Gcaud3438.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3438.t1
Unique Name	Gcaud3438.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	317

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_17_length_79749_cov_4.367006	contig	NODE_17_length_79749_cov_4.367006:67018..67968 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3438	Gcaud3438	Gracilaria caudata M_176_S67 male	gene	NODE_17_length_79749_cov_4.367006 67018..67968 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3438.t1.start1	Gcaud3438.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_17_length_79749_cov_4.367006 67018..67020 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3438.t1.CDS1	Gcaud3438.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_17_length_79749_cov_4.367006 67018..67968 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3438.t1.exon1	Gcaud3438.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_17_length_79749_cov_4.367006 67018..67968 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3438.t1.stop1	Gcaud3438.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_17_length_79749_cov_4.367006 67966..67968 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3438.t1	Gcaud3438.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_17_length_79749_cov_4.367006 67018..67968 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_17_length_79749_cov_4.367006:67018..67968+
coding sequence from alignment at NODE_17_length_79749_cov_4.367006:67018..67968+

mRNA sequence

>Gcaud3438.t1 ID=Gcaud3438.t1|Name=Gcaud3438.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=317bp
MSRKLLCVSLLFFIVVTNAVPVPLSSPPEHVSVREAVARRRHAHHVAFVV
RAAQLAALHRAEEGTMGLESMASEGGKKMDASKIDDALGTKEPKESQQQK
GEPQASEPTQSDPQQSEAKQSEAKQSDPQQSDPQQSDPQQNDPQQNEPQQ
SEPQQSEPQQSEAQQREPQTSEPQQNGTQQSEPQENGTQHGEPPQKDASP
QQQTQSNNSAQPEQPPPSEQEASLSKESVQPPFNPSVSTVGVVGAIATVI
VAAFLLWSKSSNNSISPVQLSNHAYERVGPEIQTNVSAQSSADADGWNAG
WDDDDDWNPEPPSAKV*

spliced messenger RNA

>Gcaud3438.t1 ID=Gcaud3438.t1|Name=Gcaud3438.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=951bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:67018..67968+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGAAAGCTGTTGTGCGTCTCATTGCTTTTCTTCATTGTCGTCAC
CAACGCTGTGCCTGTTCCTCTGTCTTCACCTCCGGAACACGTGTCTGTTC
GAGAGGCGGTCGCTCGAAGGCGACACGCTCATCATGTCGCTTTTGTTGTT
CGTGCGGCTCAGCTCGCTGCTCTTCATCGCGCCGAAGAGGGCACGATGGG
TTTGGAAAGTATGGCAAGTGAGGGAGGGAAGAAGATGGATGCTAGCAAGA
TTGACGATGCATTGGGCACTAAAGAGCCCAAGGAAAGCCAGCAGCAGAAG
GGCGAACCGCAAGCGAGCGAGCCAACGCAGAGCGACCCACAGCAGAGCGA
AGCAAAGCAGAGCGAGGCAAAGCAGAGCGACCCACAGCAGAGCGACCCAC
AGCAGAGCGACCCACAGCAGAACGACCCACAGCAGAACGAACCGCAACAG
AGTGAACCGCAACAGAGTGAACCTCAACAGAGTGAAGCACAACAGAGAGA
ACCGCAAACGAGTGAACCACAACAGAATGGAACACAACAGAGTGAACCAC
AGGAGAATGGAACACAACATGGTGAACCGCCACAAAAGGATGCCAGTCCC
CAGCAGCAAACACAGTCGAACAATAGCGCACAACCCGAGCAACCGCCCCC
AAGTGAGCAAGAAGCTTCACTCTCGAAAGAATCTGTACAACCGCCATTCA
ACCCTTCGGTGTCCACCGTGGGAGTTGTGGGAGCAATTGCAACCGTCATT
GTCGCGGCGTTTCTCTTATGGTCAAAGTCATCCAATAACTCTATATCACC
AGTACAGCTTTCCAATCATGCTTATGAGCGTGTGGGCCCTGAGATTCAAA
CCAATGTTTCCGCGCAGAGCTCTGCTGATGCTGATGGATGGAATGCCGGA
TGGGATGATGATGATGACTGGAATCCAGAGCCACCTAGTGCGAAAGTCTG
A

protein sequence of Gcaud3438.t1

>Gcaud3438.t1 ID=Gcaud3438.t1|Name=Gcaud3438.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=317bp
MSRKLLCVSLLFFIVVTNAVPVPLSSPPEHVSVREAVARRRHAHHVAFVV
RAAQLAALHRAEEGTMGLESMASEGGKKMDASKIDDALGTKEPKESQQQK
GEPQASEPTQSDPQQSEAKQSEAKQSDPQQSDPQQSDPQQNDPQQNEPQQ
SEPQQSEPQQSEAQQREPQTSEPQQNGTQQSEPQENGTQHGEPPQKDASP
QQQTQSNNSAQPEQPPPSEQEASLSKESVQPPFNPSVSTVGVVGAIATVI
VAAFLLWSKSSNNSISPVQLSNHAYERVGPEIQTNVSAQSSADADGWNAG
WDDDDDWNPEPPSAKV*

mRNA from alignment at NODE_17_length_79749_cov_4.367006:67018..67968+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3438.t1 ID=Gcaud3438.t1|Name=Gcaud3438.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=951bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:67018..67968+ (Gracilaria caudata M_176_S67 male)
ATGTCGCGAAAGCTGTTGTGCGTCTCATTGCTTTTCTTCATTGTCGTCAC
CAACGCTGTGCCTGTTCCTCTGTCTTCACCTCCGGAACACGTGTCTGTTC
GAGAGGCGGTCGCTCGAAGGCGACACGCTCATCATGTCGCTTTTGTTGTT
CGTGCGGCTCAGCTCGCTGCTCTTCATCGCGCCGAAGAGGGCACGATGGG
TTTGGAAAGTATGGCAAGTGAGGGAGGGAAGAAGATGGATGCTAGCAAGA
TTGACGATGCATTGGGCACTAAAGAGCCCAAGGAAAGCCAGCAGCAGAAG
GGCGAACCGCAAGCGAGCGAGCCAACGCAGAGCGACCCACAGCAGAGCGA
AGCAAAGCAGAGCGAGGCAAAGCAGAGCGACCCACAGCAGAGCGACCCAC
AGCAGAGCGACCCACAGCAGAACGACCCACAGCAGAACGAACCGCAACAG
AGTGAACCGCAACAGAGTGAACCTCAACAGAGTGAAGCACAACAGAGAGA
ACCGCAAACGAGTGAACCACAACAGAATGGAACACAACAGAGTGAACCAC
AGGAGAATGGAACACAACATGGTGAACCGCCACAAAAGGATGCCAGTCCC
CAGCAGCAAACACAGTCGAACAATAGCGCACAACCCGAGCAACCGCCCCC
AAGTGAGCAAGAAGCTTCACTCTCGAAAGAATCTGTACAACCGCCATTCA
ACCCTTCGGTGTCCACCGTGGGAGTTGTGGGAGCAATTGCAACCGTCATT
GTCGCGGCGTTTCTCTTATGGTCAAAGTCATCCAATAACTCTATATCACC
AGTACAGCTTTCCAATCATGCTTATGAGCGTGTGGGCCCTGAGATTCAAA
CCAATGTTTCCGCGCAGAGCTCTGCTGATGCTGATGGATGGAATGCCGGA
TGGGATGATGATGATGACTGGAATCCAGAGCCACCTAGTGCGAAAGTCTG
A

Coding sequence (CDS) from alignment at NODE_17_length_79749_cov_4.367006:67018..67968+

>Gcaud3438.t1 ID=Gcaud3438.t1|Name=Gcaud3438.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=951bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:67018..67968+ (Gracilaria caudata M_176_S67 male)
ATGTCGCGAAAGCTGTTGTGCGTCTCATTGCTTTTCTTCATTGTCGTCAC
CAACGCTGTGCCTGTTCCTCTGTCTTCACCTCCGGAACACGTGTCTGTTC
GAGAGGCGGTCGCTCGAAGGCGACACGCTCATCATGTCGCTTTTGTTGTT
CGTGCGGCTCAGCTCGCTGCTCTTCATCGCGCCGAAGAGGGCACGATGGG
TTTGGAAAGTATGGCAAGTGAGGGAGGGAAGAAGATGGATGCTAGCAAGA
TTGACGATGCATTGGGCACTAAAGAGCCCAAGGAAAGCCAGCAGCAGAAG
GGCGAACCGCAAGCGAGCGAGCCAACGCAGAGCGACCCACAGCAGAGCGA
AGCAAAGCAGAGCGAGGCAAAGCAGAGCGACCCACAGCAGAGCGACCCAC
AGCAGAGCGACCCACAGCAGAACGACCCACAGCAGAACGAACCGCAACAG
AGTGAACCGCAACAGAGTGAACCTCAACAGAGTGAAGCACAACAGAGAGA
ACCGCAAACGAGTGAACCACAACAGAATGGAACACAACAGAGTGAACCAC
AGGAGAATGGAACACAACATGGTGAACCGCCACAAAAGGATGCCAGTCCC
CAGCAGCAAACACAGTCGAACAATAGCGCACAACCCGAGCAACCGCCCCC
AAGTGAGCAAGAAGCTTCACTCTCGAAAGAATCTGTACAACCGCCATTCA
ACCCTTCGGTGTCCACCGTGGGAGTTGTGGGAGCAATTGCAACCGTCATT
GTCGCGGCGTTTCTCTTATGGTCAAAGTCATCCAATAACTCTATATCACC
AGTACAGCTTTCCAATCATGCTTATGAGCGTGTGGGCCCTGAGATTCAAA
CCAATGTTTCCGCGCAGAGCTCTGCTGATGCTGATGGATGGAATGCCGGA
TGGGATGATGATGATGACTGGAATCCAGAGCCACCTAGTGCGAAAGTCTG
A