Gcaud3427.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3427.t1
Unique NameGcaud3427.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length169
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_17_length_79749_cov_4.367006contigNODE_17_length_79749_cov_4.367006:38907..39413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS050CT
PFAMsTIC20
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042170,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Evalue6.82e-39
EggNOG OGs2BYWW@1|root,2QUSD@2759|Eukaryota
Descriptionprotein transport
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3427Gcaud3427Gracilaria caudata M_176_S67 malegeneNODE_17_length_79749_cov_4.367006 38907..39413 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3427.t1.start1Gcaud3427.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_17_length_79749_cov_4.367006 38907..38909 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3427.t1.CDS1Gcaud3427.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_17_length_79749_cov_4.367006 38907..39413 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3427.t1.exon1Gcaud3427.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_17_length_79749_cov_4.367006 38907..39413 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3427.t1.stop1Gcaud3427.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_17_length_79749_cov_4.367006 39411..39413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3427.t1Gcaud3427.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_17_length_79749_cov_4.367006 38907..39413 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3427.t1 ID=Gcaud3427.t1|Name=Gcaud3427.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=169bp
MRWSPSGGGGSSIPPAERALSTLPYLIPLLDSLSFGTFVFRRVPLLANVL
LTPLLPLYNVYRGVPFLAFGVFLLLFVLVVRNVNVSRFVRFNTYQALIVD
IALILPQLFQGVRLGAAVPAGVVEICTTAVFYAVMMVVCYAVVMNVQGKL
PDEIPAVSDSVKQQLGPY*
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spliced messenger RNA

>Gcaud3427.t1 ID=Gcaud3427.t1|Name=Gcaud3427.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=507bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:38907..39413+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGATGGTCGCCGTCGGGCGGCGGCGGGAGCTCCATTCCGCCCGCAGA
GCGCGCGCTGTCCACGCTGCCGTACCTGATCCCGCTGCTGGACTCGCTGT
CGTTCGGCACGTTTGTGTTCCGGCGCGTGCCGCTGCTGGCGAATGTGTTG
CTCACACCGCTGCTGCCTTTGTACAACGTGTACCGCGGCGTGCCGTTTCT
GGCGTTTGGCGTGTTTCTGCTGCTGTTTGTGCTGGTGGTGAGGAACGTGA
ACGTGTCGCGTTTCGTGCGCTTCAACACGTACCAGGCGCTGATTGTGGAC
ATTGCGCTCATTCTACCGCAGCTGTTTCAGGGCGTGAGACTGGGCGCGGC
GGTGCCCGCTGGCGTGGTGGAGATTTGCACCACGGCGGTGTTTTACGCGG
TGATGATGGTGGTGTGCTACGCAGTGGTTATGAACGTGCAAGGCAAGTTA
CCCGACGAGATCCCCGCGGTGAGCGACTCGGTCAAACAACAACTAGGTCC
GTACTAA
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protein sequence of Gcaud3427.t1

>Gcaud3427.t1 ID=Gcaud3427.t1|Name=Gcaud3427.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=169bp
MRWSPSGGGGSSIPPAERALSTLPYLIPLLDSLSFGTFVFRRVPLLANVL
LTPLLPLYNVYRGVPFLAFGVFLLLFVLVVRNVNVSRFVRFNTYQALIVD
IALILPQLFQGVRLGAAVPAGVVEICTTAVFYAVMMVVCYAVVMNVQGKL
PDEIPAVSDSVKQQLGPY*
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mRNA from alignment at NODE_17_length_79749_cov_4.367006:38907..39413+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3427.t1 ID=Gcaud3427.t1|Name=Gcaud3427.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=507bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:38907..39413+ (Gracilaria caudata M_176_S67 male)
ATGCGATGGTCGCCGTCGGGCGGCGGCGGGAGCTCCATTCCGCCCGCAGA
GCGCGCGCTGTCCACGCTGCCGTACCTGATCCCGCTGCTGGACTCGCTGT
CGTTCGGCACGTTTGTGTTCCGGCGCGTGCCGCTGCTGGCGAATGTGTTG
CTCACACCGCTGCTGCCTTTGTACAACGTGTACCGCGGCGTGCCGTTTCT
GGCGTTTGGCGTGTTTCTGCTGCTGTTTGTGCTGGTGGTGAGGAACGTGA
ACGTGTCGCGTTTCGTGCGCTTCAACACGTACCAGGCGCTGATTGTGGAC
ATTGCGCTCATTCTACCGCAGCTGTTTCAGGGCGTGAGACTGGGCGCGGC
GGTGCCCGCTGGCGTGGTGGAGATTTGCACCACGGCGGTGTTTTACGCGG
TGATGATGGTGGTGTGCTACGCAGTGGTTATGAACGTGCAAGGCAAGTTA
CCCGACGAGATCCCCGCGGTGAGCGACTCGGTCAAACAACAACTAGGTCC
GTACTAA
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Coding sequence (CDS) from alignment at NODE_17_length_79749_cov_4.367006:38907..39413+

>Gcaud3427.t1 ID=Gcaud3427.t1|Name=Gcaud3427.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=507bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:38907..39413+ (Gracilaria caudata M_176_S67 male)
ATGCGATGGTCGCCGTCGGGCGGCGGCGGGAGCTCCATTCCGCCCGCAGA
GCGCGCGCTGTCCACGCTGCCGTACCTGATCCCGCTGCTGGACTCGCTGT
CGTTCGGCACGTTTGTGTTCCGGCGCGTGCCGCTGCTGGCGAATGTGTTG
CTCACACCGCTGCTGCCTTTGTACAACGTGTACCGCGGCGTGCCGTTTCT
GGCGTTTGGCGTGTTTCTGCTGCTGTTTGTGCTGGTGGTGAGGAACGTGA
ACGTGTCGCGTTTCGTGCGCTTCAACACGTACCAGGCGCTGATTGTGGAC
ATTGCGCTCATTCTACCGCAGCTGTTTCAGGGCGTGAGACTGGGCGCGGC
GGTGCCCGCTGGCGTGGTGGAGATTTGCACCACGGCGGTGTTTTACGCGG
TGATGATGGTGGTGTGCTACGCAGTGGTTATGAACGTGCAAGGCAAGTTA
CCCGACGAGATCCCCGCGGTGAGCGACTCGGTCAAACAACAACTAGGTCC
GTACTAA
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