Gcaud3446.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3446.t1
Unique NameGcaud3446.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length180
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_17_length_79749_cov_4.367006contigNODE_17_length_79749_cov_4.367006:78867..79406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3446Gcaud3446Gracilaria caudata M_176_S67 malegeneNODE_17_length_79749_cov_4.367006 78867..79406 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3446.t1.stop1Gcaud3446.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_17_length_79749_cov_4.367006 78867..78869 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3446.t1.CDS1Gcaud3446.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_17_length_79749_cov_4.367006 78867..79406 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3446.t1.exon1Gcaud3446.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_17_length_79749_cov_4.367006 78867..79406 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3446.t1.start1Gcaud3446.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_17_length_79749_cov_4.367006 79404..79406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3446.t1Gcaud3446.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_17_length_79749_cov_4.367006 78867..79406 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3446.t1 ID=Gcaud3446.t1|Name=Gcaud3446.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=180bp
MKFLLASTLVTLIGWACAGCIRQPVFEIWEALESANLVCDGDAGGSGFHV
DENSLTHEVFTGGVPDRVEGLSPDMIPGTLRLEIVRTVLGSINKGASFIV
ADGQTYRFGGGVGQRRNFKEKFNVLQALVYAQEVGNCPVDSKGQVFPQLS
SVRVSLQTLAAAFGIDYCLDAEFRRIPLR*
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spliced messenger RNA

>Gcaud3446.t1 ID=Gcaud3446.t1|Name=Gcaud3446.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=540bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:78867..79406- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTCTTACTTGCAAGTACGCTGGTGACCTTGATTGGTTGGGCGTG
TGCCGGATGTATAAGGCAACCAGTGTTCGAGATCTGGGAGGCACTTGAGT
CTGCTAATCTTGTGTGCGACGGAGACGCAGGTGGAAGTGGGTTTCACGTT
GACGAAAACAGCCTGACGCATGAGGTGTTTACGGGCGGAGTGCCTGACAG
AGTGGAAGGACTTTCTCCTGACATGATCCCAGGAACGTTACGTCTGGAAA
TAGTGCGAACAGTGCTGGGATCGATCAACAAGGGCGCCAGCTTTATTGTG
GCCGATGGACAGACGTACAGGTTTGGCGGCGGCGTGGGGCAACGACGGAA
TTTCAAGGAGAAGTTCAACGTGCTGCAGGCGCTGGTGTACGCGCAGGAAG
TCGGCAACTGCCCGGTGGATTCGAAGGGACAGGTATTCCCACAGCTGTCC
TCGGTTCGAGTGTCGCTGCAGACGTTGGCGGCTGCGTTTGGAATAGACTA
CTGCCTCGATGCGGAGTTCCGCCGCATCCCGCTGAGGTGA
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protein sequence of Gcaud3446.t1

>Gcaud3446.t1 ID=Gcaud3446.t1|Name=Gcaud3446.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=180bp
MKFLLASTLVTLIGWACAGCIRQPVFEIWEALESANLVCDGDAGGSGFHV
DENSLTHEVFTGGVPDRVEGLSPDMIPGTLRLEIVRTVLGSINKGASFIV
ADGQTYRFGGGVGQRRNFKEKFNVLQALVYAQEVGNCPVDSKGQVFPQLS
SVRVSLQTLAAAFGIDYCLDAEFRRIPLR*
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mRNA from alignment at NODE_17_length_79749_cov_4.367006:78867..79406-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3446.t1 ID=Gcaud3446.t1|Name=Gcaud3446.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=540bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:78867..79406- (Gracilaria caudata M_176_S67 male)
ATGAAGTTCTTACTTGCAAGTACGCTGGTGACCTTGATTGGTTGGGCGTG
TGCCGGATGTATAAGGCAACCAGTGTTCGAGATCTGGGAGGCACTTGAGT
CTGCTAATCTTGTGTGCGACGGAGACGCAGGTGGAAGTGGGTTTCACGTT
GACGAAAACAGCCTGACGCATGAGGTGTTTACGGGCGGAGTGCCTGACAG
AGTGGAAGGACTTTCTCCTGACATGATCCCAGGAACGTTACGTCTGGAAA
TAGTGCGAACAGTGCTGGGATCGATCAACAAGGGCGCCAGCTTTATTGTG
GCCGATGGACAGACGTACAGGTTTGGCGGCGGCGTGGGGCAACGACGGAA
TTTCAAGGAGAAGTTCAACGTGCTGCAGGCGCTGGTGTACGCGCAGGAAG
TCGGCAACTGCCCGGTGGATTCGAAGGGACAGGTATTCCCACAGCTGTCC
TCGGTTCGAGTGTCGCTGCAGACGTTGGCGGCTGCGTTTGGAATAGACTA
CTGCCTCGATGCGGAGTTCCGCCGCATCCCGCTGAGGTGA
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Coding sequence (CDS) from alignment at NODE_17_length_79749_cov_4.367006:78867..79406-

>Gcaud3446.t1 ID=Gcaud3446.t1|Name=Gcaud3446.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=540bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:78867..79406- (Gracilaria caudata M_176_S67 male)
ATGAAGTTCTTACTTGCAAGTACGCTGGTGACCTTGATTGGTTGGGCGTG
TGCCGGATGTATAAGGCAACCAGTGTTCGAGATCTGGGAGGCACTTGAGT
CTGCTAATCTTGTGTGCGACGGAGACGCAGGTGGAAGTGGGTTTCACGTT
GACGAAAACAGCCTGACGCATGAGGTGTTTACGGGCGGAGTGCCTGACAG
AGTGGAAGGACTTTCTCCTGACATGATCCCAGGAACGTTACGTCTGGAAA
TAGTGCGAACAGTGCTGGGATCGATCAACAAGGGCGCCAGCTTTATTGTG
GCCGATGGACAGACGTACAGGTTTGGCGGCGGCGTGGGGCAACGACGGAA
TTTCAAGGAGAAGTTCAACGTGCTGCAGGCGCTGGTGTACGCGCAGGAAG
TCGGCAACTGCCCGGTGGATTCGAAGGGACAGGTATTCCCACAGCTGTCC
TCGGTTCGAGTGTCGCTGCAGACGTTGGCGGCTGCGTTTGGAATAGACTA
CTGCCTCGATGCGGAGTTCCGCCGCATCCCGCTGAGGTGA
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