Gcaud3476.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3476.t1
Unique NameGcaud3476.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length332
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_469_length_24516_cov_4.309601contigNODE_469_length_24516_cov_4.309601:8918..10169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708256.1
Preferred nameSCS-alpha
PFAMsCoA_binding,Ligase_CoA
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00014
KEGG koko:K01899
KEGG ReactionR00432,R00727
KEGG Pathwayko00020,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011
GOsGO:0003674,GO:0003824,GO:0004774,GO:0004775,GO:0004776,GO:0005488,GO:0005507,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006104,GO:0006105,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0010035,GO:0010038,GO:0015980,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0030312,GO:0031974,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046483,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0051186,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0071944,GO:0072350,GO:0072521,GO:1901135,GO:1901360,GO:1901564
Evalue7.91e-140
EggNOG OGsCOG0074@1|root,KOG1255@2759|Eukaryota
EC6.2.1.4,6.2.1.5
Descriptionsuccinate-CoA ligase (GDP-forming) activity
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3476Gcaud3476Gracilaria caudata M_176_S67 malegeneNODE_469_length_24516_cov_4.309601 8918..10169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3476.t1Gcaud3476.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_469_length_24516_cov_4.309601 8918..10169 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3476.t1.start1Gcaud3476.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_469_length_24516_cov_4.309601 8918..8920 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3476.t1.CDS1Gcaud3476.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_469_length_24516_cov_4.309601 8918..9778 +
Gcaud3476.t1.CDS2Gcaud3476.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_469_length_24516_cov_4.309601 9866..9936 +
Gcaud3476.t1.CDS3Gcaud3476.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_469_length_24516_cov_4.309601 10026..10048 +
Gcaud3476.t1.CDS4Gcaud3476.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_469_length_24516_cov_4.309601 10129..10169 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3476.t1.exon1Gcaud3476.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_469_length_24516_cov_4.309601 8918..9778 +
Gcaud3476.t1.exon2Gcaud3476.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_469_length_24516_cov_4.309601 9866..9936 +
Gcaud3476.t1.exon3Gcaud3476.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_469_length_24516_cov_4.309601 10026..10048 +
Gcaud3476.t1.exon4Gcaud3476.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_469_length_24516_cov_4.309601 10129..10169 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3476.t1.intron1Gcaud3476.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_469_length_24516_cov_4.309601 9779..9865 +
Gcaud3476.t1.intron2Gcaud3476.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_469_length_24516_cov_4.309601 9937..10025 +
Gcaud3476.t1.intron3Gcaud3476.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_469_length_24516_cov_4.309601 10049..10128 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3476.t1.stop1Gcaud3476.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_469_length_24516_cov_4.309601 10167..10169 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3476.t1 ID=Gcaud3476.t1|Name=Gcaud3476.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=332bp
MASPALRAFSSRPAPYVSAATRVLFQGFTGKQGTFHAEQAIAYGTNIVGG
TNPKRAGQRHLDRPVFATVSEARAQTSADASAIFVPPAGAAAAIEEAIVA
EMPLVVCITEGIPQKDMVRVKGLLRDATATRLIGPNCPGIIKPDQCKIGI
MPGHIHKPGSIGVVSRSGTLTYEAVNQTTEVGLGQSICIGIGGDPFNGTD
FIDCIDMFLNDEETKGIVMIGEIGGQAEEQAAEYLKQHPVKKPVVSFIAG
VTAPPGRRMGHAGAIISGGKGTAADKIAALEAAGARVCFSSTAAMYLLSY
AIRSHLGRSEVEECLTAIGLEYVLRNAEEMR*
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spliced messenger RNA

>Gcaud3476.t1 ID=Gcaud3476.t1|Name=Gcaud3476.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=996bp|location=Sequence derived from alignment at NODE_469_length_24516_cov_4.309601:8918..10169+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCCCCCGCTCTCAGAGCCTTCTCATCCAGGCCCGCTCCCTACGT
CTCAGCCGCCACACGCGTTCTTTTCCAAGGTTTCACCGGCAAACAAGGCA
CCTTTCATGCCGAGCAAGCTATTGCCTACGGCACCAACATCGTCGGTGGA
ACCAACCCTAAACGAGCCGGACAACGTCATTTAGATCGTCCCGTGTTTGC
AACTGTCTCAGAGGCACGAGCCCAAACTTCTGCCGATGCTTCTGCCATTT
TCGTACCGCCTGCCGGCGCAGCTGCTGCCATTGAGGAAGCCATTGTTGCG
GAGATGCCTCTGGTGGTTTGTATCACTGAGGGAATTCCACAGAAAGATAT
GGTTCGAGTAAAGGGACTTTTGAGAGACGCTACTGCTACTCGTCTTATCG
GTCCCAATTGTCCCGGCATTATCAAGCCCGATCAGTGTAAGATCGGTATC
ATGCCTGGACACATTCATAAACCAGGCTCTATTGGCGTCGTATCCAGATC
AGGAACCCTCACATATGAGGCCGTAAATCAGACCACGGAGGTCGGTCTTG
GCCAGAGTATTTGCATTGGAATCGGTGGCGATCCTTTTAATGGCACCGAT
TTCATTGACTGTATTGACATGTTTCTCAACGACGAGGAGACAAAGGGCAT
CGTTATGATCGGCGAAATTGGTGGACAGGCTGAGGAACAAGCCGCTGAAT
ATCTCAAACAGCACCCTGTGAAGAAACCTGTTGTATCTTTTATAGCCGGT
GTCACCGCGCCTCCTGGAAGACGTATGGGACATGCGGGAGCCATTATTTC
CGGCGGTAAGGGTACTGCTGCTGATAAGATTGCTGCGTTGGAAGCGGCAG
GTGCTAGAGTTTGTTTTAGTTCTACTGCGGCGATGTACCTTCTTTCCTAT
GCGATTCGTTCGCATTTGGGTAGAAGCGAAGTTGAAGAGTGTCTAACCGC
CATAGGATTAGAATATGTACTTCGAAACGCAGAAGAGATGAGGTGA
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protein sequence of Gcaud3476.t1

>Gcaud3476.t1 ID=Gcaud3476.t1|Name=Gcaud3476.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=332bp
MASPALRAFSSRPAPYVSAATRVLFQGFTGKQGTFHAEQAIAYGTNIVGG
TNPKRAGQRHLDRPVFATVSEARAQTSADASAIFVPPAGAAAAIEEAIVA
EMPLVVCITEGIPQKDMVRVKGLLRDATATRLIGPNCPGIIKPDQCKIGI
MPGHIHKPGSIGVVSRSGTLTYEAVNQTTEVGLGQSICIGIGGDPFNGTD
FIDCIDMFLNDEETKGIVMIGEIGGQAEEQAAEYLKQHPVKKPVVSFIAG
VTAPPGRRMGHAGAIISGGKGTAADKIAALEAAGARVCFSSTAAMYLLSY
AIRSHLGRSEVEECLTAIGLEYVLRNAEEMR*
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mRNA from alignment at NODE_469_length_24516_cov_4.309601:8918..10169+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3476.t1 ID=Gcaud3476.t1|Name=Gcaud3476.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1252bp|location=Sequence derived from alignment at NODE_469_length_24516_cov_4.309601:8918..10169+ (Gracilaria caudata M_176_S67 male)
ATGGCATCCCCCGCTCTCAGAGCCTTCTCATCCAGGCCCGCTCCCTACGT
CTCAGCCGCCACACGCGTTCTTTTCCAAGGTTTCACCGGCAAACAAGGCA
CCTTTCATGCCGAGCAAGCTATTGCCTACGGCACCAACATCGTCGGTGGA
ACCAACCCTAAACGAGCCGGACAACGTCATTTAGATCGTCCCGTGTTTGC
AACTGTCTCAGAGGCACGAGCCCAAACTTCTGCCGATGCTTCTGCCATTT
TCGTACCGCCTGCCGGCGCAGCTGCTGCCATTGAGGAAGCCATTGTTGCG
GAGATGCCTCTGGTGGTTTGTATCACTGAGGGAATTCCACAGAAAGATAT
GGTTCGAGTAAAGGGACTTTTGAGAGACGCTACTGCTACTCGTCTTATCG
GTCCCAATTGTCCCGGCATTATCAAGCCCGATCAGTGTAAGATCGGTATC
ATGCCTGGACACATTCATAAACCAGGCTCTATTGGCGTCGTATCCAGATC
AGGAACCCTCACATATGAGGCCGTAAATCAGACCACGGAGGTCGGTCTTG
GCCAGAGTATTTGCATTGGAATCGGTGGCGATCCTTTTAATGGCACCGAT
TTCATTGACTGTATTGACATGTTTCTCAACGACGAGGAGACAAAGGGCAT
CGTTATGATCGGCGAAATTGGTGGACAGGCTGAGGAACAAGCCGCTGAAT
ATCTCAAACAGCACCCTGTGAAGAAACCTGTTGTATCTTTTATAGCCGGT
GTCACCGCGCCTCCTGGAAGACGTATGGGACATGCGGGAGCCATTATTTC
CGGCGGTAAGGGTACTGCTGCTGATAAGATTGCTGCGTTGGAAGCGGCAG
GTGCTAGAGTTGTTCGCAGTCCTGCAACGCTTGGCACTGCCATGCTGGAA
GAGATGCAGAACGCTGGCTTGGCTTGATTGCATTTCTGCATCTTCAAGTG
TTTTAGTTCTACTGCGGCGATGTACCTTCTTTCCTATGCGATTCGTTCGC
ATTTGGGTAGAAGCGAAGTGTGTACATAGTGACACCATCCAGTTGCACTT
TCATTTGGGTTTTGAGCTCGCAGTCCCGAAAACCATGTTTCGCTCTCTGG
CTATGCAGTGAAGAGTGTCTAACCGCCATAGGTATCGTCAAGATCAAAAA
TGGGAAGGAATCCAGTGATTTGAAAGACGTTTCATGTCAATAACAACTAA
CGACTGTCTAGGATTAGAATATGTACTTCGAAACGCAGAAGAGATGAGGT
GA
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Coding sequence (CDS) from alignment at NODE_469_length_24516_cov_4.309601:8918..10169+

>Gcaud3476.t1 ID=Gcaud3476.t1|Name=Gcaud3476.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=996bp|location=Sequence derived from alignment at NODE_469_length_24516_cov_4.309601:8918..10169+ (Gracilaria caudata M_176_S67 male)
ATGGCATCCCCCGCTCTCAGAGCCTTCTCATCCAGGCCCGCTCCCTACGT
CTCAGCCGCCACACGCGTTCTTTTCCAAGGTTTCACCGGCAAACAAGGCA
CCTTTCATGCCGAGCAAGCTATTGCCTACGGCACCAACATCGTCGGTGGA
ACCAACCCTAAACGAGCCGGACAACGTCATTTAGATCGTCCCGTGTTTGC
AACTGTCTCAGAGGCACGAGCCCAAACTTCTGCCGATGCTTCTGCCATTT
TCGTACCGCCTGCCGGCGCAGCTGCTGCCATTGAGGAAGCCATTGTTGCG
GAGATGCCTCTGGTGGTTTGTATCACTGAGGGAATTCCACAGAAAGATAT
GGTTCGAGTAAAGGGACTTTTGAGAGACGCTACTGCTACTCGTCTTATCG
GTCCCAATTGTCCCGGCATTATCAAGCCCGATCAGTGTAAGATCGGTATC
ATGCCTGGACACATTCATAAACCAGGCTCTATTGGCGTCGTATCCAGATC
AGGAACCCTCACATATGAGGCCGTAAATCAGACCACGGAGGTCGGTCTTG
GCCAGAGTATTTGCATTGGAATCGGTGGCGATCCTTTTAATGGCACCGAT
TTCATTGACTGTATTGACATGTTTCTCAACGACGAGGAGACAAAGGGCAT
CGTTATGATCGGCGAAATTGGTGGACAGGCTGAGGAACAAGCCGCTGAAT
ATCTCAAACAGCACCCTGTGAAGAAACCTGTTGTATCTTTTATAGCCGGT
GTCACCGCGCCTCCTGGAAGACGTATGGGACATGCGGGAGCCATTATTTC
CGGCGGTAAGGGTACTGCTGCTGATAAGATTGCTGCGTTGGAAGCGGCAG
GTGCTAGAGTTTGTTTTAGTTCTACTGCGGCGATGTACCTTCTTTCCTAT
GCGATTCGTTCGCATTTGGGTAGAAGCGAAGTTGAAGAGTGTCTAACCGC
CATAGGATTAGAATATGTACTTCGAAACGCAGAAGAGATGAGGTGA
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