Gcaud3487.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3487.t1
Unique NameGcaud3487.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length297
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_968_length_15659_cov_4.393885contigNODE_968_length_15659_cov_4.393885:5019..6162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706768.1
Preferred nameRPL5
PFAMsRibosomal_L18_c,Ribosomal_L5e
Max annot lvl2759|Eukaryota
KEGG koko:K02932
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue5.55e-120
EggNOG OGsCOG0256@1|root,KOG0875@2759|Eukaryota
Description5S rRNA binding
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01009,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3487Gcaud3487Gracilaria caudata M_176_S67 malegeneNODE_968_length_15659_cov_4.393885 5019..6162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3487.t1Gcaud3487.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_968_length_15659_cov_4.393885 5019..6162 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3487.t1.start1Gcaud3487.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_968_length_15659_cov_4.393885 5019..5021 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3487.t1.CDS1Gcaud3487.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_968_length_15659_cov_4.393885 5019..5191 +
Gcaud3487.t1.CDS2Gcaud3487.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_968_length_15659_cov_4.393885 5445..6162 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3487.t1.exon1Gcaud3487.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_968_length_15659_cov_4.393885 5019..5191 +
Gcaud3487.t1.exon2Gcaud3487.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_968_length_15659_cov_4.393885 5445..6162 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3487.t1.intron1Gcaud3487.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_968_length_15659_cov_4.393885 5192..5444 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3487.t1.stop1Gcaud3487.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_968_length_15659_cov_4.393885 6160..6162 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3487.t1 ID=Gcaud3487.t1|Name=Gcaud3487.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=297bp
MARAKFIKNKAYLKRYQTKFRRRREGKTDFQARRRLITQDKRKYNSPKYR
LVVRFTNRDIICQVVAARLAGDEVLTAAYAHELPRYGIKHGLTNFSAAYC
VGLLCARRHLQKLGLDETYVGIEEVDGEMFEIEEDDDRRPFTALLDIGLV
NTSTGNKVFAVMKGAVDGGMNVPHNEKRFPAYSKEEGFDPELLKTRILGN
HVSEYMEYLLEEDEDAYQKQFAKYIEDGIDADAIEDLYLEAHKKIREDPS
FTKKEKPEGVKHNTTWRLSKRTKEERQQAVKEKLAAVIAAAAGGEQ*
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spliced messenger RNA

>Gcaud3487.t1 ID=Gcaud3487.t1|Name=Gcaud3487.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=891bp|location=Sequence derived from alignment at NODE_968_length_15659_cov_4.393885:5019..6162+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGCGCGAAGTTTATCAAGAACAAAGCTTACTTGAAGCGTTACCA
GACCAAGTTCCGTCGCCGCCGAGAGGGAAAGACCGATTTTCAGGCGAGAC
GCCGCCTGATCACACAGGACAAGCGCAAGTACAACTCACCGAAGTACAGG
CTCGTGGTTCGATTCACCAACAGAGACATCATATGTCAAGTCGTGGCCGC
TCGTTTGGCTGGAGATGAGGTTCTCACCGCTGCCTACGCTCACGAACTTC
CGCGATATGGCATCAAGCACGGACTCACGAACTTCTCGGCAGCTTATTGC
GTAGGCCTGCTGTGCGCCCGTCGTCATCTTCAGAAGCTTGGTCTTGACGA
GACGTACGTGGGTATTGAAGAGGTTGATGGAGAGATGTTTGAGATCGAGG
AGGATGACGATCGTCGCCCGTTCACCGCACTTCTTGATATTGGATTGGTC
AACACCAGTACCGGAAACAAGGTTTTCGCCGTCATGAAGGGCGCTGTTGA
TGGTGGAATGAATGTCCCTCATAACGAAAAGCGCTTCCCCGCATATTCCA
AGGAGGAAGGCTTCGATCCCGAGCTTTTGAAGACTCGTATTTTGGGTAAC
CACGTATCCGAATATATGGAGTACCTTCTTGAGGAAGATGAAGACGCTTA
TCAGAAGCAATTCGCGAAGTACATCGAGGACGGAATCGATGCTGATGCTA
TTGAGGACCTTTATCTTGAGGCCCACAAAAAGATCCGGGAAGACCCGAGC
TTCACCAAGAAGGAGAAGCCAGAGGGTGTTAAGCACAATACTACATGGAG
GTTGTCGAAGCGTACGAAGGAAGAACGTCAGCAGGCTGTCAAGGAAAAGC
TGGCCGCTGTTATTGCTGCAGCGGCTGGTGGAGAGCAGTAG
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protein sequence of Gcaud3487.t1

>Gcaud3487.t1 ID=Gcaud3487.t1|Name=Gcaud3487.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=297bp
MARAKFIKNKAYLKRYQTKFRRRREGKTDFQARRRLITQDKRKYNSPKYR
LVVRFTNRDIICQVVAARLAGDEVLTAAYAHELPRYGIKHGLTNFSAAYC
VGLLCARRHLQKLGLDETYVGIEEVDGEMFEIEEDDDRRPFTALLDIGLV
NTSTGNKVFAVMKGAVDGGMNVPHNEKRFPAYSKEEGFDPELLKTRILGN
HVSEYMEYLLEEDEDAYQKQFAKYIEDGIDADAIEDLYLEAHKKIREDPS
FTKKEKPEGVKHNTTWRLSKRTKEERQQAVKEKLAAVIAAAAGGEQ*
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mRNA from alignment at NODE_968_length_15659_cov_4.393885:5019..6162+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3487.t1 ID=Gcaud3487.t1|Name=Gcaud3487.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1144bp|location=Sequence derived from alignment at NODE_968_length_15659_cov_4.393885:5019..6162+ (Gracilaria caudata M_176_S67 male)
ATGGCGCGCGCGAAGTTTATCAAGAACAAAGCTTACTTGAAGCGTTACCA
GACCAAGTTCCGTCGCCGCCGAGAGGGAAAGACCGATTTTCAGGCGAGAC
GCCGCCTGATCACACAGGACAAGCGCAAGTACAACTCACCGAAGTACAGG
CTCGTGGTTCGATTCACCAACAGGTCAGTTCTTCACTTTCTCCATCCATA
GTCGTTCGTAGGGCGATCCACATATGCGGAACGCCGCTTCGTTGCAGCGC
CACAGGCATCGATAGGTGTTCTTCACTCAGGTCCCTTGTACATGCGGTGC
TTCTTCTATGTCGTGCCTATCGCGCCAATTGTACACAATCAAGCGAAACC
GAGTGCCTCGGATCTTCGCAGTACGATGTGGCAACCATGCTGACGTTTAC
CCGTTATACATTTTCAACATCAACAGAGACATCATATGTCAAGTCGTGGC
CGCTCGTTTGGCTGGAGATGAGGTTCTCACCGCTGCCTACGCTCACGAAC
TTCCGCGATATGGCATCAAGCACGGACTCACGAACTTCTCGGCAGCTTAT
TGCGTAGGCCTGCTGTGCGCCCGTCGTCATCTTCAGAAGCTTGGTCTTGA
CGAGACGTACGTGGGTATTGAAGAGGTTGATGGAGAGATGTTTGAGATCG
AGGAGGATGACGATCGTCGCCCGTTCACCGCACTTCTTGATATTGGATTG
GTCAACACCAGTACCGGAAACAAGGTTTTCGCCGTCATGAAGGGCGCTGT
TGATGGTGGAATGAATGTCCCTCATAACGAAAAGCGCTTCCCCGCATATT
CCAAGGAGGAAGGCTTCGATCCCGAGCTTTTGAAGACTCGTATTTTGGGT
AACCACGTATCCGAATATATGGAGTACCTTCTTGAGGAAGATGAAGACGC
TTATCAGAAGCAATTCGCGAAGTACATCGAGGACGGAATCGATGCTGATG
CTATTGAGGACCTTTATCTTGAGGCCCACAAAAAGATCCGGGAAGACCCG
AGCTTCACCAAGAAGGAGAAGCCAGAGGGTGTTAAGCACAATACTACATG
GAGGTTGTCGAAGCGTACGAAGGAAGAACGTCAGCAGGCTGTCAAGGAAA
AGCTGGCCGCTGTTATTGCTGCAGCGGCTGGTGGAGAGCAGTAG
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Coding sequence (CDS) from alignment at NODE_968_length_15659_cov_4.393885:5019..6162+

>Gcaud3487.t1 ID=Gcaud3487.t1|Name=Gcaud3487.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=891bp|location=Sequence derived from alignment at NODE_968_length_15659_cov_4.393885:5019..6162+ (Gracilaria caudata M_176_S67 male)
ATGGCGCGCGCGAAGTTTATCAAGAACAAAGCTTACTTGAAGCGTTACCA
GACCAAGTTCCGTCGCCGCCGAGAGGGAAAGACCGATTTTCAGGCGAGAC
GCCGCCTGATCACACAGGACAAGCGCAAGTACAACTCACCGAAGTACAGG
CTCGTGGTTCGATTCACCAACAGAGACATCATATGTCAAGTCGTGGCCGC
TCGTTTGGCTGGAGATGAGGTTCTCACCGCTGCCTACGCTCACGAACTTC
CGCGATATGGCATCAAGCACGGACTCACGAACTTCTCGGCAGCTTATTGC
GTAGGCCTGCTGTGCGCCCGTCGTCATCTTCAGAAGCTTGGTCTTGACGA
GACGTACGTGGGTATTGAAGAGGTTGATGGAGAGATGTTTGAGATCGAGG
AGGATGACGATCGTCGCCCGTTCACCGCACTTCTTGATATTGGATTGGTC
AACACCAGTACCGGAAACAAGGTTTTCGCCGTCATGAAGGGCGCTGTTGA
TGGTGGAATGAATGTCCCTCATAACGAAAAGCGCTTCCCCGCATATTCCA
AGGAGGAAGGCTTCGATCCCGAGCTTTTGAAGACTCGTATTTTGGGTAAC
CACGTATCCGAATATATGGAGTACCTTCTTGAGGAAGATGAAGACGCTTA
TCAGAAGCAATTCGCGAAGTACATCGAGGACGGAATCGATGCTGATGCTA
TTGAGGACCTTTATCTTGAGGCCCACAAAAAGATCCGGGAAGACCCGAGC
TTCACCAAGAAGGAGAAGCCAGAGGGTGTTAAGCACAATACTACATGGAG
GTTGTCGAAGCGTACGAAGGAAGAACGTCAGCAGGCTGTCAAGGAAAAGC
TGGCCGCTGTTATTGCTGCAGCGGCTGGTGGAGAGCAGTAG
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