Gcaud3422.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3422.t1
Unique Name	Gcaud3422.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	390

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_17_length_79749_cov_4.367006	contig	NODE_17_length_79749_cov_4.367006:23179..24348 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707012.1
Preferred name	SLC35E3
PFAMs	TPT
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06643,ko:K15283,ko:K15285
KEGG TC	2.A.7.9
KEGG Pathway	ko01522,ko01524,ko04068,ko04110,ko04115,ko04120,ko04144,ko04151,ko04218,ko04919,ko05165,ko05169,ko05200,ko05202,ko05203,ko05205,ko05206,ko05214,ko05215,ko05218,ko05219,ko05220,map01522,map01524,map04068,map04110,map04115,map04120,map04144,map04151,map04218,map04919,map05165,map05169,map05200,map05202,map05203,map05205,map05206,map05214,map05215,map05218,map05219,map05220
Evalue	6.98e-129
EggNOG OGs	KOG1441@1\|root,KOG1441@2759\|Eukaryota
EC	2.3.2.27
Description	carbohydrate transport
COG category	Z
BRITE	ko00000,ko00001,ko01000,ko02000,ko04121,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3422	Gcaud3422	Gracilaria caudata M_176_S67 male	gene	NODE_17_length_79749_cov_4.367006 23179..24348 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3422.t1.start1	Gcaud3422.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_17_length_79749_cov_4.367006 23179..23181 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3422.t1.CDS1	Gcaud3422.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_17_length_79749_cov_4.367006 23179..24348 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3422.t1.exon1	Gcaud3422.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_17_length_79749_cov_4.367006 23179..24348 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3422.t1.stop1	Gcaud3422.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_17_length_79749_cov_4.367006 24346..24348 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3422.t1	Gcaud3422.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_17_length_79749_cov_4.367006 23179..24348 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_17_length_79749_cov_4.367006:23179..24348+
coding sequence from alignment at NODE_17_length_79749_cov_4.367006:23179..24348+

mRNA sequence

>Gcaud3422.t1 ID=Gcaud3422.t1|Name=Gcaud3422.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=390bp
MSAFVLHAPVVRAAQSASARCCIGRTRFVPRVNALCASRAVARRARVWRV
CASASGASEVSKPVPQSSAPPLEKRTSRLRVGVYILLWYAFNIVYNISNK
RVLNWFPVPWFVSWVQLLVGALYVLPIWMLRIRKAPVVPRDALNTLLPIS
VGHIIGHVSTVVSLGAVAVSFTHVVKSMEPFVNVVGSAVFLNSIFPFPVY
LSLLPVVAGVVMASVTEVSFTWLGFLSAMTSNFAFTARNIFSKLSMNKPK
GQNMGPANLFAVLSIMSTIILAPFALVIDHPAKLISAWKTATVGATAVVT
APKLLLYLFISGLFFYLYQEVAFKALDSVHPITHAVANTVKRVVIIVTSV
FVFQNPITKANALGSTVALIGVLLYSITKNYFPEKKRSA*

spliced messenger RNA

>Gcaud3422.t1 ID=Gcaud3422.t1|Name=Gcaud3422.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1170bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:23179..24348+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCCTTCGTTCTTCAcgcgcccgtcgtgcgcgcggcgcagtctgc
gtctgcgcgctgttgcatcggtcgcacccgctttgtgccgcgcgtgaacg
cgctgtgtgcgtcgcgcgccgtcgcgcggcgcgcgcgcgtgtggcgcgTC
TGTGCTAGCGCCTCGGGCGCTTCGGAGGTGTCCAAGCCTGTGCCGCAGAG
CTCGGCGCCCCCGTTGGAGAAGAGGACCAGTCGTCTGCGTGTGGGCGTGT
ACATTTTGTTGTGGTATGCATTCAACATTGTGTACAACATCTCCAACAAG
AGGGTGCTCAATTGGTTCCCCGTGCCCTGGTTCGTGTCCTGGGTGCAGCT
TCTGGTCGGCGCTTTGTACGTGCTTCCGATCTGGATGCTGCGCATCAGAA
AGGCCCCCGTCGTGCCGAGGGACGCCCTCAACACCCTGTTGCCCATCTCC
GTTGGCCATATCATCGGTCATGTGTCCACCGTCGTGTCGTTGGGCGCCGT
CGCTGTCTCCTTCACCCACGTCGTCAAGAGCATGGAACCGTTTGTCAACG
TCGTTGGTTCCGCTGTTTTCCTTAACTCCATCTTCCCCTTTCCTGTGTAT
CTCTCGCTGTTGCCAGTCGTGGCCGGTGTCGTCATGGCCTCCGTCACCGA
GGTGTCCTTCACCTGGCTTGGATTTCTCTCCGCCATGACTTCCAACTTCG
CCTTCACCGCCCGTAATATTTTTTCAAAGCTCTCCATGAACAAGCCCAAG
GGCCAAAACATGGGTCCCGCTAACTTATTCGCTGTGCTGTCCATCATGTC
CACCATCATCCTCGCTCCGTTTGCGCTTGTCATTGACCATCCCGCCAAGC
TCATCTCCGCCTGGAAGACCGCCACCGTGGGCGCCACAGCCGTAGTTACA
GCTCCCAAGTTGTTACTTTACTTGTTCATTTCTGGCTTGTTCTTCTATCT
CTACCAAGAAGTTGCGTTCAAGGCATTGGACTCTGTGCATCCAATCACTC
ACGCCGTTGCAAACACCGTCAAGAGGGTGGTCATCATCGTCACCTCCGTC
TTTGTCTTCCAAAATCCTATCACAAAAGCAAACGCTCTCGGCTCTACCGT
AGCACTTATCGGCGTTCTTTTGTACTCCATTACGAAGAACTACTTCCCTG
AGAAGAAAAGAAGCGCTTGA

protein sequence of Gcaud3422.t1

>Gcaud3422.t1 ID=Gcaud3422.t1|Name=Gcaud3422.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=390bp
MSAFVLHAPVVRAAQSASARCCIGRTRFVPRVNALCASRAVARRARVWRV
CASASGASEVSKPVPQSSAPPLEKRTSRLRVGVYILLWYAFNIVYNISNK
RVLNWFPVPWFVSWVQLLVGALYVLPIWMLRIRKAPVVPRDALNTLLPIS
VGHIIGHVSTVVSLGAVAVSFTHVVKSMEPFVNVVGSAVFLNSIFPFPVY
LSLLPVVAGVVMASVTEVSFTWLGFLSAMTSNFAFTARNIFSKLSMNKPK
GQNMGPANLFAVLSIMSTIILAPFALVIDHPAKLISAWKTATVGATAVVT
APKLLLYLFISGLFFYLYQEVAFKALDSVHPITHAVANTVKRVVIIVTSV
FVFQNPITKANALGSTVALIGVLLYSITKNYFPEKKRSA*

mRNA from alignment at NODE_17_length_79749_cov_4.367006:23179..24348+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3422.t1 ID=Gcaud3422.t1|Name=Gcaud3422.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1170bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:23179..24348+ (Gracilaria caudata M_176_S67 male)
ATGTCCGCCTTCGTTCTTCAcgcgcccgtcgtgcgcgcggcgcagtctgc
gtctgcgcgctgttgcatcggtcgcacccgctttgtgccgcgcgtgaacg
cgctgtgtgcgtcgcgcgccgtcgcgcggcgcgcgcgcgtgtggcgcgTC
TGTGCTAGCGCCTCGGGCGCTTCGGAGGTGTCCAAGCCTGTGCCGCAGAG
CTCGGCGCCCCCGTTGGAGAAGAGGACCAGTCGTCTGCGTGTGGGCGTGT
ACATTTTGTTGTGGTATGCATTCAACATTGTGTACAACATCTCCAACAAG
AGGGTGCTCAATTGGTTCCCCGTGCCCTGGTTCGTGTCCTGGGTGCAGCT
TCTGGTCGGCGCTTTGTACGTGCTTCCGATCTGGATGCTGCGCATCAGAA
AGGCCCCCGTCGTGCCGAGGGACGCCCTCAACACCCTGTTGCCCATCTCC
GTTGGCCATATCATCGGTCATGTGTCCACCGTCGTGTCGTTGGGCGCCGT
CGCTGTCTCCTTCACCCACGTCGTCAAGAGCATGGAACCGTTTGTCAACG
TCGTTGGTTCCGCTGTTTTCCTTAACTCCATCTTCCCCTTTCCTGTGTAT
CTCTCGCTGTTGCCAGTCGTGGCCGGTGTCGTCATGGCCTCCGTCACCGA
GGTGTCCTTCACCTGGCTTGGATTTCTCTCCGCCATGACTTCCAACTTCG
CCTTCACCGCCCGTAATATTTTTTCAAAGCTCTCCATGAACAAGCCCAAG
GGCCAAAACATGGGTCCCGCTAACTTATTCGCTGTGCTGTCCATCATGTC
CACCATCATCCTCGCTCCGTTTGCGCTTGTCATTGACCATCCCGCCAAGC
TCATCTCCGCCTGGAAGACCGCCACCGTGGGCGCCACAGCCGTAGTTACA
GCTCCCAAGTTGTTACTTTACTTGTTCATTTCTGGCTTGTTCTTCTATCT
CTACCAAGAAGTTGCGTTCAAGGCATTGGACTCTGTGCATCCAATCACTC
ACGCCGTTGCAAACACCGTCAAGAGGGTGGTCATCATCGTCACCTCCGTC
TTTGTCTTCCAAAATCCTATCACAAAAGCAAACGCTCTCGGCTCTACCGT
AGCACTTATCGGCGTTCTTTTGTACTCCATTACGAAGAACTACTTCCCTG
AGAAGAAAAGAAGCGCTTGA

Coding sequence (CDS) from alignment at NODE_17_length_79749_cov_4.367006:23179..24348+

>Gcaud3422.t1 ID=Gcaud3422.t1|Name=Gcaud3422.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1170bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:23179..24348+ (Gracilaria caudata M_176_S67 male)
ATGTCCGCCTTCGTTCTTCAcgcgcccgtcgtgcgcgcggcgcagtctgc
gtctgcgcgctgttgcatcggtcgcacccgctttgtgccgcgcgtgaacg
cgctgtgtgcgtcgcgcgccgtcgcgcggcgcgcgcgcgtgtggcgcgTC
TGTGCTAGCGCCTCGGGCGCTTCGGAGGTGTCCAAGCCTGTGCCGCAGAG
CTCGGCGCCCCCGTTGGAGAAGAGGACCAGTCGTCTGCGTGTGGGCGTGT
ACATTTTGTTGTGGTATGCATTCAACATTGTGTACAACATCTCCAACAAG
AGGGTGCTCAATTGGTTCCCCGTGCCCTGGTTCGTGTCCTGGGTGCAGCT
TCTGGTCGGCGCTTTGTACGTGCTTCCGATCTGGATGCTGCGCATCAGAA
AGGCCCCCGTCGTGCCGAGGGACGCCCTCAACACCCTGTTGCCCATCTCC
GTTGGCCATATCATCGGTCATGTGTCCACCGTCGTGTCGTTGGGCGCCGT
CGCTGTCTCCTTCACCCACGTCGTCAAGAGCATGGAACCGTTTGTCAACG
TCGTTGGTTCCGCTGTTTTCCTTAACTCCATCTTCCCCTTTCCTGTGTAT
CTCTCGCTGTTGCCAGTCGTGGCCGGTGTCGTCATGGCCTCCGTCACCGA
GGTGTCCTTCACCTGGCTTGGATTTCTCTCCGCCATGACTTCCAACTTCG
CCTTCACCGCCCGTAATATTTTTTCAAAGCTCTCCATGAACAAGCCCAAG
GGCCAAAACATGGGTCCCGCTAACTTATTCGCTGTGCTGTCCATCATGTC
CACCATCATCCTCGCTCCGTTTGCGCTTGTCATTGACCATCCCGCCAAGC
TCATCTCCGCCTGGAAGACCGCCACCGTGGGCGCCACAGCCGTAGTTACA
GCTCCCAAGTTGTTACTTTACTTGTTCATTTCTGGCTTGTTCTTCTATCT
CTACCAAGAAGTTGCGTTCAAGGCATTGGACTCTGTGCATCCAATCACTC
ACGCCGTTGCAAACACCGTCAAGAGGGTGGTCATCATCGTCACCTCCGTC
TTTGTCTTCCAAAATCCTATCACAAAAGCAAACGCTCTCGGCTCTACCGT
AGCACTTATCGGCGTTCTTTTGTACTCCATTACGAAGAACTACTTCCCTG
AGAAGAAAAGAAGCGCTTGA