Gcaud3443.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3443.t1
Unique Name	Gcaud3443.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	669

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_17_length_79749_cov_4.367006	contig	NODE_17_length_79749_cov_4.367006:73043..75049 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3443	Gcaud3443	Gracilaria caudata M_176_S67 male	gene	NODE_17_length_79749_cov_4.367006 73043..75049 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3443.t1.start1	Gcaud3443.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_17_length_79749_cov_4.367006 73043..73045 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3443.t1.CDS1	Gcaud3443.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_17_length_79749_cov_4.367006 73043..75049 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3443.t1.exon1	Gcaud3443.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_17_length_79749_cov_4.367006 73043..75049 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3443.t1.stop1	Gcaud3443.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_17_length_79749_cov_4.367006 75047..75049 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3443.t1	Gcaud3443.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_17_length_79749_cov_4.367006 73043..75049 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_17_length_79749_cov_4.367006:73043..75049+
coding sequence from alignment at NODE_17_length_79749_cov_4.367006:73043..75049+

mRNA sequence

>Gcaud3443.t1 ID=Gcaud3443.t1|Name=Gcaud3443.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=669bp
MEIVFIAAAIACSLGLGGASFQIFRRPTQNDTKPQKRAEKYSQSQDGLPL
LQDKDSPLVQSSDVHAILRKLRKWISPADRASAQDHQSWYSGGIAEFQRL
IEDQKHYFSALASSKARVVLGVCQSAEDDHKSTPLVTRKKQPVRYPVELR
DSSLFSIACTHLSLNRPFVVQGFNGRKIYGLDLVQGEAWRYYDLSTIINS
PLGLSSSCKCGISRPAEPTVDPEKQITATIVFRLAWSISMFLPCPCGKDD
RVTEEERCDMYYRAVYCVCQRLEDIYASMSGNEEQDSSSAVCAGIRIRHN
RSDRRLNVSGKNTSSFARAMYMVSRMYNTFLLAAYSETDMEGTMTHRLKT
RTRVTSEEAIETICARLTEEHDAEASLNWLCFNKWNSDEVKSVPKHKLPV
HTELKRAVRFMDSAGIEHLVDVSIEELKPARIPFGKERLEWVSFSEGTSS
GVPMMRKPQFCTSHDIFCIGRPRLKDTPVLDFSKMSFNENGQDITIAITE
DGAVLTFKEMTRNVRKVLRRVVMLSMMDNGLGFNLWRVLGKDLYKDDYVF
VNEALSMKYGGEVFDFIVSNVMSGKIAVQENSTAASYVPKTSKKRKGVAL
NTPLRADFWKDKSFFLTEQNLYWLPREGFNYFKVERRKGDGLLTMTEVED
LDGQPLYKCSAILDTPVV*

spliced messenger RNA

>Gcaud3443.t1 ID=Gcaud3443.t1|Name=Gcaud3443.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2007bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:73043..75049+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAATTGTCTTCATCGCAGCTGCGATTGCCTGCTCCCTGGGCCTAGG
AGGAGCTTCGTTCCAGATTTTCCGGCGGCCTACACAGAACGACACTAAGC
CTCAAAAACGTGCTGAAAAGTATTCTCAGAGTCAAGATGGGCTTCCTCTT
CTTCAAGACAAAGATTCTCCTCTTGTTCAGTCAAGTGATGTGCATGCCAT
TTTGAGAAAGCTAAGGAAATGGATTTCTCCAGCCGACCGTGCTTCTGCTC
AGGACCACCAAAGTTGGTATTCAGGTGGCATCGCAGAGTTTCAAAGACTT
ATTGAGGATCAGAAACACTATTTCAGCGCGCTTGCTTCATCAAAGGCGCG
CGTTGTACTTGGAGTGTGCCAGTCTGCAGAGGATGACCATAAAAGCACTC
CGCTTGTAACTCGTAAGAAGCAGCCCGTCCGATACCCTGTGGAGCTAAGG
GATTCATCCTTATTTAGCATAGCATGTACTCATCTTTCCCTGAATCGCCC
GTTTGTCGTTCAAGGGTTCAATGGAAGAAAGATATATGGATTGGATCTGG
TTCAAGGAGAAGCTTGGCGGTACTACGACCTCAGTACAATAATCAATAGT
CCGCTAGGTCTTTCAAGTTCATGCAAGTGCGGGATAAGCCGTCCCGCCGA
ACCAACAGTAGACCCGGAAAAACAAATTACTGCTACTATTGTCTTCAGGT
TGGCATGGTCGATATCGATGTTCTTACCTTGTCCTTGTGGAAAGGATGAC
AGGGTGACGGAGGAAGAAAGATGTGATATGTATTATCGCGCTGTGTATTG
CGTTTGTCAACGACTCGAAGACATTTATGCGTCGATGTCCGGAAACGAAG
AACAAGACTCTTCATCAGCAGTTTGTGCTGGCATTCGCATCAGACACAAT
CGTTCGGATCGCAGACTGAATGTTTCCGGCAAAAATACTTCCAGCTTTGC
CAGGGCCATGTACATGGTTTCAAGAATGTATAATACGTTTTTGTTGGCAG
CTTACTCTGAAACTGACATGGAGGGAACAATGACCCACAGACTGAAAACG
CGAACGCGGGTTACGAGCGAAGAGGCCATTGAAACTATATGCGCAAGACT
CACAGAAGAGCACGATGCGGAGGCAAGTCTAAACTGGCTCTGTTTCAACA
AATGGAACTCTGATGAAGTAAAAAGCGTGCCGAAGCATAAACTACCAGTT
CACACCGAGCTCAAACGAGCTGTTCGATTTATGGATAGTGCAGGTATCGA
ACATCTCGTAGATGTGAGTATCGAAGAGCTTAAACCCGCGCGCATCCCAT
TTGGAAAGGAGAGATTGGAATGGGTATCTTTTTCTGAAGGGACTTCATCC
GGGGTGCCGATGATGAGAAAGCCTCAGTTTTGCACTAGCCACGACATATT
TTGCATAGGAAGACCACGACTGAAGGACACTCCAGTATTGGATTTCAGCA
AAATGTCCTTCAACGAGAACGGGCAGGATATCACAATTGCAATAACGGAA
GATGGGGCTGTTCTGACCTTCAAGGAAATGACGAGAAACGTAAGGAAGGT
GCTCAGAAGAGTTGTCATGCTATCGATGATGGACAATGGCTTAGGGTTTA
ATTTATGGAGAGTTTTGGGCAAGGATCTGTACAAAGATGACTATGTGTTC
GTCAATGAAGCCCTCTCAATGAAGTACGGCGGAGAGGTGTTCGATTTCAT
CGTTTCAAATGTAATGTCTGGAAAAATCGCAGTACAAGAGAACTCCACAG
CAGCTTCCTATGTGCCGAAAACGAGTAAGAAGCGAAAAGGAGTTGCTTTG
AACACTCCTTTGAGAGCGGATTTCTGGAAAGACAAGTCTTTTTTCCTTAC
CGAGCAGAACCTATACTGGCTTCCTCGAGAAGGTTTCAACTACTTCAAGG
TAGAAAGACGTAAGGGAGACGGTTTGTTGACGATGACGGAGGTTGAAGAT
CTTGACGGGCAACCCCTATACAAGTGTTCAGCCATTCTCGACACACCTGT
TGTGTGA

protein sequence of Gcaud3443.t1

>Gcaud3443.t1 ID=Gcaud3443.t1|Name=Gcaud3443.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=669bp
MEIVFIAAAIACSLGLGGASFQIFRRPTQNDTKPQKRAEKYSQSQDGLPL
LQDKDSPLVQSSDVHAILRKLRKWISPADRASAQDHQSWYSGGIAEFQRL
IEDQKHYFSALASSKARVVLGVCQSAEDDHKSTPLVTRKKQPVRYPVELR
DSSLFSIACTHLSLNRPFVVQGFNGRKIYGLDLVQGEAWRYYDLSTIINS
PLGLSSSCKCGISRPAEPTVDPEKQITATIVFRLAWSISMFLPCPCGKDD
RVTEEERCDMYYRAVYCVCQRLEDIYASMSGNEEQDSSSAVCAGIRIRHN
RSDRRLNVSGKNTSSFARAMYMVSRMYNTFLLAAYSETDMEGTMTHRLKT
RTRVTSEEAIETICARLTEEHDAEASLNWLCFNKWNSDEVKSVPKHKLPV
HTELKRAVRFMDSAGIEHLVDVSIEELKPARIPFGKERLEWVSFSEGTSS
GVPMMRKPQFCTSHDIFCIGRPRLKDTPVLDFSKMSFNENGQDITIAITE
DGAVLTFKEMTRNVRKVLRRVVMLSMMDNGLGFNLWRVLGKDLYKDDYVF
VNEALSMKYGGEVFDFIVSNVMSGKIAVQENSTAASYVPKTSKKRKGVAL
NTPLRADFWKDKSFFLTEQNLYWLPREGFNYFKVERRKGDGLLTMTEVED
LDGQPLYKCSAILDTPVV*

mRNA from alignment at NODE_17_length_79749_cov_4.367006:73043..75049+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3443.t1 ID=Gcaud3443.t1|Name=Gcaud3443.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2007bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:73043..75049+ (Gracilaria caudata M_176_S67 male)
ATGGAAATTGTCTTCATCGCAGCTGCGATTGCCTGCTCCCTGGGCCTAGG
AGGAGCTTCGTTCCAGATTTTCCGGCGGCCTACACAGAACGACACTAAGC
CTCAAAAACGTGCTGAAAAGTATTCTCAGAGTCAAGATGGGCTTCCTCTT
CTTCAAGACAAAGATTCTCCTCTTGTTCAGTCAAGTGATGTGCATGCCAT
TTTGAGAAAGCTAAGGAAATGGATTTCTCCAGCCGACCGTGCTTCTGCTC
AGGACCACCAAAGTTGGTATTCAGGTGGCATCGCAGAGTTTCAAAGACTT
ATTGAGGATCAGAAACACTATTTCAGCGCGCTTGCTTCATCAAAGGCGCG
CGTTGTACTTGGAGTGTGCCAGTCTGCAGAGGATGACCATAAAAGCACTC
CGCTTGTAACTCGTAAGAAGCAGCCCGTCCGATACCCTGTGGAGCTAAGG
GATTCATCCTTATTTAGCATAGCATGTACTCATCTTTCCCTGAATCGCCC
GTTTGTCGTTCAAGGGTTCAATGGAAGAAAGATATATGGATTGGATCTGG
TTCAAGGAGAAGCTTGGCGGTACTACGACCTCAGTACAATAATCAATAGT
CCGCTAGGTCTTTCAAGTTCATGCAAGTGCGGGATAAGCCGTCCCGCCGA
ACCAACAGTAGACCCGGAAAAACAAATTACTGCTACTATTGTCTTCAGGT
TGGCATGGTCGATATCGATGTTCTTACCTTGTCCTTGTGGAAAGGATGAC
AGGGTGACGGAGGAAGAAAGATGTGATATGTATTATCGCGCTGTGTATTG
CGTTTGTCAACGACTCGAAGACATTTATGCGTCGATGTCCGGAAACGAAG
AACAAGACTCTTCATCAGCAGTTTGTGCTGGCATTCGCATCAGACACAAT
CGTTCGGATCGCAGACTGAATGTTTCCGGCAAAAATACTTCCAGCTTTGC
CAGGGCCATGTACATGGTTTCAAGAATGTATAATACGTTTTTGTTGGCAG
CTTACTCTGAAACTGACATGGAGGGAACAATGACCCACAGACTGAAAACG
CGAACGCGGGTTACGAGCGAAGAGGCCATTGAAACTATATGCGCAAGACT
CACAGAAGAGCACGATGCGGAGGCAAGTCTAAACTGGCTCTGTTTCAACA
AATGGAACTCTGATGAAGTAAAAAGCGTGCCGAAGCATAAACTACCAGTT
CACACCGAGCTCAAACGAGCTGTTCGATTTATGGATAGTGCAGGTATCGA
ACATCTCGTAGATGTGAGTATCGAAGAGCTTAAACCCGCGCGCATCCCAT
TTGGAAAGGAGAGATTGGAATGGGTATCTTTTTCTGAAGGGACTTCATCC
GGGGTGCCGATGATGAGAAAGCCTCAGTTTTGCACTAGCCACGACATATT
TTGCATAGGAAGACCACGACTGAAGGACACTCCAGTATTGGATTTCAGCA
AAATGTCCTTCAACGAGAACGGGCAGGATATCACAATTGCAATAACGGAA
GATGGGGCTGTTCTGACCTTCAAGGAAATGACGAGAAACGTAAGGAAGGT
GCTCAGAAGAGTTGTCATGCTATCGATGATGGACAATGGCTTAGGGTTTA
ATTTATGGAGAGTTTTGGGCAAGGATCTGTACAAAGATGACTATGTGTTC
GTCAATGAAGCCCTCTCAATGAAGTACGGCGGAGAGGTGTTCGATTTCAT
CGTTTCAAATGTAATGTCTGGAAAAATCGCAGTACAAGAGAACTCCACAG
CAGCTTCCTATGTGCCGAAAACGAGTAAGAAGCGAAAAGGAGTTGCTTTG
AACACTCCTTTGAGAGCGGATTTCTGGAAAGACAAGTCTTTTTTCCTTAC
CGAGCAGAACCTATACTGGCTTCCTCGAGAAGGTTTCAACTACTTCAAGG
TAGAAAGACGTAAGGGAGACGGTTTGTTGACGATGACGGAGGTTGAAGAT
CTTGACGGGCAACCCCTATACAAGTGTTCAGCCATTCTCGACACACCTGT
TGTGTGA

Coding sequence (CDS) from alignment at NODE_17_length_79749_cov_4.367006:73043..75049+

>Gcaud3443.t1 ID=Gcaud3443.t1|Name=Gcaud3443.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2007bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:73043..75049+ (Gracilaria caudata M_176_S67 male)
ATGGAAATTGTCTTCATCGCAGCTGCGATTGCCTGCTCCCTGGGCCTAGG
AGGAGCTTCGTTCCAGATTTTCCGGCGGCCTACACAGAACGACACTAAGC
CTCAAAAACGTGCTGAAAAGTATTCTCAGAGTCAAGATGGGCTTCCTCTT
CTTCAAGACAAAGATTCTCCTCTTGTTCAGTCAAGTGATGTGCATGCCAT
TTTGAGAAAGCTAAGGAAATGGATTTCTCCAGCCGACCGTGCTTCTGCTC
AGGACCACCAAAGTTGGTATTCAGGTGGCATCGCAGAGTTTCAAAGACTT
ATTGAGGATCAGAAACACTATTTCAGCGCGCTTGCTTCATCAAAGGCGCG
CGTTGTACTTGGAGTGTGCCAGTCTGCAGAGGATGACCATAAAAGCACTC
CGCTTGTAACTCGTAAGAAGCAGCCCGTCCGATACCCTGTGGAGCTAAGG
GATTCATCCTTATTTAGCATAGCATGTACTCATCTTTCCCTGAATCGCCC
GTTTGTCGTTCAAGGGTTCAATGGAAGAAAGATATATGGATTGGATCTGG
TTCAAGGAGAAGCTTGGCGGTACTACGACCTCAGTACAATAATCAATAGT
CCGCTAGGTCTTTCAAGTTCATGCAAGTGCGGGATAAGCCGTCCCGCCGA
ACCAACAGTAGACCCGGAAAAACAAATTACTGCTACTATTGTCTTCAGGT
TGGCATGGTCGATATCGATGTTCTTACCTTGTCCTTGTGGAAAGGATGAC
AGGGTGACGGAGGAAGAAAGATGTGATATGTATTATCGCGCTGTGTATTG
CGTTTGTCAACGACTCGAAGACATTTATGCGTCGATGTCCGGAAACGAAG
AACAAGACTCTTCATCAGCAGTTTGTGCTGGCATTCGCATCAGACACAAT
CGTTCGGATCGCAGACTGAATGTTTCCGGCAAAAATACTTCCAGCTTTGC
CAGGGCCATGTACATGGTTTCAAGAATGTATAATACGTTTTTGTTGGCAG
CTTACTCTGAAACTGACATGGAGGGAACAATGACCCACAGACTGAAAACG
CGAACGCGGGTTACGAGCGAAGAGGCCATTGAAACTATATGCGCAAGACT
CACAGAAGAGCACGATGCGGAGGCAAGTCTAAACTGGCTCTGTTTCAACA
AATGGAACTCTGATGAAGTAAAAAGCGTGCCGAAGCATAAACTACCAGTT
CACACCGAGCTCAAACGAGCTGTTCGATTTATGGATAGTGCAGGTATCGA
ACATCTCGTAGATGTGAGTATCGAAGAGCTTAAACCCGCGCGCATCCCAT
TTGGAAAGGAGAGATTGGAATGGGTATCTTTTTCTGAAGGGACTTCATCC
GGGGTGCCGATGATGAGAAAGCCTCAGTTTTGCACTAGCCACGACATATT
TTGCATAGGAAGACCACGACTGAAGGACACTCCAGTATTGGATTTCAGCA
AAATGTCCTTCAACGAGAACGGGCAGGATATCACAATTGCAATAACGGAA
GATGGGGCTGTTCTGACCTTCAAGGAAATGACGAGAAACGTAAGGAAGGT
GCTCAGAAGAGTTGTCATGCTATCGATGATGGACAATGGCTTAGGGTTTA
ATTTATGGAGAGTTTTGGGCAAGGATCTGTACAAAGATGACTATGTGTTC
GTCAATGAAGCCCTCTCAATGAAGTACGGCGGAGAGGTGTTCGATTTCAT
CGTTTCAAATGTAATGTCTGGAAAAATCGCAGTACAAGAGAACTCCACAG
CAGCTTCCTATGTGCCGAAAACGAGTAAGAAGCGAAAAGGAGTTGCTTTG
AACACTCCTTTGAGAGCGGATTTCTGGAAAGACAAGTCTTTTTTCCTTAC
CGAGCAGAACCTATACTGGCTTCCTCGAGAAGGTTTCAACTACTTCAAGG
TAGAAAGACGTAAGGGAGACGGTTTGTTGACGATGACGGAGGTTGAAGAT
CTTGACGGGCAACCCCTATACAAGTGTTCAGCCATTCTCGACACACCTGT
TGTGTGA