Gcaud3429.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3429.t1
Unique Name	Gcaud3429.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	558

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_17_length_79749_cov_4.367006	contig	NODE_17_length_79749_cov_4.367006:42856..44529 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706899.1
PFAMs	Glyco_hydro_2
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01192
KEGG Pathway	ko00511,ko04142,map00511,map04142
Evalue	2.81e-141
EggNOG OGs	COG3250@1\|root,KOG2230@2759\|Eukaryota
EC	3.2.1.25
Description	beta-mannosidase activity
COG category	G
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3429	Gcaud3429	Gracilaria caudata M_176_S67 male	gene	NODE_17_length_79749_cov_4.367006 42856..44529 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3429.t1.start1	Gcaud3429.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_17_length_79749_cov_4.367006 42856..42858 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3429.t1.CDS1	Gcaud3429.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_17_length_79749_cov_4.367006 42856..44529 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3429.t1.exon1	Gcaud3429.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_17_length_79749_cov_4.367006 42856..44529 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3429.t1.stop1	Gcaud3429.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_17_length_79749_cov_4.367006 44527..44529 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3429.t1	Gcaud3429.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_17_length_79749_cov_4.367006 42856..44529 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_17_length_79749_cov_4.367006:42856..44529+
coding sequence from alignment at NODE_17_length_79749_cov_4.367006:42856..44529+

mRNA sequence

>Gcaud3429.t1 ID=Gcaud3429.t1|Name=Gcaud3429.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=558bp
MFCVNGRRFFAKGANYIPSRMQYHLTTEREYERTVSSACAANMNMLRVWG
GGVYESDVFYELCDERGILLWHDFMFSCSLYPGDEHFLESCRQEAQYQVS
RLRHHACMALWCGNNELEQVPHDIVASEQSKRAYDSLFYDILPAVVSNDA
GDVAYWPSSPHNPFGYEKGFNNARAGDTHFWDVWHARKPLSAYLSHVSRF
CSEFGMQSYLSEQGASACVGDAPGALNPFAPGMEAHQKNASGNLIIMEYC
QRLFRAPKDYAAMSYQSQLNQMICMRVGVEHFRRSWPYCAGALYWQLNDC
WPCFSWSSLEFGGNWKALHYGAKSFFAPLLISAVHHGEQTVGVCNLISFS
ADTGLFSVYGTFDGVETQLEVDLCCSLFDLRTNQSTNVVRQTCTVKQDTS
RKLATVDVRDMAANNACTNYVLRVVANSECGRYESSSTAWLCSPRLCDLT
PPKLTMTHQKLRVENGKSRCVLEIGCRTFAPFVQITLKHPSEAIDGGAEE
GGHARYVAPVRYELSDNYFDLFPGEVKQVQLTVFQDTSDELVFPNLSVQS
LVDSYMT*

spliced messenger RNA

>Gcaud3429.t1 ID=Gcaud3429.t1|Name=Gcaud3429.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1674bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:42856..44529+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTGCGTCAATGGGCGCCGCTTTTTCGCAAAGGGCGCCAACTACAT
TCCGAGCAGAATGCAGTATCACCTCACCACGGAGCGCGAGTACGAACGCA
CCGTTTCTTCGGCTTGCGCCGCCAATATGAACATGCTGCGCGTGTGGGGC
GGCGGTGTTTATGAGAGCGATGTGTTTTACGAGCTGTGCGATGAGCGCGG
CATTCTGCTGTGGCATGACTTTATGTTTTCGTGTTCGTTGTATCCGGGCG
ATGAGCACTTTCTCGAGTCGTGTCGGCAGGAAGCGCAGTACCAAGTGTCG
CGTCTTCGTCACCACGCGTGCATGGCGCTGTGGTGTGGAAACAATGAACT
GGAACAAGTGCCACATGACATTGTCGCTTCCGAACAATCGAAGCGTGCTT
ATGATAGCTTGTTTTACGACATTCTGCCCGCGGTGGTGAGCAATGACGCG
GGCGATGTTGCGTACTGGCCGTCCAGCCCGCATAACCCTTTTGGCTACGA
AAAGGGCTTCAACAACGCGCGCGCGGGAGATACGCACTTTTGGGATGTGT
GGCACGCGAGGAAACCACTCAGCGCGTACCTGTCGCATGTGTCGCGCTTT
TGCAGCGAGTTTGGAATGCAGTCGTATCTGTCGGAACAGGGCGCCAGCGC
GTGCGTGGGCGACGCGCCCGGTGCGCTCAACCCGTTCGCACCGGGCATGG
AGGCGCACCAGAAGAACGCCAGCGGTAACCTGATCATCATGGAGTACTGC
CAACGGCTGTTCCGCGCGCCAAAGGATTATGCGGCGATGAGTTATCAGTC
GCAGCTCAACCAAATGATATGCATGCGCGTGGGCGTGGAGCACTTTCGCC
GGAGCTGGCCTTATTGCGCGGGCGCTCTGTACTGGCAGTTGAATGATTGC
TGGCCGTGTTTCTCGTGGAGCAGTTTGGAGTTTGGCGGCAACTGGAAGGC
GCTGCATTATGGAGCGAAGAGCTTCTTTGCGCCGCTGTTGATCAGCGCTG
TACATCATGGAGAGCAAACCGTTGGCGTTTGTAATTTGATCTCGTTCAGC
GCTGATACCGGCTTGTTTTCTGTATACGGCACTTTTGATGGCGTGGAGAC
GCAGCTTGAGGTCGACTTGTGTTGCAGCTTGTTCGACCTGCGCACGAATC
AGAGCACAAACGTTGTGCGGCAGACGTGCACCGTAAAACAGGACACTTCG
CGCAAGCTCGCTACCGTCGATGTGCGCGATATGGCTGCCAACAACGCGTG
CACCAACTACGTTTTGCGCGTTGTGGCAAACAGCGAGTGCGGTCGGTATG
AATCGAGTTCGACTGCTTGGCTGTGCTCTCCCCGTCTGTGCGATTTAACT
CCCCCCAAACTGACAATGACGCACCAAAAGCTGCGCGTTGAGAACGGCAA
GAGCCGCTGTGTGCTGGAAATTGGGTGCCGCACGTTTGCACCGTTTGTGC
AAATCACCTTGAAACACCCGAGCGAAGCCATTGATGGTGGCGCTGAGGAA
GGTGGCCATGCGCGCTATGTCGCGCCTGTGAGGTACGAATTGTCGGACAA
CTATTTTGACCTGTTCCCGGGTGAGGTGAAACAGGTGCAACTCACAGTGT
TCCAAGACACTAGCGATGAGCTTGTGTTTCCCAACCTGTCGGTTCAGAGT
CTTGTCGACTCTTACATGACGTGA

protein sequence of Gcaud3429.t1

>Gcaud3429.t1 ID=Gcaud3429.t1|Name=Gcaud3429.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=558bp
MFCVNGRRFFAKGANYIPSRMQYHLTTEREYERTVSSACAANMNMLRVWG
GGVYESDVFYELCDERGILLWHDFMFSCSLYPGDEHFLESCRQEAQYQVS
RLRHHACMALWCGNNELEQVPHDIVASEQSKRAYDSLFYDILPAVVSNDA
GDVAYWPSSPHNPFGYEKGFNNARAGDTHFWDVWHARKPLSAYLSHVSRF
CSEFGMQSYLSEQGASACVGDAPGALNPFAPGMEAHQKNASGNLIIMEYC
QRLFRAPKDYAAMSYQSQLNQMICMRVGVEHFRRSWPYCAGALYWQLNDC
WPCFSWSSLEFGGNWKALHYGAKSFFAPLLISAVHHGEQTVGVCNLISFS
ADTGLFSVYGTFDGVETQLEVDLCCSLFDLRTNQSTNVVRQTCTVKQDTS
RKLATVDVRDMAANNACTNYVLRVVANSECGRYESSSTAWLCSPRLCDLT
PPKLTMTHQKLRVENGKSRCVLEIGCRTFAPFVQITLKHPSEAIDGGAEE
GGHARYVAPVRYELSDNYFDLFPGEVKQVQLTVFQDTSDELVFPNLSVQS
LVDSYMT*

mRNA from alignment at NODE_17_length_79749_cov_4.367006:42856..44529+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3429.t1 ID=Gcaud3429.t1|Name=Gcaud3429.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1674bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:42856..44529+ (Gracilaria caudata M_176_S67 male)
ATGTTTTGCGTCAATGGGCGCCGCTTTTTCGCAAAGGGCGCCAACTACAT
TCCGAGCAGAATGCAGTATCACCTCACCACGGAGCGCGAGTACGAACGCA
CCGTTTCTTCGGCTTGCGCCGCCAATATGAACATGCTGCGCGTGTGGGGC
GGCGGTGTTTATGAGAGCGATGTGTTTTACGAGCTGTGCGATGAGCGCGG
CATTCTGCTGTGGCATGACTTTATGTTTTCGTGTTCGTTGTATCCGGGCG
ATGAGCACTTTCTCGAGTCGTGTCGGCAGGAAGCGCAGTACCAAGTGTCG
CGTCTTCGTCACCACGCGTGCATGGCGCTGTGGTGTGGAAACAATGAACT
GGAACAAGTGCCACATGACATTGTCGCTTCCGAACAATCGAAGCGTGCTT
ATGATAGCTTGTTTTACGACATTCTGCCCGCGGTGGTGAGCAATGACGCG
GGCGATGTTGCGTACTGGCCGTCCAGCCCGCATAACCCTTTTGGCTACGA
AAAGGGCTTCAACAACGCGCGCGCGGGAGATACGCACTTTTGGGATGTGT
GGCACGCGAGGAAACCACTCAGCGCGTACCTGTCGCATGTGTCGCGCTTT
TGCAGCGAGTTTGGAATGCAGTCGTATCTGTCGGAACAGGGCGCCAGCGC
GTGCGTGGGCGACGCGCCCGGTGCGCTCAACCCGTTCGCACCGGGCATGG
AGGCGCACCAGAAGAACGCCAGCGGTAACCTGATCATCATGGAGTACTGC
CAACGGCTGTTCCGCGCGCCAAAGGATTATGCGGCGATGAGTTATCAGTC
GCAGCTCAACCAAATGATATGCATGCGCGTGGGCGTGGAGCACTTTCGCC
GGAGCTGGCCTTATTGCGCGGGCGCTCTGTACTGGCAGTTGAATGATTGC
TGGCCGTGTTTCTCGTGGAGCAGTTTGGAGTTTGGCGGCAACTGGAAGGC
GCTGCATTATGGAGCGAAGAGCTTCTTTGCGCCGCTGTTGATCAGCGCTG
TACATCATGGAGAGCAAACCGTTGGCGTTTGTAATTTGATCTCGTTCAGC
GCTGATACCGGCTTGTTTTCTGTATACGGCACTTTTGATGGCGTGGAGAC
GCAGCTTGAGGTCGACTTGTGTTGCAGCTTGTTCGACCTGCGCACGAATC
AGAGCACAAACGTTGTGCGGCAGACGTGCACCGTAAAACAGGACACTTCG
CGCAAGCTCGCTACCGTCGATGTGCGCGATATGGCTGCCAACAACGCGTG
CACCAACTACGTTTTGCGCGTTGTGGCAAACAGCGAGTGCGGTCGGTATG
AATCGAGTTCGACTGCTTGGCTGTGCTCTCCCCGTCTGTGCGATTTAACT
CCCCCCAAACTGACAATGACGCACCAAAAGCTGCGCGTTGAGAACGGCAA
GAGCCGCTGTGTGCTGGAAATTGGGTGCCGCACGTTTGCACCGTTTGTGC
AAATCACCTTGAAACACCCGAGCGAAGCCATTGATGGTGGCGCTGAGGAA
GGTGGCCATGCGCGCTATGTCGCGCCTGTGAGGTACGAATTGTCGGACAA
CTATTTTGACCTGTTCCCGGGTGAGGTGAAACAGGTGCAACTCACAGTGT
TCCAAGACACTAGCGATGAGCTTGTGTTTCCCAACCTGTCGGTTCAGAGT
CTTGTCGACTCTTACATGACGTGA

Coding sequence (CDS) from alignment at NODE_17_length_79749_cov_4.367006:42856..44529+

>Gcaud3429.t1 ID=Gcaud3429.t1|Name=Gcaud3429.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1674bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:42856..44529+ (Gracilaria caudata M_176_S67 male)
ATGTTTTGCGTCAATGGGCGCCGCTTTTTCGCAAAGGGCGCCAACTACAT
TCCGAGCAGAATGCAGTATCACCTCACCACGGAGCGCGAGTACGAACGCA
CCGTTTCTTCGGCTTGCGCCGCCAATATGAACATGCTGCGCGTGTGGGGC
GGCGGTGTTTATGAGAGCGATGTGTTTTACGAGCTGTGCGATGAGCGCGG
CATTCTGCTGTGGCATGACTTTATGTTTTCGTGTTCGTTGTATCCGGGCG
ATGAGCACTTTCTCGAGTCGTGTCGGCAGGAAGCGCAGTACCAAGTGTCG
CGTCTTCGTCACCACGCGTGCATGGCGCTGTGGTGTGGAAACAATGAACT
GGAACAAGTGCCACATGACATTGTCGCTTCCGAACAATCGAAGCGTGCTT
ATGATAGCTTGTTTTACGACATTCTGCCCGCGGTGGTGAGCAATGACGCG
GGCGATGTTGCGTACTGGCCGTCCAGCCCGCATAACCCTTTTGGCTACGA
AAAGGGCTTCAACAACGCGCGCGCGGGAGATACGCACTTTTGGGATGTGT
GGCACGCGAGGAAACCACTCAGCGCGTACCTGTCGCATGTGTCGCGCTTT
TGCAGCGAGTTTGGAATGCAGTCGTATCTGTCGGAACAGGGCGCCAGCGC
GTGCGTGGGCGACGCGCCCGGTGCGCTCAACCCGTTCGCACCGGGCATGG
AGGCGCACCAGAAGAACGCCAGCGGTAACCTGATCATCATGGAGTACTGC
CAACGGCTGTTCCGCGCGCCAAAGGATTATGCGGCGATGAGTTATCAGTC
GCAGCTCAACCAAATGATATGCATGCGCGTGGGCGTGGAGCACTTTCGCC
GGAGCTGGCCTTATTGCGCGGGCGCTCTGTACTGGCAGTTGAATGATTGC
TGGCCGTGTTTCTCGTGGAGCAGTTTGGAGTTTGGCGGCAACTGGAAGGC
GCTGCATTATGGAGCGAAGAGCTTCTTTGCGCCGCTGTTGATCAGCGCTG
TACATCATGGAGAGCAAACCGTTGGCGTTTGTAATTTGATCTCGTTCAGC
GCTGATACCGGCTTGTTTTCTGTATACGGCACTTTTGATGGCGTGGAGAC
GCAGCTTGAGGTCGACTTGTGTTGCAGCTTGTTCGACCTGCGCACGAATC
AGAGCACAAACGTTGTGCGGCAGACGTGCACCGTAAAACAGGACACTTCG
CGCAAGCTCGCTACCGTCGATGTGCGCGATATGGCTGCCAACAACGCGTG
CACCAACTACGTTTTGCGCGTTGTGGCAAACAGCGAGTGCGGTCGGTATG
AATCGAGTTCGACTGCTTGGCTGTGCTCTCCCCGTCTGTGCGATTTAACT
CCCCCCAAACTGACAATGACGCACCAAAAGCTGCGCGTTGAGAACGGCAA
GAGCCGCTGTGTGCTGGAAATTGGGTGCCGCACGTTTGCACCGTTTGTGC
AAATCACCTTGAAACACCCGAGCGAAGCCATTGATGGTGGCGCTGAGGAA
GGTGGCCATGCGCGCTATGTCGCGCCTGTGAGGTACGAATTGTCGGACAA
CTATTTTGACCTGTTCCCGGGTGAGGTGAAACAGGTGCAACTCACAGTGT
TCCAAGACACTAGCGATGAGCTTGTGTTTCCCAACCTGTCGGTTCAGAGT
CTTGTCGACTCTTACATGACGTGA