Gcaud3460.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3460.t1
Unique Name	Gcaud3460.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	414

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_133_length_45383_cov_4.895280	contig	NODE_133_length_45383_cov_4.895280:16377..17618 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705449.1
Max annot lvl	2759\|Eukaryota
Evalue	1.44e-47
EggNOG OGs	2E1U7@1\|root,2S947@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3460	Gcaud3460	Gracilaria caudata M_176_S67 male	gene	NODE_133_length_45383_cov_4.895280 16377..17618 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3460.t1.stop1	Gcaud3460.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_133_length_45383_cov_4.895280 16377..16379 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3460.t1.CDS1	Gcaud3460.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_133_length_45383_cov_4.895280 16377..17618 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3460.t1.exon1	Gcaud3460.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_133_length_45383_cov_4.895280 16377..17618 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3460.t1.start1	Gcaud3460.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_133_length_45383_cov_4.895280 17616..17618 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3460.t1	Gcaud3460.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_133_length_45383_cov_4.895280 16377..17618 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_133_length_45383_cov_4.895280:16377..17618-
coding sequence from alignment at NODE_133_length_45383_cov_4.895280:16377..17618-

mRNA sequence

>Gcaud3460.t1 ID=Gcaud3460.t1|Name=Gcaud3460.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=414bp
MNRNGLPAAFSPAAPVLSRRHTATLHTSLSTRRRRSLIFSANRATRPVSC
SAEQHNESQLPTYHNAQHSKLPPSTIRVASARAISPMRRPDADRFTEMQP
LPSQRRTDLMAPKTVGFWSFVPYMAASAVMVGVAWLAKKRFAARQASLVD
EFGQVIVLYGNTPDAKREIASEYKRKLGPGILRGAMFASYLATLVAEKTI
VPSTIQEVAMVKKLLRVGDDKAVNAINKLAATMSDSPSLLGKLLFITERI
LSAEKVSGLQLVSLFPYSASTVADLQRNMLERCYRDFVTHEIEHNEVEEV
PLAAAAALRLDEADAKLLFDGVVKERVRRLEEEAAKAEAAEAEEASKPST
EDLDYPARSGEPAKATVHAYQCSDCGYTLFPAAGREFKFYGDDFVCPACG
APKDKFVDVNAEE*

spliced messenger RNA

>Gcaud3460.t1 ID=Gcaud3460.t1|Name=Gcaud3460.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at NODE_133_length_45383_cov_4.895280:16377..17618- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCGCAACGGGCTTCCCGCTGCGTTCTCGCCCGCGGCGCCGGTGCT
TTCGCGCAGACATACCGCCACTCTCCACACTTCCTTGTCTACGCGTCGCC
GTCGCTCGCTCATTTTTTCCGCAAATCGCGCCACTCGCCCGGTTTCTTGT
TCAGCTGAGCAGCACAATGAGTCTCAGCTCCCGACCTATCACAATGCCCA
ACATTCCAAACTGCCCCCTTCCACTATCCGCGTCGCCAGCGCGCGAGCTA
TCAGCCCTATGCGGCGTCCTGATGCAGATCGCTTCACTGAGATGCAACCT
CTTCCCTCTCAAAGACGCACTGACTTGATGGCACCGAAAACTGTAGGATT
TTGGTCCTTTGTGCCTTATATGGCTGCGTCAGCAGTCATGGTTGGTGTGG
CTTGGCTCGCAAAAAAACGCTTTGCAGCCCGCCAGGCCAGTCTTGTGGAC
GAATTTGGCCAGGTTATAGTTCTGTACGGGAACACTCCCGATGCAAAGCG
GGAGATTGCCTCGGAGTACAAACGGAAACTTGGACCGGGCATCTTACGTG
GCGCTATGTTTGCGTCTTATCTTGCCACGCTTGTTGCTGAAAAGACTATT
GTACCATCAACCATTCAAGAGGTGGCAATGGTTAAGAAACTCTTGCGTGT
TGGAGACGACAAGGCTGTCAACGCCATTAACAAATTGGCAGCAACTATGA
GTGACTCTCCGAGCTTGTTGGGCAAACTTCTGTTCATTACTGAAAGGATT
CTGAGTGCTGAAAAGGTTTCTGGGTTGCAACTTGTCTCATTGTTTCCCTA
CAGCGCATCCACCGTTGCCGATCTGCAAAGAAACATGCTCGAAAGGTGCT
ATCGCGACTTTGTCACACATGAAATCGAGCATAATGAAGTAGAAGAGGTG
CCGTTGGCTGCTGCTGCTGCGTTGCGGTTAGATGAAGCGGACGCGAAGCT
TCTTTTCGATGGAGTTGTAAAGGAAAGAGTCAGACGGCTTGAGGAGGAGG
CAGCTAAGGCGGAGGCGGCGGAAGCAGAGGAAGCTTCCAAACCCAGCACC
GAAGATCTTGATTACCCCGCGCGCTCTGGAGAACCGGCGAAGGCGACTGT
GCATGCATATCAATGCTCGGATTGCGGTTATACTCTGTTCCCTGCTGCTG
GGAGAGAGTTTAAATTTTACGGCGACGACTTTGTATGTCCGGCCTGTGGG
GCTCCAAAGGACAAATTTGTTGATGTAAATGCAGAAGAGTAG

protein sequence of Gcaud3460.t1

>Gcaud3460.t1 ID=Gcaud3460.t1|Name=Gcaud3460.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=414bp
MNRNGLPAAFSPAAPVLSRRHTATLHTSLSTRRRRSLIFSANRATRPVSC
SAEQHNESQLPTYHNAQHSKLPPSTIRVASARAISPMRRPDADRFTEMQP
LPSQRRTDLMAPKTVGFWSFVPYMAASAVMVGVAWLAKKRFAARQASLVD
EFGQVIVLYGNTPDAKREIASEYKRKLGPGILRGAMFASYLATLVAEKTI
VPSTIQEVAMVKKLLRVGDDKAVNAINKLAATMSDSPSLLGKLLFITERI
LSAEKVSGLQLVSLFPYSASTVADLQRNMLERCYRDFVTHEIEHNEVEEV
PLAAAAALRLDEADAKLLFDGVVKERVRRLEEEAAKAEAAEAEEASKPST
EDLDYPARSGEPAKATVHAYQCSDCGYTLFPAAGREFKFYGDDFVCPACG
APKDKFVDVNAEE*

mRNA from alignment at NODE_133_length_45383_cov_4.895280:16377..17618-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3460.t1 ID=Gcaud3460.t1|Name=Gcaud3460.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at NODE_133_length_45383_cov_4.895280:16377..17618- (Gracilaria caudata M_176_S67 male)
ATGAATCGCAACGGGCTTCCCGCTGCGTTCTCGCCCGCGGCGCCGGTGCT
TTCGCGCAGACATACCGCCACTCTCCACACTTCCTTGTCTACGCGTCGCC
GTCGCTCGCTCATTTTTTCCGCAAATCGCGCCACTCGCCCGGTTTCTTGT
TCAGCTGAGCAGCACAATGAGTCTCAGCTCCCGACCTATCACAATGCCCA
ACATTCCAAACTGCCCCCTTCCACTATCCGCGTCGCCAGCGCGCGAGCTA
TCAGCCCTATGCGGCGTCCTGATGCAGATCGCTTCACTGAGATGCAACCT
CTTCCCTCTCAAAGACGCACTGACTTGATGGCACCGAAAACTGTAGGATT
TTGGTCCTTTGTGCCTTATATGGCTGCGTCAGCAGTCATGGTTGGTGTGG
CTTGGCTCGCAAAAAAACGCTTTGCAGCCCGCCAGGCCAGTCTTGTGGAC
GAATTTGGCCAGGTTATAGTTCTGTACGGGAACACTCCCGATGCAAAGCG
GGAGATTGCCTCGGAGTACAAACGGAAACTTGGACCGGGCATCTTACGTG
GCGCTATGTTTGCGTCTTATCTTGCCACGCTTGTTGCTGAAAAGACTATT
GTACCATCAACCATTCAAGAGGTGGCAATGGTTAAGAAACTCTTGCGTGT
TGGAGACGACAAGGCTGTCAACGCCATTAACAAATTGGCAGCAACTATGA
GTGACTCTCCGAGCTTGTTGGGCAAACTTCTGTTCATTACTGAAAGGATT
CTGAGTGCTGAAAAGGTTTCTGGGTTGCAACTTGTCTCATTGTTTCCCTA
CAGCGCATCCACCGTTGCCGATCTGCAAAGAAACATGCTCGAAAGGTGCT
ATCGCGACTTTGTCACACATGAAATCGAGCATAATGAAGTAGAAGAGGTG
CCGTTGGCTGCTGCTGCTGCGTTGCGGTTAGATGAAGCGGACGCGAAGCT
TCTTTTCGATGGAGTTGTAAAGGAAAGAGTCAGACGGCTTGAGGAGGAGG
CAGCTAAGGCGGAGGCGGCGGAAGCAGAGGAAGCTTCCAAACCCAGCACC
GAAGATCTTGATTACCCCGCGCGCTCTGGAGAACCGGCGAAGGCGACTGT
GCATGCATATCAATGCTCGGATTGCGGTTATACTCTGTTCCCTGCTGCTG
GGAGAGAGTTTAAATTTTACGGCGACGACTTTGTATGTCCGGCCTGTGGG
GCTCCAAAGGACAAATTTGTTGATGTAAATGCAGAAGAGTAG

Coding sequence (CDS) from alignment at NODE_133_length_45383_cov_4.895280:16377..17618-

>Gcaud3460.t1 ID=Gcaud3460.t1|Name=Gcaud3460.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1242bp|location=Sequence derived from alignment at NODE_133_length_45383_cov_4.895280:16377..17618- (Gracilaria caudata M_176_S67 male)
ATGAATCGCAACGGGCTTCCCGCTGCGTTCTCGCCCGCGGCGCCGGTGCT
TTCGCGCAGACATACCGCCACTCTCCACACTTCCTTGTCTACGCGTCGCC
GTCGCTCGCTCATTTTTTCCGCAAATCGCGCCACTCGCCCGGTTTCTTGT
TCAGCTGAGCAGCACAATGAGTCTCAGCTCCCGACCTATCACAATGCCCA
ACATTCCAAACTGCCCCCTTCCACTATCCGCGTCGCCAGCGCGCGAGCTA
TCAGCCCTATGCGGCGTCCTGATGCAGATCGCTTCACTGAGATGCAACCT
CTTCCCTCTCAAAGACGCACTGACTTGATGGCACCGAAAACTGTAGGATT
TTGGTCCTTTGTGCCTTATATGGCTGCGTCAGCAGTCATGGTTGGTGTGG
CTTGGCTCGCAAAAAAACGCTTTGCAGCCCGCCAGGCCAGTCTTGTGGAC
GAATTTGGCCAGGTTATAGTTCTGTACGGGAACACTCCCGATGCAAAGCG
GGAGATTGCCTCGGAGTACAAACGGAAACTTGGACCGGGCATCTTACGTG
GCGCTATGTTTGCGTCTTATCTTGCCACGCTTGTTGCTGAAAAGACTATT
GTACCATCAACCATTCAAGAGGTGGCAATGGTTAAGAAACTCTTGCGTGT
TGGAGACGACAAGGCTGTCAACGCCATTAACAAATTGGCAGCAACTATGA
GTGACTCTCCGAGCTTGTTGGGCAAACTTCTGTTCATTACTGAAAGGATT
CTGAGTGCTGAAAAGGTTTCTGGGTTGCAACTTGTCTCATTGTTTCCCTA
CAGCGCATCCACCGTTGCCGATCTGCAAAGAAACATGCTCGAAAGGTGCT
ATCGCGACTTTGTCACACATGAAATCGAGCATAATGAAGTAGAAGAGGTG
CCGTTGGCTGCTGCTGCTGCGTTGCGGTTAGATGAAGCGGACGCGAAGCT
TCTTTTCGATGGAGTTGTAAAGGAAAGAGTCAGACGGCTTGAGGAGGAGG
CAGCTAAGGCGGAGGCGGCGGAAGCAGAGGAAGCTTCCAAACCCAGCACC
GAAGATCTTGATTACCCCGCGCGCTCTGGAGAACCGGCGAAGGCGACTGT
GCATGCATATCAATGCTCGGATTGCGGTTATACTCTGTTCCCTGCTGCTG
GGAGAGAGTTTAAATTTTACGGCGACGACTTTGTATGTCCGGCCTGTGGG
GCTCCAAAGGACAAATTTGTTGATGTAAATGCAGAAGAGTAG