTTCCAGTATTGTTCAATCTTCCCTCGCTGTCAAGCAGGAGTC
ACTTCCAAGAAATGTTAAACGAATCACTGCCGATACTGCAGCTGTACAAA
ATGCCTTGAAGTTAGACGCTCAATTCAAATCAACTGTCAAGCACGCTGTC
TCAAAAGAAGAACAAACCCCTACACCCATCATGCATTCGCGGTCACAGCC
AAAATCAAGTCGTTCCCGTGCCGCCAGGGCACAAGACCACGCAATCATAC
AACCTATGGATGTAGATGATTCCCCGCCACCGCTTACCAAAGAGGAGTTG
TTAGTGGAAGAGGCGTTGCGTTCCTTAGAGTGTTCACAAGATGTGCCTCA
ACCTCAACCCCAAAACATATCGCCTCGGGATGCGACATCCTGTTCTGAAG
CATCTCAATCTTCTGCTGAAGACAGCGATGAAGAACTAGCCAAGCTCGAG
ATGATCCGCGCCACAAGGAGATCAAGTCGCACATCCAACCCAATACAACG
ATTCGACCCCTCACATGTCCCAGAGACAAGCGTTTTCGGTCCCGTTCGCG
TTCGCTCGAACGGAAACACTGATTTCTTCCGCAATCCAGATACATACCTG
GCAAAACTAATCAGAGAGAGAAACGCGAGAGAGAAGGAGGAAGGTCAACT
GCAGCAGATGAGAGAGGACATTGAGAAACCAACACAGGCATTACAGGATG
AGGAGATGTTTGCTACCATGGCGAAGTCCGAACAGGAGTCTGAGGAAAAG
CGTCTTGCCGCAATCGAAAAGTACTCAGCCCCTGTGTCGCTATTCAGCAA
TCCATTTACTATTACTCGAATCCCTGAAAAGTACCTTGTCAGAGGCATTT
CCAGAAAGGAAGTGGCTGAGAACTCAATTGGTACAATTCATGATATGCTG
GTGGACGTCGTTAACGCGGGCGAAGAGGGAGATCGAGCGCTATCGATATT
GTTGCCCACTTTAGCAGCGAAAACGTATCATGGACTTGGGAAACATTCTC
ACGTTTACCGCATAGTGTACTTCCATGCGATTTTTGATCAGAGTATGCCC
AACTCTCCACGAAAGCCACGCGACGAGCTTATTGATGCTCTCATTTGCAT
GGTTGAGAACGCATTGCCGAAGTTCAGATCTATGGAGATCAAGCTTCCCA
CTTTTATGAACACACTGCACAGGTACGGCGCTACCATGGGAGATTGGACC
CTACCAGAGCAGGTCGGCGATGACGCACCTCAGGAAGGATCTCTTGAGAG
CCAAATACCTTCCCCTGAGGAGCCGAGTGTTTCAGATGACTTCAAGCGAG
CTTTACGAAACCTAAAGCGAGCATGCAGATTAACAGCTGCATTTGTGCGT
CTTGGAATTCCACTGACCCGAGCGATTGGTGTCAGAAGAGATACGACACC
CAAGGAGGTCCTTTGCTCTCTGGGCTTGCTGGTTCGCATCCTTTTGAGTG
CCTTCGGGAATCGACTTTATCGTGAGGTCGGAGAGATCATCACTGAACTT
CTGAATCTCATTCCCAACACAGATTGGCCGCAATTCCGTCTCGAAGCTGC
TAAGTATTTGCTTTCGGTTAGCAACCGCCTTGAGCTTCATGTAGAGTTGG
TTGCACATCTTATCCCGCAAAAGTTTGAAAGATCGCGGTACTTGGCTTTG
GACTTAGGGTTCCTTTCACTTGCACAATGGTGTCGCGGTCCAGCTAATGA
CCCTGCTCCACATCCTGTTTGCGACTATCAACCAAGTCAACAAGCAATGA
GTGTTGGACTGAAAACACGGTCGTATTGCCTTGCTGATGTTGTTCATAAG
CTCAAACTTCTGCCAGAGATTGATAAGAACACTGACTGTGTCTGGGCTTG
GTTAATATCGTATCAGATGCGACTTGTGCTTTCAGAGCCGGCATTGTTTC
AGAAGCGCGACCCCGCCGAGCTTTTGGATCTGAATAATGTTGTGCAGAGG
CTGCGAACATGCACTAATCGGCTAGCTTTTGACGTTCCAGTTCAAGACAT
GCGAATAGAGCTCGATACGCTAGTGAGCACGTATCGAGCTTTTGGATCGA
ATTCTCGCGACAGCATGGCTGCCCTCTTACCCAACCTCAGGGTGGAGAAG
AAACAAGAGACTTTGAGCTTTGCGAAGAAGACGTAA

protein sequence of Gcaud3498.t1

>Gcaud3498.t1 ID=Gcaud3498.t1|Name=Gcaud3498.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=762bp
MAPRRRRCSTRTTHKQSSISDFFTRKRDSPSPTPSAQLSNAPRRAIRRRH
RRASSIVQSSLAVKQESLPRNVKRITADTAAVQNALKLDAQFKSTVKHAV
SKEEQTPTPIMHSRSQPKSSRSRAARAQDHAIIQPMDVDDSPPPLTKEEL
LVEEALRSLECSQDVPQPQPQNISPRDATSCSEASQSSAEDSDEELAKLE
MIRATRRSSRTSNPIQRFDPSHVPETSVFGPVRVRSNGNTDFFRNPDTYL
AKLIRERNAREKEEGQLQQMREDIEKPTQALQDEEMFATMAKSEQESEEK
RLAAIEKYSAPVSLFSNPFTITRIPEKYLVRGISRKEVAENSIGTIHDML
VDVVNAGEEGDRALSILLPTLAAKTYHGLGKHSHVYRIVYFHAIFDQSMP
NSPRKPRDELIDALICMVENALPKFRSMEIKLPTFMNTLHRYGATMGDWT
LPEQVGDDAPQEGSLESQIPSPEEPSVSDDFKRALRNLKRACRLTAAFVR
LGIPLTRAIGVRRDTTPKEVLCSLGLLVRILLSAFGNRLYREVGEIITEL
LNLIPNTDWPQFRLEAAKYLLSVSNRLELHVELVAHLIPQKFERSRYLAL
DLGFLSLAQWCRGPANDPAPHPVCDYQPSQQAMSVGLKTRSYCLADVVHK
LKLLPEIDKNTDCVWAWLISYQMRLVLSEPALFQKRDPAELLDLNNVVQR
LRTCTNRLAFDVPVQDMRIELDTLVSTYRAFGSNSRDSMAALLPNLRVEK
KQETLSFAKKT*

mRNA from alignment at NODE_436_length_25374_cov_4.383380:18203..20550+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3498.t1 ID=Gcaud3498.t1|Name=Gcaud3498.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2348bp|location=Sequence derived from alignment at NODE_436_length_25374_cov_4.383380:18203..20550+ (Gracilaria caudata M_176_S67 male)
ATGGCGCCTCGACGAAGACGCTGTTCAACTCGTACCACGCAGTAAGTGGC
CTGTCCGCCAATTTTTGTTGTTTGCCTTCACGTCGTTCTAACTGTTTTCT
TAGCAAGCAGAGTTCGATTTCTGATTTCTTTACGCGGAAGCGGGATTCTC
CTTCTCCGACACCATCTGCGCAGCTTTCGAATGCACCGCGACGTGCCATT
CGACGACGGCATCGAAGAGCTTCCAGTATTGTTCAATCTTCCCTCGCTGT
CAAGCAGGAGTCACTTCCAAGAAATGTTAAACGAATCACTGCCGATACTG
CAGCTGTACAAAATGCCTTGAAGTTAGACGCTCAATTCAAATCAACTGTC
AAGCACGCTGTCTCAAAAGAAGAACAAACCCCTACACCCATCATGCATTC
GCGGTCACAGCCAAAATCAAGTCGTTCCCGTGCCGCCAGGGCACAAGACC
ACGCAATCATACAACCTATGGATGTAGATGATTCCCCGCCACCGCTTACC
AAAGAGGAGTTGTTAGTGGAAGAGGCGTTGCGTTCCTTAGAGTGTTCACA
AGATGTGCCTCAACCTCAACCCCAAAACATATCGCCTCGGGATGCGACAT
CCTGTTCTGAAGCATCTCAATCTTCTGCTGAAGACAGCGATGAAGAACTA
GCCAAGCTCGAGATGATCCGCGCCACAAGGAGATCAAGTCGCACATCCAA
CCCAATACAACGATTCGACCCCTCACATGTCCCAGAGACAAGCGTTTTCG
GTCCCGTTCGCGTTCGCTCGAACGGAAACACTGATTTCTTCCGCAATCCA
GATACATACCTGGCAAAACTAATCAGAGAGAGAAACGCGAGAGAGAAGGA
GGAAGGTCAACTGCAGCAGATGAGAGAGGACATTGAGAAACCAACACAGG
CATTACAGGATGAGGAGATGTTTGCTACCATGGCGAAGTCCGAACAGGAG
TCTGAGGAAAAGCGTCTTGCCGCAATCGAAAAGTACTCAGCCCCTGTGTC
GCTATTCAGCAATCCATTTACTATTACTCGAATCCCTGAAAAGTACCTTG
TCAGAGGCATTTCCAGAAAGGAAGTGGCTGAGAACTCAATTGGTACAATT
CATGATATGCTGGTGGACGTCGTTAACGCGGGCGAAGAGGGAGATCGAGC
GCTATCGATATTGTTGCCCACTTTAGCAGCGAAAACGTATCATGGACTTG
GGAAACATTCTCACGTTTACCGCATAGTGTACTTCCATGCGATTTTTGAT
CAGAGTATGCCCAACTCTCCACGAAAGCCACGCGACGAGCTTATTGATGC
TCTCATTTGCATGGTTGAGAACGCATTGCCGAAGTTCAGATCTATGGAGA
TCAAGCTTCCCACTTTTATGAACACACTGCACAGGTACGGCGCTACCATG
GGAGATTGGACCCTACCAGAGCAGGTCGGCGATGACGCACCTCAGGAAGG
ATCTCTTGAGAGCCAAATACCTTCCCCTGAGGAGCCGAGTGTTTCAGATG
ACTTCAAGCGAGCTTTACGAAACCTAAAGCGAGCATGCAGATTAACAGCT
GCATTTGTGCGTCTTGGAATTCCACTGACCCGAGCGATTGGTGTCAGAAG
AGATACGACACCCAAGGAGGTCCTTTGCTCTCTGGGCTTGCTGGTTCGCA
TCCTTTTGAGTGCCTTCGGGAATCGACTTTATCGTGAGGTCGGAGAGATC
ATCACTGAACTTCTGAATCTCATTCCCAACACAGATTGGCCGCAATTCCG
TCTCGAAGCTGCTAAGTATTTGCTTTCGGTTAGCAACCGCCTTGAGCTTC
ATGTAGAGTTGGTTGCACATCTTATCCCGCAAAAGTTTGAAAGATCGCGG
TACTTGGCTTTGGACTTAGGGTTCCTTTCACTTGCACAATGGTGTCGCGG
TCCAGCTAATGACCCTGCTCCACATCCTGTTTGCGACTATCAACCAAGTC
AACAAGCAATGAGTGTTGGACTGAAAACACGGTCGTATTGCCTTGCTGAT
GTTGTTCATAAGCTCAAACTTCTGCCAGAGATTGATAAGAACACTGACTG
TGTCTGGGCTTGGTTAATATCGTATCAGATGCGACTTGTGCTTTCAGAGC
CGGCATTGTTTCAGAAGCGCGACCCCGCCGAGCTTTTGGATCTGAATAAT
GTTGTGCAGAGGCTGCGAACATGCACTAATCGGCTAGCTTTTGACGTTCC
AGTTCAAGACATGCGAATAGAGCTCGATACGCTAGTGAGCACGTATCGAG
CTTTTGGATCGAATTCTCGCGACAGCATGGCTGCCCTCTTACCCAACCTC
AGGGTGGAGAAGAAACAAGAGACTTTGAGCTTTGCGAAGAAGACGTAA

Coding sequence (CDS) from alignment at NODE_436_length_25374_cov_4.383380:18203..20550+

>Gcaud3498.t1 ID=Gcaud3498.t1|Name=Gcaud3498.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2286bp|location=Sequence derived from alignment at NODE_436_length_25374_cov_4.383380:18203..20550+ (Gracilaria caudata M_176_S67 male)
ATGGCGCCTCGACGAAGACGCTGTTCAACTCGTACCACGCACAAGCAGAG
TTCGATTTCTGATTTCTTTACGCGGAAGCGGGATTCTCCTTCTCCGACAC
CATCTGCGCAGCTTTCGAATGCACCGCGACGTGCCATTCGACGACGGCAT
CGAAGAGCTTCCAGTATTGTTCAATCTTCCCTCGCTGTCAAGCAGGAGTC
ACTTCCAAGAAATGTTAAACGAATCACTGCCGATACTGCAGCTGTACAAA
ATGCCTTGAAGTTAGACGCTCAATTCAAATCAACTGTCAAGCACGCTGTC
TCAAAAGAAGAACAAACCCCTACACCCATCATGCATTCGCGGTCACAGCC
AAAATCAAGTCGTTCCCGTGCCGCCAGGGCACAAGACCACGCAATCATAC
AACCTATGGATGTAGATGATTCCCCGCCACCGCTTACCAAAGAGGAGTTG
TTAGTGGAAGAGGCGTTGCGTTCCTTAGAGTGTTCACAAGATGTGCCTCA
ACCTCAACCCCAAAACATATCGCCTCGGGATGCGACATCCTGTTCTGAAG
CATCTCAATCTTCTGCTGAAGACAGCGATGAAGAACTAGCCAAGCTCGAG
ATGATCCGCGCCACAAGGAGATCAAGTCGCACATCCAACCCAATACAACG
ATTCGACCCCTCACATGTCCCAGAGACAAGCGTTTTCGGTCCCGTTCGCG
TTCGCTCGAACGGAAACACTGATTTCTTCCGCAATCCAGATACATACCTG
GCAAAACTAATCAGAGAGAGAAACGCGAGAGAGAAGGAGGAAGGTCAACT
GCAGCAGATGAGAGAGGACATTGAGAAACCAACACAGGCATTACAGGATG
AGGAGATGTTTGCTACCATGGCGAAGTCCGAACAGGAGTCTGAGGAAAAG
CGTCTTGCCGCAATCGAAAAGTACTCAGCCCCTGTGTCGCTATTCAGCAA
TCCATTTACTATTACTCGAATCCCTGAAAAGTACCTTGTCAGAGGCATTT
CCAGAAAGGAAGTGGCTGAGAACTCAATTGGTACAATTCATGATATGCTG
GTGGACGTCGTTAACGCGGGCGAAGAGGGAGATCGAGCGCTATCGATATT
GTTGCCCACTTTAGCAGCGAAAACGTATCATGGACTTGGGAAACATTCTC
ACGTTTACCGCATAGTGTACTTCCATGCGATTTTTGATCAGAGTATGCCC
AACTCTCCACGAAAGCCACGCGACGAGCTTATTGATGCTCTCATTTGCAT
GGTTGAGAACGCATTGCCGAAGTTCAGATCTATGGAGATCAAGCTTCCCA
CTTTTATGAACACACTGCACAGGTACGGCGCTACCATGGGAGATTGGACC
CTACCAGAGCAGGTCGGCGATGACGCACCTCAGGAAGGATCTCTTGAGAG
CCAAATACCTTCCCCTGAGGAGCCGAGTGTTTCAGATGACTTCAAGCGAG
CTTTACGAAACCTAAAGCGAGCATGCAGATTAACAGCTGCATTTGTGCGT
CTTGGAATTCCACTGACCCGAGCGATTGGTGTCAGAAGAGATACGACACC
CAAGGAGGTCCTTTGCTCTCTGGGCTTGCTGGTTCGCATCCTTTTGAGTG
CCTTCGGGAATCGACTTTATCGTGAGGTCGGAGAGATCATCACTGAACTT
CTGAATCTCATTCCCAACACAGATTGGCCGCAATTCCGTCTCGAAGCTGC
TAAGTATTTGCTTTCGGTTAGCAACCGCCTTGAGCTTCATGTAGAGTTGG
TTGCACATCTTATCCCGCAAAAGTTTGAAAGATCGCGGTACTTGGCTTTG
GACTTAGGGTTCCTTTCACTTGCACAATGGTGTCGCGGTCCAGCTAATGA
CCCTGCTCCACATCCTGTTTGCGACTATCAACCAAGTCAACAAGCAATGA
GTGTTGGACTGAAAACACGGTCGTATTGCCTTGCTGATGTTGTTCATAAG
CTCAAACTTCTGCCAGAGATTGATAAGAACACTGACTGTGTCTGGGCTTG
GTTAATATCGTATCAGATGCGACTTGTGCTTTCAGAGCCGGCATTGTTTC
AGAAGCGCGACCCCGCCGAGCTTTTGGATCTGAATAATGTTGTGCAGAGG
CTGCGAACATGCACTAATCGGCTAGCTTTTGACGTTCCAGTTCAAGACAT
GCGAATAGAGCTCGATACGCTAGTGAGCACGTATCGAGCTTTTGGATCGA
ATTCTCGCGACAGCATGGCTGCCCTCTTACCCAACCTCAGGGTGGAGAAG
AAACAAGAGACTTTGAGCTTTGCGAAGAAGACGTAA