Gcaud3432.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3432.t1
Unique NameGcaud3432.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length454
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_17_length_79749_cov_4.367006contigNODE_17_length_79749_cov_4.367006:48504..49865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707040.1
PFAMsADK,Dpy-30
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00939,ko:K13800
KEGG ReactionR00127,R00158,R00512,R01547,R01665,R11319,R11891,R11892
KEGG Pathwayko00230,ko00240,ko00730,ko00983,ko01100,ko01110,ko01130,map00230,map00240,map00730,map00983,map01100,map01110,map01130
KEGG ModuleM00049,M00052
Evalue1.92e-85
EggNOG OGsCOG0563@1|root,KOG3079@2759|Eukaryota
EC2.7.4.14,2.7.4.3
Descriptioncytidylate kinase activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3432Gcaud3432Gracilaria caudata M_176_S67 malegeneNODE_17_length_79749_cov_4.367006 48504..49865 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3432.t1.stop1Gcaud3432.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_17_length_79749_cov_4.367006 48504..48506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3432.t1.CDS1Gcaud3432.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_17_length_79749_cov_4.367006 48504..49865 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3432.t1.exon1Gcaud3432.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_17_length_79749_cov_4.367006 48504..49865 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3432.t1.start1Gcaud3432.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_17_length_79749_cov_4.367006 49863..49865 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3432.t1Gcaud3432.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_17_length_79749_cov_4.367006 48504..49865 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3432.t1 ID=Gcaud3432.t1|Name=Gcaud3432.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=454bp
MRGYNRLPTRTRGIRSTTIPSSPRAATPRRSRETSALPSPSQSKSPIGAL
FSQSASQFPHIDLTETLPRSDHIMTVEVESTLALIKPDAYGRADDIISVI
KHNGFVVAEKKTVNLTKERAGQFYEEHKDRPFFDDLTDFMSSGPAIALVL
RKEYAVKSWRELMGPTNSEKARKQAPESIRAKFGTDGSKNATHGSDSPQS
ASREISFFFPTYHVTAQFNGQDAKEYLTKNVTPLLTTALTEMCRLTPPNA
VEWLGHYLLKAAGIAPVAAKPAKKVYFVLGGPGSGKGTQCAKLVEKFGFD
HFSAGDLLRNEVSSGSEQGKMIGDMIKEGKIVPGEITIGLLKAAIEGSNA
PGVLIDGFPRQLGQAGAFEKDVSDFEFVIFFDCPEEVMETRLLQRGKTSG
RTDDNIESIRKRFNTFVNTSMPVIEYYEAKGKVHRIDATQNIDAVTEVVT
NLF*
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spliced messenger RNA

>Gcaud3432.t1 ID=Gcaud3432.t1|Name=Gcaud3432.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1362bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:48504..49865- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGGGTACAATCGCCTTCCCACACGCACCCGCGGCATACGTTCCAC
CACCATACCGTCATCGCCGCGCGCCGCGACTCCACGCCGTAGCAGAGAGA
CTTCTGCTCTTCCATCCCCTTCGCAATCCAAGTCTCCGATCGGCGCATTG
TTTTCGCAGTCTGCCTCGCAGTTCCCGCACATTGATTTGACAGAAACTTT
GCCTCGGTCTGACCACATCATGACTGTCGAAGTTGAGTCCACTTTGGCGC
TTATTAAGCCAGATGCTTATGGCAGGGCTGATGACATCATTTCTGTTATC
AAGCACAACGGATTTGTCGTTGCTGAGAAAAAGACCGTGAATCTCACCAA
AGAGCGTGCCGGACAGTTTTACGAAGAACACAAGGATCGTCCGTTCTTTG
ACGACCTAACTGATTTCATGTCCTCAGGCCCAGCCATTGCGTTAGTGCTC
CGAAAGGAATACGCCGTCAAGTCCTGGCGAGAGCTCATGGGACCCACAAA
TTCTGAGAAAGCTCGCAAACAAGCGCCAGAGTCAATCCGTGCCAAATTCG
GAACTGACGGTAGCAAGAACGCCACACACGGTTCTGATTCTCCGCAGAGC
GCGTCACGAGAGATTTCGTTTTTCTTCCCTACATACCATGTAACTGCGCA
GTTCAACGGCCAGGATGCCAAGGAGTATCTCACCAAGAATGTCACCCCTC
TTCTCACCACTGCACTGACGGAGATGTGCCGTCTCACGCCGCCGAACGCT
GTCGAATGGCTCGGTCACTACCTGCTAAAGGCCGCCGGCATCGCGCCTGT
TGCTGCCAAGCCCGCAAAGAAGGTATACTTTGTGCTCGGTGGCCCGGGCT
CGGGCAAGGGTACGCAATGCGCCAAGCTTGTTGAGAAGTTTGGATTTGAC
CATTTCTCGGCGGGCGATTTGCTCCGCAACGAGGTTTCTAGCGGCTCGGA
GCAGGGCAAGATGATTGGAGACATGATCAAGGAAGGCAAGATTGTACCTG
GCGAAATCACCATCGGTTTACTTAAGGCTGCCATTGAAGGAAGCAATGCC
CCGGGCGTTTTAATCGACGGATTTCCGCGTCAATTGGGTCAAGCTGGCGC
CTTTGAGAAGGACGTGTCGGACTTTGAGTTTGTGATTTTCTTTGATTGTC
CAGAGGAGGTTATGGAAACACGATTATTGCAAAGAGGAAAGACGAGTGGT
CGTACTGATGACAACATTGAGAGTATTCGCAAGAGATTCAATACTTTTGT
GAATACGTCAATGCCAGTAATCGAATATTATGAGGCAAAGGGTAAGGTTC
ATCGCATTGACGCTACACAGAATATTGACGCCGTCACAGAGGTTGTGACA
AACCTGTTCTAG
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protein sequence of Gcaud3432.t1

>Gcaud3432.t1 ID=Gcaud3432.t1|Name=Gcaud3432.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=454bp
MRGYNRLPTRTRGIRSTTIPSSPRAATPRRSRETSALPSPSQSKSPIGAL
FSQSASQFPHIDLTETLPRSDHIMTVEVESTLALIKPDAYGRADDIISVI
KHNGFVVAEKKTVNLTKERAGQFYEEHKDRPFFDDLTDFMSSGPAIALVL
RKEYAVKSWRELMGPTNSEKARKQAPESIRAKFGTDGSKNATHGSDSPQS
ASREISFFFPTYHVTAQFNGQDAKEYLTKNVTPLLTTALTEMCRLTPPNA
VEWLGHYLLKAAGIAPVAAKPAKKVYFVLGGPGSGKGTQCAKLVEKFGFD
HFSAGDLLRNEVSSGSEQGKMIGDMIKEGKIVPGEITIGLLKAAIEGSNA
PGVLIDGFPRQLGQAGAFEKDVSDFEFVIFFDCPEEVMETRLLQRGKTSG
RTDDNIESIRKRFNTFVNTSMPVIEYYEAKGKVHRIDATQNIDAVTEVVT
NLF*
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mRNA from alignment at NODE_17_length_79749_cov_4.367006:48504..49865-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3432.t1 ID=Gcaud3432.t1|Name=Gcaud3432.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1362bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:48504..49865- (Gracilaria caudata M_176_S67 male)
ATGCGAGGGTACAATCGCCTTCCCACACGCACCCGCGGCATACGTTCCAC
CACCATACCGTCATCGCCGCGCGCCGCGACTCCACGCCGTAGCAGAGAGA
CTTCTGCTCTTCCATCCCCTTCGCAATCCAAGTCTCCGATCGGCGCATTG
TTTTCGCAGTCTGCCTCGCAGTTCCCGCACATTGATTTGACAGAAACTTT
GCCTCGGTCTGACCACATCATGACTGTCGAAGTTGAGTCCACTTTGGCGC
TTATTAAGCCAGATGCTTATGGCAGGGCTGATGACATCATTTCTGTTATC
AAGCACAACGGATTTGTCGTTGCTGAGAAAAAGACCGTGAATCTCACCAA
AGAGCGTGCCGGACAGTTTTACGAAGAACACAAGGATCGTCCGTTCTTTG
ACGACCTAACTGATTTCATGTCCTCAGGCCCAGCCATTGCGTTAGTGCTC
CGAAAGGAATACGCCGTCAAGTCCTGGCGAGAGCTCATGGGACCCACAAA
TTCTGAGAAAGCTCGCAAACAAGCGCCAGAGTCAATCCGTGCCAAATTCG
GAACTGACGGTAGCAAGAACGCCACACACGGTTCTGATTCTCCGCAGAGC
GCGTCACGAGAGATTTCGTTTTTCTTCCCTACATACCATGTAACTGCGCA
GTTCAACGGCCAGGATGCCAAGGAGTATCTCACCAAGAATGTCACCCCTC
TTCTCACCACTGCACTGACGGAGATGTGCCGTCTCACGCCGCCGAACGCT
GTCGAATGGCTCGGTCACTACCTGCTAAAGGCCGCCGGCATCGCGCCTGT
TGCTGCCAAGCCCGCAAAGAAGGTATACTTTGTGCTCGGTGGCCCGGGCT
CGGGCAAGGGTACGCAATGCGCCAAGCTTGTTGAGAAGTTTGGATTTGAC
CATTTCTCGGCGGGCGATTTGCTCCGCAACGAGGTTTCTAGCGGCTCGGA
GCAGGGCAAGATGATTGGAGACATGATCAAGGAAGGCAAGATTGTACCTG
GCGAAATCACCATCGGTTTACTTAAGGCTGCCATTGAAGGAAGCAATGCC
CCGGGCGTTTTAATCGACGGATTTCCGCGTCAATTGGGTCAAGCTGGCGC
CTTTGAGAAGGACGTGTCGGACTTTGAGTTTGTGATTTTCTTTGATTGTC
CAGAGGAGGTTATGGAAACACGATTATTGCAAAGAGGAAAGACGAGTGGT
CGTACTGATGACAACATTGAGAGTATTCGCAAGAGATTCAATACTTTTGT
GAATACGTCAATGCCAGTAATCGAATATTATGAGGCAAAGGGTAAGGTTC
ATCGCATTGACGCTACACAGAATATTGACGCCGTCACAGAGGTTGTGACA
AACCTGTTCTAG
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Coding sequence (CDS) from alignment at NODE_17_length_79749_cov_4.367006:48504..49865-

>Gcaud3432.t1 ID=Gcaud3432.t1|Name=Gcaud3432.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1362bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:48504..49865- (Gracilaria caudata M_176_S67 male)
ATGCGAGGGTACAATCGCCTTCCCACACGCACCCGCGGCATACGTTCCAC
CACCATACCGTCATCGCCGCGCGCCGCGACTCCACGCCGTAGCAGAGAGA
CTTCTGCTCTTCCATCCCCTTCGCAATCCAAGTCTCCGATCGGCGCATTG
TTTTCGCAGTCTGCCTCGCAGTTCCCGCACATTGATTTGACAGAAACTTT
GCCTCGGTCTGACCACATCATGACTGTCGAAGTTGAGTCCACTTTGGCGC
TTATTAAGCCAGATGCTTATGGCAGGGCTGATGACATCATTTCTGTTATC
AAGCACAACGGATTTGTCGTTGCTGAGAAAAAGACCGTGAATCTCACCAA
AGAGCGTGCCGGACAGTTTTACGAAGAACACAAGGATCGTCCGTTCTTTG
ACGACCTAACTGATTTCATGTCCTCAGGCCCAGCCATTGCGTTAGTGCTC
CGAAAGGAATACGCCGTCAAGTCCTGGCGAGAGCTCATGGGACCCACAAA
TTCTGAGAAAGCTCGCAAACAAGCGCCAGAGTCAATCCGTGCCAAATTCG
GAACTGACGGTAGCAAGAACGCCACACACGGTTCTGATTCTCCGCAGAGC
GCGTCACGAGAGATTTCGTTTTTCTTCCCTACATACCATGTAACTGCGCA
GTTCAACGGCCAGGATGCCAAGGAGTATCTCACCAAGAATGTCACCCCTC
TTCTCACCACTGCACTGACGGAGATGTGCCGTCTCACGCCGCCGAACGCT
GTCGAATGGCTCGGTCACTACCTGCTAAAGGCCGCCGGCATCGCGCCTGT
TGCTGCCAAGCCCGCAAAGAAGGTATACTTTGTGCTCGGTGGCCCGGGCT
CGGGCAAGGGTACGCAATGCGCCAAGCTTGTTGAGAAGTTTGGATTTGAC
CATTTCTCGGCGGGCGATTTGCTCCGCAACGAGGTTTCTAGCGGCTCGGA
GCAGGGCAAGATGATTGGAGACATGATCAAGGAAGGCAAGATTGTACCTG
GCGAAATCACCATCGGTTTACTTAAGGCTGCCATTGAAGGAAGCAATGCC
CCGGGCGTTTTAATCGACGGATTTCCGCGTCAATTGGGTCAAGCTGGCGC
CTTTGAGAAGGACGTGTCGGACTTTGAGTTTGTGATTTTCTTTGATTGTC
CAGAGGAGGTTATGGAAACACGATTATTGCAAAGAGGAAAGACGAGTGGT
CGTACTGATGACAACATTGAGAGTATTCGCAAGAGATTCAATACTTTTGT
GAATACGTCAATGCCAGTAATCGAATATTATGAGGCAAAGGGTAAGGTTC
ATCGCATTGACGCTACACAGAATATTGACGCCGTCACAGAGGTTGTGACA
AACCTGTTCTAG
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