Gcaud3423.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3423.t1
Unique Name	Gcaud3423.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	613

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_17_length_79749_cov_4.367006	contig	NODE_17_length_79749_cov_4.367006:25150..26988 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	29760.VIT_10s0523g00030.t01
PFAMs	WD40,zf-C3HC4_2
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K10143
KEGG Pathway	ko04115,ko04120,ko04712,map04115,map04120,map04712
GOs	GO:0000003,GO:0000151,GO:0000152,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006281,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009639,GO:0009640,GO:0009641,GO:0009642,GO:0009646,GO:0009647,GO:0009648,GO:0009649,GO:0009791,GO:0009812,GO:0009987,GO:0010119,GO:0010228,GO:0016567,GO:0016604,GO:0016740,GO:0019538,GO:0019787,GO:0022414,GO:0031461,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034641,GO:0036211,GO:0042440,GO:0042752,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046283,GO:0046483,GO:0048573,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061458,GO:0061630,GO:0061659,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0080008,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1990234
Evalue	7.79e-92
EggNOG OGs	KOG0297@1\|root,KOG0297@2759\|Eukaryota,37JG1@33090\|Viridiplantae,3GD8D@35493\|Streptophyta
EC	2.3.2.27
Description	E3 ubiquitin-protein ligase
COG category	T
BRITE	ko00000,ko00001,ko01000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3423	Gcaud3423	Gracilaria caudata M_176_S67 male	gene	NODE_17_length_79749_cov_4.367006 25150..26988 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3423.t1.stop1	Gcaud3423.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_17_length_79749_cov_4.367006 25150..25152 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3423.t1.CDS1	Gcaud3423.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_17_length_79749_cov_4.367006 25150..26988 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3423.t1.exon1	Gcaud3423.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_17_length_79749_cov_4.367006 25150..26988 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3423.t1.start1	Gcaud3423.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_17_length_79749_cov_4.367006 26986..26988 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3423.t1	Gcaud3423.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_17_length_79749_cov_4.367006 25150..26988 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_17_length_79749_cov_4.367006:25150..26988-
coding sequence from alignment at NODE_17_length_79749_cov_4.367006:25150..26988-

mRNA sequence

>Gcaud3423.t1 ID=Gcaud3423.t1|Name=Gcaud3423.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=613bp
MLTPATHTPPRTPEAPAAAHRSSPPPLNPRPRPQLRADAAERRARAQAVA
DAAVASLSTPRTPLAPPRVRQLVVQHTPPPPPPPPRASLMRSEQLLAAGE
QLNAEQLAGVIAKLQQKLEQKEDVERRVENDLLLDFLRHVRTVKQGMINR
LQREVSLLDDDVNAAELHRARFGTPETSSATSCASEQRREGVALENNSPS
TDVISRDPRFTKKRKRLSRNYDVLQSHYFSTVASQKGEKRARALKSFKDD
ISKLTQFTRFRDTATLMHVARVPDAPCRDVFKVSNIVSSIEFDRESELLA
TAGVTKRIKIFEFSNVTRNLSDTHYPIREIKTNAKLSWICWNPYIRHLLV
SSDYEGVVALWDVSQAKALRVYEEHERRVWSVDYCPSKPTVFASGSDDCR
VKLWCTSQRSSVLTIDNSPANVCSVKFHPTAPEKIAFGSVDFGIHYYDLR
MFKQPLHVFKSHTRAVSYVKFMSPSSLVSASVDSTVKLWDLNTMTLERNF
TGHTNDRNFVGLSVTPDYIACGSEEDMVYCYYKAIPRPFTGYRFSSVDPL
TGKEIQDDDDESQFVSSVCWCPKDPTKLVAANSLGTIKVLSLEADDKDDD
DDDGNGEERKGD*

spliced messenger RNA

>Gcaud3423.t1 ID=Gcaud3423.t1|Name=Gcaud3423.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1839bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:25150..26988- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGACGCCCGCCACGCACACCCCGCCGCGCACGCCCGAGGCGCCGGC
CGCCGCGCACCGCTCGTCTCCGCCGCCGCTCAACCCGCGTCCGCGTCCGC
AGCTGCGCGCCGACGCCGCGGAGCGTCGCGCGCGCGCGCAGGCGGTGGCC
GACGCCGCCGTGGCCAGCTTGTCCACGCCCAGAACGCCTCTTGCGCCGCC
GCGCGTGCGTCAGCTGGTTGTGCAGCATACACCGCCGCCGCCGCCACCAC
CACCGCGCGCGTCGCTAATGCGCAGCGAGCAGTTGTTGGCCGCTGGCGAG
CAACTCAACGCGGAGCAGCTGGCTGGCGTCATTGCGAAACTGCAGCAGAA
GCTCGAGCAGAAGGAGGATGTGGAGCGACGAGTGGAAAACGACCTCTTGT
TGGACTTTCTTCGACATGTGCGCACCGTCAAACAGGGCATGATTAACAGG
TTGCAGCGCGAGGTTTCTCTTCTAGATGATGATGTGAATGCCGCCGAGTT
GCATCGTGCCCGCTTCGGCACCCCGGAAACCTCGTCAGCCACCAGCTGCG
CGTCTGAACAGCGTCGTGAGGGCGTTGCATTGGAGAACAACTCGCCGTCA
ACCGATGTCATTTCGAGGGACCCGCGCTTTACGAAGAAGAGAAAACGACT
GTCCAGGAATTATGACGTGCTACAGAGTCATTACTTTTCGACCGTGGCCT
CTCAAAAGGGCGAGAAGCGAGCGAGGGCACTGAAGTCCTTCAAGGATGAC
ATATCTAAACTTACGCAATTTACCCGTTTTCGCGATACTGCCACTCTGAT
GCACGTGGCTCGCGTTCCAGATGCACCGTGTCGAGATGTTTTCAAGGTGT
CTAACATTGTTTCCTCCATCGAATTTGATCGTGAATCCGAGTTGCTAGCC
ACTGCTGGAGTCACTAAGCGCATCAAGATATTTGAGTTCTCGAACGTTAC
GCGAAACCTGTCAGATACTCACTATCCCATCCGAGAGATCAAGACCAACG
CGAAGCTTAGTTGGATTTGCTGGAATCCGTACATCAGACACCTGTTAGTG
TCGTCGGACTACGAGGGCGTCGTTGCTCTTTGGGACGTTAGTCAAGCAAA
GGCGCTGCGCGTTTACGAAGAACATGAGCGACGCGTTTGGAGCGTCGATT
ATTGTCCGTCCAAACCCACCGTGTTTGCGTCGGGCTCTGATGACTGTCGT
GTCAAGCTGTGGTGCACCTCGCAAAGGTCCAGCGTTCTTACCATTGACAA
CTCACCGGCAAATGTATGCTCTGTCAAGTTTCACCCCACGGCTCCAGAGA
AAATCGCGTTTGGAAGCGTCGACTTTGGAATTCATTACTATGATCTTCGC
ATGTTCAAGCAGCCTCTTCACGTGTTCAAGTCGCATACTCGCGCCGTCAG
TTACGTCAAATTCATGTCGCCATCGTCATTGGTGTCTGCTTCGGTGGACT
CTACTGTTAAACTGTGGGATCTTAACACCATGACGCTGGAACGAAATTTC
ACAGGGCATACGAACGACAGAAACTTTGTCGGGCTCAGTGTCACTCCGGA
TTATATCGCGTGCGGCTCTGAAGAGGATATGGTGTATTGTTACTACAAGG
CAATTCCGAGACCTTTTACCGGCTACCGGTTTTCGAGTGTAGACCCATTG
ACTGGGAAGGAGATTCAGGATGACGATGATGAGTCGCAATTTGTGAGCAG
TGTGTGCTGGTGTCCAAAGGACCCGACGAAACTTGTTGCTGCCAACAGTT
TGGGCACAATCAAGGTTTTGTCGCTTGAGGCTGACGACAAAGATGATGAT
GATGATGATGGCAATGGTGAAGAACGGAAGGGTGACTGA

protein sequence of Gcaud3423.t1

>Gcaud3423.t1 ID=Gcaud3423.t1|Name=Gcaud3423.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=613bp
MLTPATHTPPRTPEAPAAAHRSSPPPLNPRPRPQLRADAAERRARAQAVA
DAAVASLSTPRTPLAPPRVRQLVVQHTPPPPPPPPRASLMRSEQLLAAGE
QLNAEQLAGVIAKLQQKLEQKEDVERRVENDLLLDFLRHVRTVKQGMINR
LQREVSLLDDDVNAAELHRARFGTPETSSATSCASEQRREGVALENNSPS
TDVISRDPRFTKKRKRLSRNYDVLQSHYFSTVASQKGEKRARALKSFKDD
ISKLTQFTRFRDTATLMHVARVPDAPCRDVFKVSNIVSSIEFDRESELLA
TAGVTKRIKIFEFSNVTRNLSDTHYPIREIKTNAKLSWICWNPYIRHLLV
SSDYEGVVALWDVSQAKALRVYEEHERRVWSVDYCPSKPTVFASGSDDCR
VKLWCTSQRSSVLTIDNSPANVCSVKFHPTAPEKIAFGSVDFGIHYYDLR
MFKQPLHVFKSHTRAVSYVKFMSPSSLVSASVDSTVKLWDLNTMTLERNF
TGHTNDRNFVGLSVTPDYIACGSEEDMVYCYYKAIPRPFTGYRFSSVDPL
TGKEIQDDDDESQFVSSVCWCPKDPTKLVAANSLGTIKVLSLEADDKDDD
DDDGNGEERKGD*

mRNA from alignment at NODE_17_length_79749_cov_4.367006:25150..26988-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3423.t1 ID=Gcaud3423.t1|Name=Gcaud3423.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1839bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:25150..26988- (Gracilaria caudata M_176_S67 male)
ATGTTGACGCCCGCCACGCACACCCCGCCGCGCACGCCCGAGGCGCCGGC
CGCCGCGCACCGCTCGTCTCCGCCGCCGCTCAACCCGCGTCCGCGTCCGC
AGCTGCGCGCCGACGCCGCGGAGCGTCGCGCGCGCGCGCAGGCGGTGGCC
GACGCCGCCGTGGCCAGCTTGTCCACGCCCAGAACGCCTCTTGCGCCGCC
GCGCGTGCGTCAGCTGGTTGTGCAGCATACACCGCCGCCGCCGCCACCAC
CACCGCGCGCGTCGCTAATGCGCAGCGAGCAGTTGTTGGCCGCTGGCGAG
CAACTCAACGCGGAGCAGCTGGCTGGCGTCATTGCGAAACTGCAGCAGAA
GCTCGAGCAGAAGGAGGATGTGGAGCGACGAGTGGAAAACGACCTCTTGT
TGGACTTTCTTCGACATGTGCGCACCGTCAAACAGGGCATGATTAACAGG
TTGCAGCGCGAGGTTTCTCTTCTAGATGATGATGTGAATGCCGCCGAGTT
GCATCGTGCCCGCTTCGGCACCCCGGAAACCTCGTCAGCCACCAGCTGCG
CGTCTGAACAGCGTCGTGAGGGCGTTGCATTGGAGAACAACTCGCCGTCA
ACCGATGTCATTTCGAGGGACCCGCGCTTTACGAAGAAGAGAAAACGACT
GTCCAGGAATTATGACGTGCTACAGAGTCATTACTTTTCGACCGTGGCCT
CTCAAAAGGGCGAGAAGCGAGCGAGGGCACTGAAGTCCTTCAAGGATGAC
ATATCTAAACTTACGCAATTTACCCGTTTTCGCGATACTGCCACTCTGAT
GCACGTGGCTCGCGTTCCAGATGCACCGTGTCGAGATGTTTTCAAGGTGT
CTAACATTGTTTCCTCCATCGAATTTGATCGTGAATCCGAGTTGCTAGCC
ACTGCTGGAGTCACTAAGCGCATCAAGATATTTGAGTTCTCGAACGTTAC
GCGAAACCTGTCAGATACTCACTATCCCATCCGAGAGATCAAGACCAACG
CGAAGCTTAGTTGGATTTGCTGGAATCCGTACATCAGACACCTGTTAGTG
TCGTCGGACTACGAGGGCGTCGTTGCTCTTTGGGACGTTAGTCAAGCAAA
GGCGCTGCGCGTTTACGAAGAACATGAGCGACGCGTTTGGAGCGTCGATT
ATTGTCCGTCCAAACCCACCGTGTTTGCGTCGGGCTCTGATGACTGTCGT
GTCAAGCTGTGGTGCACCTCGCAAAGGTCCAGCGTTCTTACCATTGACAA
CTCACCGGCAAATGTATGCTCTGTCAAGTTTCACCCCACGGCTCCAGAGA
AAATCGCGTTTGGAAGCGTCGACTTTGGAATTCATTACTATGATCTTCGC
ATGTTCAAGCAGCCTCTTCACGTGTTCAAGTCGCATACTCGCGCCGTCAG
TTACGTCAAATTCATGTCGCCATCGTCATTGGTGTCTGCTTCGGTGGACT
CTACTGTTAAACTGTGGGATCTTAACACCATGACGCTGGAACGAAATTTC
ACAGGGCATACGAACGACAGAAACTTTGTCGGGCTCAGTGTCACTCCGGA
TTATATCGCGTGCGGCTCTGAAGAGGATATGGTGTATTGTTACTACAAGG
CAATTCCGAGACCTTTTACCGGCTACCGGTTTTCGAGTGTAGACCCATTG
ACTGGGAAGGAGATTCAGGATGACGATGATGAGTCGCAATTTGTGAGCAG
TGTGTGCTGGTGTCCAAAGGACCCGACGAAACTTGTTGCTGCCAACAGTT
TGGGCACAATCAAGGTTTTGTCGCTTGAGGCTGACGACAAAGATGATGAT
GATGATGATGGCAATGGTGAAGAACGGAAGGGTGACTGA

Coding sequence (CDS) from alignment at NODE_17_length_79749_cov_4.367006:25150..26988-

>Gcaud3423.t1 ID=Gcaud3423.t1|Name=Gcaud3423.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1839bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:25150..26988- (Gracilaria caudata M_176_S67 male)
ATGTTGACGCCCGCCACGCACACCCCGCCGCGCACGCCCGAGGCGCCGGC
CGCCGCGCACCGCTCGTCTCCGCCGCCGCTCAACCCGCGTCCGCGTCCGC
AGCTGCGCGCCGACGCCGCGGAGCGTCGCGCGCGCGCGCAGGCGGTGGCC
GACGCCGCCGTGGCCAGCTTGTCCACGCCCAGAACGCCTCTTGCGCCGCC
GCGCGTGCGTCAGCTGGTTGTGCAGCATACACCGCCGCCGCCGCCACCAC
CACCGCGCGCGTCGCTAATGCGCAGCGAGCAGTTGTTGGCCGCTGGCGAG
CAACTCAACGCGGAGCAGCTGGCTGGCGTCATTGCGAAACTGCAGCAGAA
GCTCGAGCAGAAGGAGGATGTGGAGCGACGAGTGGAAAACGACCTCTTGT
TGGACTTTCTTCGACATGTGCGCACCGTCAAACAGGGCATGATTAACAGG
TTGCAGCGCGAGGTTTCTCTTCTAGATGATGATGTGAATGCCGCCGAGTT
GCATCGTGCCCGCTTCGGCACCCCGGAAACCTCGTCAGCCACCAGCTGCG
CGTCTGAACAGCGTCGTGAGGGCGTTGCATTGGAGAACAACTCGCCGTCA
ACCGATGTCATTTCGAGGGACCCGCGCTTTACGAAGAAGAGAAAACGACT
GTCCAGGAATTATGACGTGCTACAGAGTCATTACTTTTCGACCGTGGCCT
CTCAAAAGGGCGAGAAGCGAGCGAGGGCACTGAAGTCCTTCAAGGATGAC
ATATCTAAACTTACGCAATTTACCCGTTTTCGCGATACTGCCACTCTGAT
GCACGTGGCTCGCGTTCCAGATGCACCGTGTCGAGATGTTTTCAAGGTGT
CTAACATTGTTTCCTCCATCGAATTTGATCGTGAATCCGAGTTGCTAGCC
ACTGCTGGAGTCACTAAGCGCATCAAGATATTTGAGTTCTCGAACGTTAC
GCGAAACCTGTCAGATACTCACTATCCCATCCGAGAGATCAAGACCAACG
CGAAGCTTAGTTGGATTTGCTGGAATCCGTACATCAGACACCTGTTAGTG
TCGTCGGACTACGAGGGCGTCGTTGCTCTTTGGGACGTTAGTCAAGCAAA
GGCGCTGCGCGTTTACGAAGAACATGAGCGACGCGTTTGGAGCGTCGATT
ATTGTCCGTCCAAACCCACCGTGTTTGCGTCGGGCTCTGATGACTGTCGT
GTCAAGCTGTGGTGCACCTCGCAAAGGTCCAGCGTTCTTACCATTGACAA
CTCACCGGCAAATGTATGCTCTGTCAAGTTTCACCCCACGGCTCCAGAGA
AAATCGCGTTTGGAAGCGTCGACTTTGGAATTCATTACTATGATCTTCGC
ATGTTCAAGCAGCCTCTTCACGTGTTCAAGTCGCATACTCGCGCCGTCAG
TTACGTCAAATTCATGTCGCCATCGTCATTGGTGTCTGCTTCGGTGGACT
CTACTGTTAAACTGTGGGATCTTAACACCATGACGCTGGAACGAAATTTC
ACAGGGCATACGAACGACAGAAACTTTGTCGGGCTCAGTGTCACTCCGGA
TTATATCGCGTGCGGCTCTGAAGAGGATATGGTGTATTGTTACTACAAGG
CAATTCCGAGACCTTTTACCGGCTACCGGTTTTCGAGTGTAGACCCATTG
ACTGGGAAGGAGATTCAGGATGACGATGATGAGTCGCAATTTGTGAGCAG
TGTGTGCTGGTGTCCAAAGGACCCGACGAAACTTGTTGCTGCCAACAGTT
TGGGCACAATCAAGGTTTTGTCGCTTGAGGCTGACGACAAAGATGATGAT
GATGATGATGGCAATGGTGAAGAACGGAAGGGTGACTGA