Gcaud3440.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3440.t1
Unique Name	Gcaud3440.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	347

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_17_length_79749_cov_4.367006	contig	NODE_17_length_79749_cov_4.367006:68026..69066 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S89_56V6.1
PFAMs	DHQS
Max annot lvl	35493\|Streptophyta
Evalue	9.55e-70
EggNOG OGs	COG1465@1\|root,2QSUR@2759\|Eukaryota,37NQ2@33090\|Viridiplantae,3G7F2@35493\|Streptophyta
Description	isoform X1
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3440	Gcaud3440	Gracilaria caudata M_176_S67 male	gene	NODE_17_length_79749_cov_4.367006 68026..69066 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3440.t1.stop1	Gcaud3440.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_17_length_79749_cov_4.367006 68026..68028 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3440.t1.CDS1	Gcaud3440.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_17_length_79749_cov_4.367006 68026..69066 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3440.t1.exon1	Gcaud3440.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_17_length_79749_cov_4.367006 68026..69066 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3440.t1.start1	Gcaud3440.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_17_length_79749_cov_4.367006 69064..69066 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3440.t1	Gcaud3440.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_17_length_79749_cov_4.367006 68026..69066 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_17_length_79749_cov_4.367006:68026..69066-
coding sequence from alignment at NODE_17_length_79749_cov_4.367006:68026..69066-

mRNA sequence

>Gcaud3440.t1 ID=Gcaud3440.t1|Name=Gcaud3440.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=347bp
MRTFWVQPKSKTALTTSLEHNLTDFIFTDKNFFNECSSIARFNSLFIPQS
GHFENGLYSCITCAQDVTNLLEQAKKCKTIIMGSTDWKIIPAENLIASCQ
QSQTELLAMVHSTQEARSMFGMLQVGVDGCVLQSDNLEEIISFANLKSEM
IDKVGGAIHKLTFATVSNIRPVNMGERVCIDTCSMLAENEGMLIGSSSQA
MFVILSEAAETAYVPSRPFRVNAGAVHSYCALAGGKTKYLAEICAGDEVM
IVSDFGNSSRTAVVGRAKIESRPLLMIEAMVEGDDSNKCTLFVQNAETVR
LAVVDEVGNGSMQSVSTLEEGTRLLLKSDKKARHVGLAIEEDVIEK*

spliced messenger RNA

>Gcaud3440.t1 ID=Gcaud3440.t1|Name=Gcaud3440.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:68026..69066- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTACCTTTTGGGTGCAACCAAAGTCAAAAACAGCACTAACAACATC
CCTAGAACACAACCTCACCGACTTCATCTTCACCGACAAAAACTTCTTCA
ACGAATGTTCATCCATCGCCCGTTTCAATTCATTGTTTATTCCACAATCC
GGTCATTTCGAAAACGGTCTCTACTCCTGCATAACGTGTGCACAAGACGT
AACCAATCTACTCGAGCAAGCAAAGAAGTGCAAAACCATTATCATGGGTT
CCACGGATTGGAAGATCATCCCTGCAGAAAACCTGATAGCCAGTTGTCAG
CAATCGCAAACCGAGCTTCTTGCTATGGTACACTCTACACAGGAAGCAAG
ATCAATGTTTGGAATGCTCCAGGTCGGTGTAGATGGATGCGTTCTTCAGT
CTGATAACCTTGAAGAGATCATATCGTTTGCTAACTTAAAAAGTGAGATG
ATAGATAAAGTAGGCGGCGCAATACACAAGTTAACGTTCGCCACCGTTTC
CAATATCCGTCCGGTCAACATGGGAGAGCGAGTATGCATCGATACATGTT
CCATGCTCGCCGAGAACGAAGGAATGTTAATAGGTTCTTCATCACAGGCC
ATGTTTGTAATTCTGTCCGAAGCAGCTGAAACAGCTTATGTACCAAGCCG
ACCATTCCGTGTCAATGCCGGAGCCGTACATTCATATTGCGCGCTCGCAG
GAGGAAAGACAAAATATCTAGCTGAGATCTGTGCGGGTGATGAAGTGATG
ATAGTAAGCGATTTCGGAAATAGTAGTCGAACAGCGGTGGTAGGAAGAGC
CAAAATTGAAAGTCGGCCTTTGTTAATGATTGAAGCCATGGTTGAAGGAG
ATGATAGTAACAAGTGTACATTGTTCGTGCAGAACGCAGAAACTGTTAGA
TTGGCTGTGGTTGACGAGGTTGGAAACGGAAGCATGCAAAGTGTGAGCAC
GTTGGAAGAAGGAACAAGACTGTTATTAAAAAGCGATAAGAAAGCACGGC
ACGTTGGATTGGCAATCGAAGAGGATGTAATCGAAAAGTAA

protein sequence of Gcaud3440.t1

>Gcaud3440.t1 ID=Gcaud3440.t1|Name=Gcaud3440.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=347bp
MRTFWVQPKSKTALTTSLEHNLTDFIFTDKNFFNECSSIARFNSLFIPQS
GHFENGLYSCITCAQDVTNLLEQAKKCKTIIMGSTDWKIIPAENLIASCQ
QSQTELLAMVHSTQEARSMFGMLQVGVDGCVLQSDNLEEIISFANLKSEM
IDKVGGAIHKLTFATVSNIRPVNMGERVCIDTCSMLAENEGMLIGSSSQA
MFVILSEAAETAYVPSRPFRVNAGAVHSYCALAGGKTKYLAEICAGDEVM
IVSDFGNSSRTAVVGRAKIESRPLLMIEAMVEGDDSNKCTLFVQNAETVR
LAVVDEVGNGSMQSVSTLEEGTRLLLKSDKKARHVGLAIEEDVIEK*

mRNA from alignment at NODE_17_length_79749_cov_4.367006:68026..69066-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3440.t1 ID=Gcaud3440.t1|Name=Gcaud3440.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:68026..69066- (Gracilaria caudata M_176_S67 male)
ATGCGTACCTTTTGGGTGCAACCAAAGTCAAAAACAGCACTAACAACATC
CCTAGAACACAACCTCACCGACTTCATCTTCACCGACAAAAACTTCTTCA
ACGAATGTTCATCCATCGCCCGTTTCAATTCATTGTTTATTCCACAATCC
GGTCATTTCGAAAACGGTCTCTACTCCTGCATAACGTGTGCACAAGACGT
AACCAATCTACTCGAGCAAGCAAAGAAGTGCAAAACCATTATCATGGGTT
CCACGGATTGGAAGATCATCCCTGCAGAAAACCTGATAGCCAGTTGTCAG
CAATCGCAAACCGAGCTTCTTGCTATGGTACACTCTACACAGGAAGCAAG
ATCAATGTTTGGAATGCTCCAGGTCGGTGTAGATGGATGCGTTCTTCAGT
CTGATAACCTTGAAGAGATCATATCGTTTGCTAACTTAAAAAGTGAGATG
ATAGATAAAGTAGGCGGCGCAATACACAAGTTAACGTTCGCCACCGTTTC
CAATATCCGTCCGGTCAACATGGGAGAGCGAGTATGCATCGATACATGTT
CCATGCTCGCCGAGAACGAAGGAATGTTAATAGGTTCTTCATCACAGGCC
ATGTTTGTAATTCTGTCCGAAGCAGCTGAAACAGCTTATGTACCAAGCCG
ACCATTCCGTGTCAATGCCGGAGCCGTACATTCATATTGCGCGCTCGCAG
GAGGAAAGACAAAATATCTAGCTGAGATCTGTGCGGGTGATGAAGTGATG
ATAGTAAGCGATTTCGGAAATAGTAGTCGAACAGCGGTGGTAGGAAGAGC
CAAAATTGAAAGTCGGCCTTTGTTAATGATTGAAGCCATGGTTGAAGGAG
ATGATAGTAACAAGTGTACATTGTTCGTGCAGAACGCAGAAACTGTTAGA
TTGGCTGTGGTTGACGAGGTTGGAAACGGAAGCATGCAAAGTGTGAGCAC
GTTGGAAGAAGGAACAAGACTGTTATTAAAAAGCGATAAGAAAGCACGGC
ACGTTGGATTGGCAATCGAAGAGGATGTAATCGAAAAGTAA

Coding sequence (CDS) from alignment at NODE_17_length_79749_cov_4.367006:68026..69066-

>Gcaud3440.t1 ID=Gcaud3440.t1|Name=Gcaud3440.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1041bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:68026..69066- (Gracilaria caudata M_176_S67 male)
ATGCGTACCTTTTGGGTGCAACCAAAGTCAAAAACAGCACTAACAACATC
CCTAGAACACAACCTCACCGACTTCATCTTCACCGACAAAAACTTCTTCA
ACGAATGTTCATCCATCGCCCGTTTCAATTCATTGTTTATTCCACAATCC
GGTCATTTCGAAAACGGTCTCTACTCCTGCATAACGTGTGCACAAGACGT
AACCAATCTACTCGAGCAAGCAAAGAAGTGCAAAACCATTATCATGGGTT
CCACGGATTGGAAGATCATCCCTGCAGAAAACCTGATAGCCAGTTGTCAG
CAATCGCAAACCGAGCTTCTTGCTATGGTACACTCTACACAGGAAGCAAG
ATCAATGTTTGGAATGCTCCAGGTCGGTGTAGATGGATGCGTTCTTCAGT
CTGATAACCTTGAAGAGATCATATCGTTTGCTAACTTAAAAAGTGAGATG
ATAGATAAAGTAGGCGGCGCAATACACAAGTTAACGTTCGCCACCGTTTC
CAATATCCGTCCGGTCAACATGGGAGAGCGAGTATGCATCGATACATGTT
CCATGCTCGCCGAGAACGAAGGAATGTTAATAGGTTCTTCATCACAGGCC
ATGTTTGTAATTCTGTCCGAAGCAGCTGAAACAGCTTATGTACCAAGCCG
ACCATTCCGTGTCAATGCCGGAGCCGTACATTCATATTGCGCGCTCGCAG
GAGGAAAGACAAAATATCTAGCTGAGATCTGTGCGGGTGATGAAGTGATG
ATAGTAAGCGATTTCGGAAATAGTAGTCGAACAGCGGTGGTAGGAAGAGC
CAAAATTGAAAGTCGGCCTTTGTTAATGATTGAAGCCATGGTTGAAGGAG
ATGATAGTAACAAGTGTACATTGTTCGTGCAGAACGCAGAAACTGTTAGA
TTGGCTGTGGTTGACGAGGTTGGAAACGGAAGCATGCAAAGTGTGAGCAC
GTTGGAAGAAGGAACAAGACTGTTATTAAAAAGCGATAAGAAAGCACGGC
ACGTTGGATTGGCAATCGAAGAGGATGTAATCGAAAAGTAA