Gcaud3452.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3452.t1
Unique Name	Gcaud3452.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	708

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1240_length_12232_cov_4.327732	contig	NODE_1240_length_12232_cov_4.327732:2539..4662 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4096.XP_009785451.1
PFAMs	Band_7,Band_7_C
Max annot lvl	35493\|Streptophyta
Evalue	2.99e-47
EggNOG OGs	COG0330@1\|root,KOG2620@2759\|Eukaryota,37HFS@33090\|Viridiplantae,3GF0M@35493\|Streptophyta,44EEY@71274\|asterids
Description	SPFH domain / Band 7 family
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3452	Gcaud3452	Gracilaria caudata M_176_S67 male	gene	NODE_1240_length_12232_cov_4.327732 2539..4662 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3452.t1.stop1	Gcaud3452.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1240_length_12232_cov_4.327732 2539..2541 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3452.t1.CDS1	Gcaud3452.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1240_length_12232_cov_4.327732 2539..4662 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3452.t1.exon1	Gcaud3452.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1240_length_12232_cov_4.327732 2539..4662 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3452.t1.start1	Gcaud3452.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1240_length_12232_cov_4.327732 4660..4662 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3452.t1	Gcaud3452.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1240_length_12232_cov_4.327732 2539..4662 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1240_length_12232_cov_4.327732:2539..4662-
coding sequence from alignment at NODE_1240_length_12232_cov_4.327732:2539..4662-

mRNA sequence

>Gcaud3452.t1 ID=Gcaud3452.t1|Name=Gcaud3452.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=708bp
MGKKRPLFEFNGLSGLLGDSSSSSSYNTPSSRYHSRRRRRHHRHKSRRRY
SRRKHFASDQRRRRRRAQRRLQDDGNYLAEQARREEEQRNSRRDSALGVA
VDVSSVNQSSRNAKYFQRVRQQTASGGYAGDDYLHDPVPHPLNGSHIEYA
QPPVDQDDQQGDSQGFRARRPYSDRSRPPEQRNEGMEASGEEPGEQQEGG
GEEEGDDLLAGGRGLLKKFANNKILEAVTTNKPKRKRKLLATAGALAGAA
ALAFATKKFWDKRKEQKKEEEEEEDDEAVEMYGATGPFDSEGIYLGPNPL
NLVPPPTKISVKVPQNEAFIVERGGRFHRKLNAGSNTLIPCMDHIAFRYS
LKEASMPIAWQQCFTRDNVPIRVNALLFIRVDDPVSASYEIDNAYHAIVM
LVQSSIKREFNKLTVEQAYTERYHLDQVIKDIINTASRAWGVRCTRFEIK
QVELPEDLRISLENAAAADRQRREEVRAAETQREIMVNRAEAEMQLQMRR
SQARQVDMVNQAIGEAHAISERSEAIANAMRDLAEAVSGPDGEKAMQMRI
AEQYLQAYGQIASGGPNPPSGPDPRQVASTMNDAIGLLNTLGQPNSSAHN
PYIIPSTNPFENAPAVQPQTSGAVMDGAMVPSNADVATTPVHQRMQRFVR
GSSQGVTTPDMSQTTSQHGAGGSTPAAAGVTAYPQPRMGKGGTPKLKLKG
TPQLKPR*

spliced messenger RNA

>Gcaud3452.t1 ID=Gcaud3452.t1|Name=Gcaud3452.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2124bp|location=Sequence derived from alignment at NODE_1240_length_12232_cov_4.327732:2539..4662- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAAGAAGCGGCCTTTGTTCGAGTTCAACGGACTCTCCGGTCTCCT
TGGAGACTCCTCGTCCTCCTCTTCGTACAACACCCCTTCTTCTCGTTACC
ATTCACGGCGTAGACGTCGTCATCACCGACACAAGTCACGCCGCCGCTAC
AGCAGAAGGAAACATTTCGCGTCGGATCAACGTCGCCGTCGCCGTCGGGC
GCAGCGTCGACTCCAGGATGATGGCAACTATCTAGCCGAACAAGCGCGTC
GAGAAGAGGAACAACGAAACAGTCGTAGAGATTCTGCGCTGGGTGTCGCT
GTGGATGTCAGCTCAGTAAACCAGTCTTCACGGAATGCCAAATATTTTCA
GCGTGTAAGACAGCAAACGGCGTCTGGGGGCTATGCGGGTGATGACTATC
TCCACGATCCGGTCCCACATCCCCTCAACGGTTCCCACATCGAATATGCT
CAGCCACCGGTGGACCAAGACGACCAGCAGGGTGACTCTCAGGGCTTTCG
CGCTCGCCGACCGTATTCAGACCGTTCGAGACCTCCCGAACAACGGAATG
AGGGTATGGAGGCTAGTGGAGAAGAGCCTGGAGAGCAGCAAGAAGGCGGA
GGAGAGGAGGAAGGCGATGATTTGTTGGCTGGAGGTCGTGGTCTGCTTAA
AAAGTTCGCCAACAACAAAATTCTTGAAGCTGTCACCACAAACAAACCGA
AGAGAAAGAGAAAACTCTTGGCGACGGCTGGCGCACTTGCCGGAGCTGCA
GCGCTGGCGTTCGCCACTAAGAAATTCTGGGATAAACGAAAGGAACAGAA
GAAGGAGGAGGAGGAAGAAGAAGACGACGAAGCCGTTGAAATGTACGGTG
CAACCGGACCTTTTGATTCTGAAGGAATCTATTTAGGACCAAATCCGCTG
AATCTTGTTCCGCCACCCACCAAGATCAGCGTCAAAGTTCCTCAGAACGA
AGCCTTTATCGTTGAGAGGGGCGGAAGGTTTCACCGAAAGCTCAATGCTG
GAAGTAACACGCTCATTCCTTGTATGGATCATATTGCGTTCCGATACTCG
CTCAAAGAGGCCAGTATGCCTATTGCTTGGCAGCAGTGTTTCACCCGTGA
TAACGTCCCAATTCGTGTGAATGCTCTCTTGTTTATTCGGGTGGATGATC
CCGTATCTGCATCATACGAGATTGATAACGCCTATCATGCGATCGTGATG
CTTGTACAAAGCTCTATAAAAAGGGAGTTTAACAAGTTAACAGTTGAACA
AGCATACACAGAACGTTATCACCTCGACCAAGTCATCAAGGATATTATCA
ACACAGCTTCGAGGGCGTGGGGGGTTCGTTGTACTCGCTTCGAAATCAAG
CAAGTGGAGCTACCAGAAGATCTCAGAATCTCTCTTGAGAACGCCGCGGC
GGCCGACCGACAACGTCGCGAAGAGGTTCGAGCCGCAGAAACACAACGTG
AAATCATGGTCAATCGTGCAGAAGCGGAGATGCAATTGCAAATGAGACGT
TCACAAGCACGACAGGTGGACATGGTGAATCAAGCAATTGGCGAAGCTCA
CGCTATCTCTGAACGTAGTGAGGCGATTGCAAACGCCATGCGAGACCTTG
CAGAGGCTGTAAGTGGACCGGACGGTGAAAAGGCAATGCAGATGCGCATT
GCAGAACAATACTTGCAGGCGTATGGGCAAATTGCCAGTGGTGGTCCAAA
CCCACCATCGGGACCGGATCCGCGTCAGGTAGCATCCACTATGAATGATG
CAATCGGACTTTTGAACACGCTAGGACAGCCCAACTCTTCTGCACACAAC
CCATACATCATTCCTTCAACGAATCCGTTTGAGAATGCGCCGGCTGTTCA
GCCGCAGACGAGCGGTGCTGTGATGGATGGGGCAATGGTACCGAGTAATG
CTGATGTGGCGACAACGCCTGTTCATCAACGGATGCAGCGGTTTGTGCGG
GGCTCGTCGCAGGGAGTTACGACGCCGGATATGTCACAGACTACGTCGCA
ACATGGCGCGGGCGGTTCGACGCCGGCTGCGGCTGGTGTTACGGCTTATC
CACAGCCTCGAATGGGAAAGGGAGGAACGCCGAAATTGAAACTGAAAGGC
ACGCCACAGTTGAAGCCGCGATGA

protein sequence of Gcaud3452.t1

>Gcaud3452.t1 ID=Gcaud3452.t1|Name=Gcaud3452.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=708bp
MGKKRPLFEFNGLSGLLGDSSSSSSYNTPSSRYHSRRRRRHHRHKSRRRY
SRRKHFASDQRRRRRRAQRRLQDDGNYLAEQARREEEQRNSRRDSALGVA
VDVSSVNQSSRNAKYFQRVRQQTASGGYAGDDYLHDPVPHPLNGSHIEYA
QPPVDQDDQQGDSQGFRARRPYSDRSRPPEQRNEGMEASGEEPGEQQEGG
GEEEGDDLLAGGRGLLKKFANNKILEAVTTNKPKRKRKLLATAGALAGAA
ALAFATKKFWDKRKEQKKEEEEEEDDEAVEMYGATGPFDSEGIYLGPNPL
NLVPPPTKISVKVPQNEAFIVERGGRFHRKLNAGSNTLIPCMDHIAFRYS
LKEASMPIAWQQCFTRDNVPIRVNALLFIRVDDPVSASYEIDNAYHAIVM
LVQSSIKREFNKLTVEQAYTERYHLDQVIKDIINTASRAWGVRCTRFEIK
QVELPEDLRISLENAAAADRQRREEVRAAETQREIMVNRAEAEMQLQMRR
SQARQVDMVNQAIGEAHAISERSEAIANAMRDLAEAVSGPDGEKAMQMRI
AEQYLQAYGQIASGGPNPPSGPDPRQVASTMNDAIGLLNTLGQPNSSAHN
PYIIPSTNPFENAPAVQPQTSGAVMDGAMVPSNADVATTPVHQRMQRFVR
GSSQGVTTPDMSQTTSQHGAGGSTPAAAGVTAYPQPRMGKGGTPKLKLKG
TPQLKPR*

mRNA from alignment at NODE_1240_length_12232_cov_4.327732:2539..4662-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3452.t1 ID=Gcaud3452.t1|Name=Gcaud3452.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2124bp|location=Sequence derived from alignment at NODE_1240_length_12232_cov_4.327732:2539..4662- (Gracilaria caudata M_176_S67 male)
ATGGGAAAGAAGCGGCCTTTGTTCGAGTTCAACGGACTCTCCGGTCTCCT
TGGAGACTCCTCGTCCTCCTCTTCGTACAACACCCCTTCTTCTCGTTACC
ATTCACGGCGTAGACGTCGTCATCACCGACACAAGTCACGCCGCCGCTAC
AGCAGAAGGAAACATTTCGCGTCGGATCAACGTCGCCGTCGCCGTCGGGC
GCAGCGTCGACTCCAGGATGATGGCAACTATCTAGCCGAACAAGCGCGTC
GAGAAGAGGAACAACGAAACAGTCGTAGAGATTCTGCGCTGGGTGTCGCT
GTGGATGTCAGCTCAGTAAACCAGTCTTCACGGAATGCCAAATATTTTCA
GCGTGTAAGACAGCAAACGGCGTCTGGGGGCTATGCGGGTGATGACTATC
TCCACGATCCGGTCCCACATCCCCTCAACGGTTCCCACATCGAATATGCT
CAGCCACCGGTGGACCAAGACGACCAGCAGGGTGACTCTCAGGGCTTTCG
CGCTCGCCGACCGTATTCAGACCGTTCGAGACCTCCCGAACAACGGAATG
AGGGTATGGAGGCTAGTGGAGAAGAGCCTGGAGAGCAGCAAGAAGGCGGA
GGAGAGGAGGAAGGCGATGATTTGTTGGCTGGAGGTCGTGGTCTGCTTAA
AAAGTTCGCCAACAACAAAATTCTTGAAGCTGTCACCACAAACAAACCGA
AGAGAAAGAGAAAACTCTTGGCGACGGCTGGCGCACTTGCCGGAGCTGCA
GCGCTGGCGTTCGCCACTAAGAAATTCTGGGATAAACGAAAGGAACAGAA
GAAGGAGGAGGAGGAAGAAGAAGACGACGAAGCCGTTGAAATGTACGGTG
CAACCGGACCTTTTGATTCTGAAGGAATCTATTTAGGACCAAATCCGCTG
AATCTTGTTCCGCCACCCACCAAGATCAGCGTCAAAGTTCCTCAGAACGA
AGCCTTTATCGTTGAGAGGGGCGGAAGGTTTCACCGAAAGCTCAATGCTG
GAAGTAACACGCTCATTCCTTGTATGGATCATATTGCGTTCCGATACTCG
CTCAAAGAGGCCAGTATGCCTATTGCTTGGCAGCAGTGTTTCACCCGTGA
TAACGTCCCAATTCGTGTGAATGCTCTCTTGTTTATTCGGGTGGATGATC
CCGTATCTGCATCATACGAGATTGATAACGCCTATCATGCGATCGTGATG
CTTGTACAAAGCTCTATAAAAAGGGAGTTTAACAAGTTAACAGTTGAACA
AGCATACACAGAACGTTATCACCTCGACCAAGTCATCAAGGATATTATCA
ACACAGCTTCGAGGGCGTGGGGGGTTCGTTGTACTCGCTTCGAAATCAAG
CAAGTGGAGCTACCAGAAGATCTCAGAATCTCTCTTGAGAACGCCGCGGC
GGCCGACCGACAACGTCGCGAAGAGGTTCGAGCCGCAGAAACACAACGTG
AAATCATGGTCAATCGTGCAGAAGCGGAGATGCAATTGCAAATGAGACGT
TCACAAGCACGACAGGTGGACATGGTGAATCAAGCAATTGGCGAAGCTCA
CGCTATCTCTGAACGTAGTGAGGCGATTGCAAACGCCATGCGAGACCTTG
CAGAGGCTGTAAGTGGACCGGACGGTGAAAAGGCAATGCAGATGCGCATT
GCAGAACAATACTTGCAGGCGTATGGGCAAATTGCCAGTGGTGGTCCAAA
CCCACCATCGGGACCGGATCCGCGTCAGGTAGCATCCACTATGAATGATG
CAATCGGACTTTTGAACACGCTAGGACAGCCCAACTCTTCTGCACACAAC
CCATACATCATTCCTTCAACGAATCCGTTTGAGAATGCGCCGGCTGTTCA
GCCGCAGACGAGCGGTGCTGTGATGGATGGGGCAATGGTACCGAGTAATG
CTGATGTGGCGACAACGCCTGTTCATCAACGGATGCAGCGGTTTGTGCGG
GGCTCGTCGCAGGGAGTTACGACGCCGGATATGTCACAGACTACGTCGCA
ACATGGCGCGGGCGGTTCGACGCCGGCTGCGGCTGGTGTTACGGCTTATC
CACAGCCTCGAATGGGAAAGGGAGGAACGCCGAAATTGAAACTGAAAGGC
ACGCCACAGTTGAAGCCGCGATGA

Coding sequence (CDS) from alignment at NODE_1240_length_12232_cov_4.327732:2539..4662-

>Gcaud3452.t1 ID=Gcaud3452.t1|Name=Gcaud3452.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2124bp|location=Sequence derived from alignment at NODE_1240_length_12232_cov_4.327732:2539..4662- (Gracilaria caudata M_176_S67 male)
ATGGGAAAGAAGCGGCCTTTGTTCGAGTTCAACGGACTCTCCGGTCTCCT
TGGAGACTCCTCGTCCTCCTCTTCGTACAACACCCCTTCTTCTCGTTACC
ATTCACGGCGTAGACGTCGTCATCACCGACACAAGTCACGCCGCCGCTAC
AGCAGAAGGAAACATTTCGCGTCGGATCAACGTCGCCGTCGCCGTCGGGC
GCAGCGTCGACTCCAGGATGATGGCAACTATCTAGCCGAACAAGCGCGTC
GAGAAGAGGAACAACGAAACAGTCGTAGAGATTCTGCGCTGGGTGTCGCT
GTGGATGTCAGCTCAGTAAACCAGTCTTCACGGAATGCCAAATATTTTCA
GCGTGTAAGACAGCAAACGGCGTCTGGGGGCTATGCGGGTGATGACTATC
TCCACGATCCGGTCCCACATCCCCTCAACGGTTCCCACATCGAATATGCT
CAGCCACCGGTGGACCAAGACGACCAGCAGGGTGACTCTCAGGGCTTTCG
CGCTCGCCGACCGTATTCAGACCGTTCGAGACCTCCCGAACAACGGAATG
AGGGTATGGAGGCTAGTGGAGAAGAGCCTGGAGAGCAGCAAGAAGGCGGA
GGAGAGGAGGAAGGCGATGATTTGTTGGCTGGAGGTCGTGGTCTGCTTAA
AAAGTTCGCCAACAACAAAATTCTTGAAGCTGTCACCACAAACAAACCGA
AGAGAAAGAGAAAACTCTTGGCGACGGCTGGCGCACTTGCCGGAGCTGCA
GCGCTGGCGTTCGCCACTAAGAAATTCTGGGATAAACGAAAGGAACAGAA
GAAGGAGGAGGAGGAAGAAGAAGACGACGAAGCCGTTGAAATGTACGGTG
CAACCGGACCTTTTGATTCTGAAGGAATCTATTTAGGACCAAATCCGCTG
AATCTTGTTCCGCCACCCACCAAGATCAGCGTCAAAGTTCCTCAGAACGA
AGCCTTTATCGTTGAGAGGGGCGGAAGGTTTCACCGAAAGCTCAATGCTG
GAAGTAACACGCTCATTCCTTGTATGGATCATATTGCGTTCCGATACTCG
CTCAAAGAGGCCAGTATGCCTATTGCTTGGCAGCAGTGTTTCACCCGTGA
TAACGTCCCAATTCGTGTGAATGCTCTCTTGTTTATTCGGGTGGATGATC
CCGTATCTGCATCATACGAGATTGATAACGCCTATCATGCGATCGTGATG
CTTGTACAAAGCTCTATAAAAAGGGAGTTTAACAAGTTAACAGTTGAACA
AGCATACACAGAACGTTATCACCTCGACCAAGTCATCAAGGATATTATCA
ACACAGCTTCGAGGGCGTGGGGGGTTCGTTGTACTCGCTTCGAAATCAAG
CAAGTGGAGCTACCAGAAGATCTCAGAATCTCTCTTGAGAACGCCGCGGC
GGCCGACCGACAACGTCGCGAAGAGGTTCGAGCCGCAGAAACACAACGTG
AAATCATGGTCAATCGTGCAGAAGCGGAGATGCAATTGCAAATGAGACGT
TCACAAGCACGACAGGTGGACATGGTGAATCAAGCAATTGGCGAAGCTCA
CGCTATCTCTGAACGTAGTGAGGCGATTGCAAACGCCATGCGAGACCTTG
CAGAGGCTGTAAGTGGACCGGACGGTGAAAAGGCAATGCAGATGCGCATT
GCAGAACAATACTTGCAGGCGTATGGGCAAATTGCCAGTGGTGGTCCAAA
CCCACCATCGGGACCGGATCCGCGTCAGGTAGCATCCACTATGAATGATG
CAATCGGACTTTTGAACACGCTAGGACAGCCCAACTCTTCTGCACACAAC
CCATACATCATTCCTTCAACGAATCCGTTTGAGAATGCGCCGGCTGTTCA
GCCGCAGACGAGCGGTGCTGTGATGGATGGGGCAATGGTACCGAGTAATG
CTGATGTGGCGACAACGCCTGTTCATCAACGGATGCAGCGGTTTGTGCGG
GGCTCGTCGCAGGGAGTTACGACGCCGGATATGTCACAGACTACGTCGCA
ACATGGCGCGGGCGGTTCGACGCCGGCTGCGGCTGGTGTTACGGCTTATC
CACAGCCTCGAATGGGAAAGGGAGGAACGCCGAAATTGAAACTGAAAGGC
ACGCCACAGTTGAAGCCGCGATGA