Gcaud3421.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3421.t1
Unique Name	Gcaud3421.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	665

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_17_length_79749_cov_4.367006	contig	NODE_17_length_79749_cov_4.367006:19894..21888 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704496.1
PFAMs	FBPase,Pyrophosphatase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00017
KEGG ko	ko:K01507,ko:K03841
KEGG Reaction	R00762,R04780
KEGG Pathway	ko00010,ko00030,ko00051,ko00190,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00190,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910
KEGG Module	M00003,M00165,M00167,M00344
GOs	GO:0003674,GO:0003824,GO:0004427,GO:0016462,GO:0016787,GO:0016817,GO:0016818
Evalue	1.43e-272
EggNOG OGs	COG0158@1\|root,COG0221@1\|root,KOG1458@2759\|Eukaryota,KOG1626@2759\|Eukaryota
EC	3.1.3.11,3.6.1.1
Description	inorganic diphosphatase activity
COG category	C
BRITE	ko00000,ko00001,ko00002,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3421	Gcaud3421	Gracilaria caudata M_176_S67 male	gene	NODE_17_length_79749_cov_4.367006 19894..21888 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3421.t1.stop1	Gcaud3421.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_17_length_79749_cov_4.367006 19894..19896 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3421.t1.CDS1	Gcaud3421.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_17_length_79749_cov_4.367006 19894..21888 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3421.t1.exon1	Gcaud3421.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_17_length_79749_cov_4.367006 19894..21888 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3421.t1.start1	Gcaud3421.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_17_length_79749_cov_4.367006 21886..21888 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3421.t1	Gcaud3421.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_17_length_79749_cov_4.367006 19894..21888 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_17_length_79749_cov_4.367006:19894..21888-
coding sequence from alignment at NODE_17_length_79749_cov_4.367006:19894..21888-

mRNA sequence

>Gcaud3421.t1 ID=Gcaud3421.t1|Name=Gcaud3421.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=665bp
MTHAADVEPRPEVNDVDVDVAVAATDDQYSLVRVEDRSAAHNADFKFFFR
KEHHGVINPLHDIPLYADKDAGVLNFICEIPRWTNAKLELHTKSVLAPVV
QDTKKGKKRFVHNVYPYKGYIWNYGCFPQTWEDPTQVHMETGALGDGDPL
DVCEIGGKACRIGEVMQVKVLGVLGMIDEGEMDWKIIVINVNDPIADDLH
DVDDLYRVFPGLLHATFSWFRTYKVPDGKALNLFAFREQVQSAHYAKEVI
EECHQSWNKLITGVLSHKNINCVNTTLKDSAHYSPPEKARQVVDDAIKEM
EAKSNDAPENSLGRSNSWLDMTVIPPPHFDEAPTGVAGVKPMMTIKRFST
ELQRKFPHGSNDLSLLITELGVAFKCVRAQLCDAPNANFSALASFANSQI
HASLASSGLCCLIFSSISNQPMALESGTDVGNYIVVYNPLCGVPGASLGS
IFSVYYRKSAPGKEGDTADLLQRPGFEQVAAGYCMYGSSTYLTYSMGYGV
HIFTLDSVSGHFVLSKQHVHTPATGPLYSVDTSVLPNVVDGVAKFMAELE
SEGSGKKFRHLNNLVANFHNVLTKGGILMLPGPQKKDLAKFLSEAAPLAF
VARQAGGRASVGKRTLLELSAWSLEMSVPLFVGSAKDVDRLEELVLGHSI
EEKNKVDPSKNLRI*

spliced messenger RNA

>Gcaud3421.t1 ID=Gcaud3421.t1|Name=Gcaud3421.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1995bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:19894..21888- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCACGCTGCCGATGTGGAGCCACGTCCGGAGGTGAACGACGTCGA
CGTCGACGTCGCCGTCGCCGCTACCGACGATCAGTACAGTCTGGTGCGCG
TGGAGGACCGTTCTGCTGCGCATAACGCCGATTTCAAGTTCTTCTTCCGC
AAGGAACACCACGGCGTCATCAACCCTTTGCATGACATCCCTCTGTACGC
GGACAAGGACGCTGGCGTGCTAAACTTCATCTGCGAGATTCCGAGGTGGA
CCAATGCCAAACTTGAGTTGCACACCAAGAGTGTGTTGGCGCCTGTCGTG
CAGGACACCAAGAAGGGCAAGAAGCGATTTGTACATAACGTGTACCCATA
CAAGGGCTACATCTGGAACTATGGCTGCTTCCCGCAGACCTGGGAGGATC
CCACCCAGGTGCACATGGAGACCGGCGCGCTGGGAGACGGCGATCCTTTG
GATGTGTGTGAGATTGGCGGCAAGGCCTGCCGTATTGGCGAGGTCATGCA
AGTCAAGGTACTGGGCGTGCTTGGCATGATTGATGAGGGTGAGATGGACT
GGAAGATCATTGTCATCAACGTCAATGACCCCATCGCTGATGACCTGCAC
GACGTTGACGATCTGTACCGTGTCTTCCCCGGTCTGTTGCACGCTACCTT
TTCGTGGTTCAGGACCTATAAGGTGCCTGACGGAAAGGCGCTCAATTTGT
TTGCCTTCCGTGAACAGGTGCAGAGCGCCCACTACGCGAAGGAGGTCATC
GAGGAGTGTCATCAGAGCTGGAACAAGCTTATTACCGGCGTTTTGTCCCA
TAAGAACATCAACTGTGTCAATACCACCCTCAAGGACTCGGCCCACTACT
CACCGCCGGAGAAGGCACGTCAGGTTGTTGATGACGCCATCAAGGAAATG
GAAGCAAAGTCCAATGACGCCCCGGAGAACTCACTTGGACGCTCCAATTC
GTGGCTAGATATGACTGTCATCCCGCCGCCTCACTTCGATGAAGCTCCTA
CCGGTGTGGCGGGCGTCAAGCCCATGATGACCATCAAGAGGTTCAGTACT
GAGTTGCAGCGCAAGTTCCCGCATGGCTCCAACGACCTTAGCCTGCTCAT
CACCGAACTCGGCGTCGCCTTCAAGTGCGTCAGGGCGCAGCTGTGTGATG
CGCCCAACGCCAACTTTTCGGCGTTGGCGTCGTTTGCAAACTCTCAGATC
CATGCCTCGCTCGCTTCGTCGGGTCTTTGCTGCTTGATCTTCAGTTCGAT
CTCGAATCAGCCCATGGCGTTGGAATCGGGCACCGATGTTGGCAACTACA
TTGTGGTGTACAATCCGTTGTGCGGTGTACCTGGCGCCTCGCTTGGTTCG
ATTTTCTCTGTATATTACCGAAAGTCGGCGCCGGGTAAGGAGGGTGACAC
GGCCGATCTGTTGCAACGGCCTGGCTTTGAGCAGGTTGCCGCGGGCTACT
GTATGTATGGATCTTCTACCTATCTTACGTACAGCATGGGATACGGCGTG
CATATATTCACGTTGGATTCAGTGTCTGGTCACTTTGTGCTTTCGAAGCA
GCATGTGCATACACCGGCTACTGGTCCCCTTTACTCGGTTGACACGTCGG
TGTTGCCCAACGTTGTGGACGGCGTTGCCAAGTTCATGGCCGAGCTGGAG
AGTGAGGGAAGCGGTAAGAAGTTCAGACATTTGAACAACCTGGTTGCCAA
CTTCCACAACGTGCTCACGAAGGGCGGCATTCTGATGTTGCCTGGTCCGC
AGAAGAAGGATCTGGCAAAGTTCTTGTCGGAGGCGGCGCCGCTGGCGTTC
GTGGCCAGGCAGGCCGGCGGCAGAGCGAGCGTTGGAAAGAGAACGCTTCT
GGAGCTGTCGGCGTGGAGCCTTGAAATGAGCGTGCCGTTGTTCGTTGGAT
CGGCGAAGGACGTGGACCGTTTGGAAGAGCTTGTTTTGGGACATAGTATT
GAAGAGAAGAACAAGGTGGATCCGAGTAAGAACCTTAGGATTTAG

protein sequence of Gcaud3421.t1

>Gcaud3421.t1 ID=Gcaud3421.t1|Name=Gcaud3421.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=665bp
MTHAADVEPRPEVNDVDVDVAVAATDDQYSLVRVEDRSAAHNADFKFFFR
KEHHGVINPLHDIPLYADKDAGVLNFICEIPRWTNAKLELHTKSVLAPVV
QDTKKGKKRFVHNVYPYKGYIWNYGCFPQTWEDPTQVHMETGALGDGDPL
DVCEIGGKACRIGEVMQVKVLGVLGMIDEGEMDWKIIVINVNDPIADDLH
DVDDLYRVFPGLLHATFSWFRTYKVPDGKALNLFAFREQVQSAHYAKEVI
EECHQSWNKLITGVLSHKNINCVNTTLKDSAHYSPPEKARQVVDDAIKEM
EAKSNDAPENSLGRSNSWLDMTVIPPPHFDEAPTGVAGVKPMMTIKRFST
ELQRKFPHGSNDLSLLITELGVAFKCVRAQLCDAPNANFSALASFANSQI
HASLASSGLCCLIFSSISNQPMALESGTDVGNYIVVYNPLCGVPGASLGS
IFSVYYRKSAPGKEGDTADLLQRPGFEQVAAGYCMYGSSTYLTYSMGYGV
HIFTLDSVSGHFVLSKQHVHTPATGPLYSVDTSVLPNVVDGVAKFMAELE
SEGSGKKFRHLNNLVANFHNVLTKGGILMLPGPQKKDLAKFLSEAAPLAF
VARQAGGRASVGKRTLLELSAWSLEMSVPLFVGSAKDVDRLEELVLGHSI
EEKNKVDPSKNLRI*

mRNA from alignment at NODE_17_length_79749_cov_4.367006:19894..21888-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3421.t1 ID=Gcaud3421.t1|Name=Gcaud3421.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1995bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:19894..21888- (Gracilaria caudata M_176_S67 male)
ATGACGCACGCTGCCGATGTGGAGCCACGTCCGGAGGTGAACGACGTCGA
CGTCGACGTCGCCGTCGCCGCTACCGACGATCAGTACAGTCTGGTGCGCG
TGGAGGACCGTTCTGCTGCGCATAACGCCGATTTCAAGTTCTTCTTCCGC
AAGGAACACCACGGCGTCATCAACCCTTTGCATGACATCCCTCTGTACGC
GGACAAGGACGCTGGCGTGCTAAACTTCATCTGCGAGATTCCGAGGTGGA
CCAATGCCAAACTTGAGTTGCACACCAAGAGTGTGTTGGCGCCTGTCGTG
CAGGACACCAAGAAGGGCAAGAAGCGATTTGTACATAACGTGTACCCATA
CAAGGGCTACATCTGGAACTATGGCTGCTTCCCGCAGACCTGGGAGGATC
CCACCCAGGTGCACATGGAGACCGGCGCGCTGGGAGACGGCGATCCTTTG
GATGTGTGTGAGATTGGCGGCAAGGCCTGCCGTATTGGCGAGGTCATGCA
AGTCAAGGTACTGGGCGTGCTTGGCATGATTGATGAGGGTGAGATGGACT
GGAAGATCATTGTCATCAACGTCAATGACCCCATCGCTGATGACCTGCAC
GACGTTGACGATCTGTACCGTGTCTTCCCCGGTCTGTTGCACGCTACCTT
TTCGTGGTTCAGGACCTATAAGGTGCCTGACGGAAAGGCGCTCAATTTGT
TTGCCTTCCGTGAACAGGTGCAGAGCGCCCACTACGCGAAGGAGGTCATC
GAGGAGTGTCATCAGAGCTGGAACAAGCTTATTACCGGCGTTTTGTCCCA
TAAGAACATCAACTGTGTCAATACCACCCTCAAGGACTCGGCCCACTACT
CACCGCCGGAGAAGGCACGTCAGGTTGTTGATGACGCCATCAAGGAAATG
GAAGCAAAGTCCAATGACGCCCCGGAGAACTCACTTGGACGCTCCAATTC
GTGGCTAGATATGACTGTCATCCCGCCGCCTCACTTCGATGAAGCTCCTA
CCGGTGTGGCGGGCGTCAAGCCCATGATGACCATCAAGAGGTTCAGTACT
GAGTTGCAGCGCAAGTTCCCGCATGGCTCCAACGACCTTAGCCTGCTCAT
CACCGAACTCGGCGTCGCCTTCAAGTGCGTCAGGGCGCAGCTGTGTGATG
CGCCCAACGCCAACTTTTCGGCGTTGGCGTCGTTTGCAAACTCTCAGATC
CATGCCTCGCTCGCTTCGTCGGGTCTTTGCTGCTTGATCTTCAGTTCGAT
CTCGAATCAGCCCATGGCGTTGGAATCGGGCACCGATGTTGGCAACTACA
TTGTGGTGTACAATCCGTTGTGCGGTGTACCTGGCGCCTCGCTTGGTTCG
ATTTTCTCTGTATATTACCGAAAGTCGGCGCCGGGTAAGGAGGGTGACAC
GGCCGATCTGTTGCAACGGCCTGGCTTTGAGCAGGTTGCCGCGGGCTACT
GTATGTATGGATCTTCTACCTATCTTACGTACAGCATGGGATACGGCGTG
CATATATTCACGTTGGATTCAGTGTCTGGTCACTTTGTGCTTTCGAAGCA
GCATGTGCATACACCGGCTACTGGTCCCCTTTACTCGGTTGACACGTCGG
TGTTGCCCAACGTTGTGGACGGCGTTGCCAAGTTCATGGCCGAGCTGGAG
AGTGAGGGAAGCGGTAAGAAGTTCAGACATTTGAACAACCTGGTTGCCAA
CTTCCACAACGTGCTCACGAAGGGCGGCATTCTGATGTTGCCTGGTCCGC
AGAAGAAGGATCTGGCAAAGTTCTTGTCGGAGGCGGCGCCGCTGGCGTTC
GTGGCCAGGCAGGCCGGCGGCAGAGCGAGCGTTGGAAAGAGAACGCTTCT
GGAGCTGTCGGCGTGGAGCCTTGAAATGAGCGTGCCGTTGTTCGTTGGAT
CGGCGAAGGACGTGGACCGTTTGGAAGAGCTTGTTTTGGGACATAGTATT
GAAGAGAAGAACAAGGTGGATCCGAGTAAGAACCTTAGGATTTAG

Coding sequence (CDS) from alignment at NODE_17_length_79749_cov_4.367006:19894..21888-

>Gcaud3421.t1 ID=Gcaud3421.t1|Name=Gcaud3421.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1995bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:19894..21888- (Gracilaria caudata M_176_S67 male)
ATGACGCACGCTGCCGATGTGGAGCCACGTCCGGAGGTGAACGACGTCGA
CGTCGACGTCGCCGTCGCCGCTACCGACGATCAGTACAGTCTGGTGCGCG
TGGAGGACCGTTCTGCTGCGCATAACGCCGATTTCAAGTTCTTCTTCCGC
AAGGAACACCACGGCGTCATCAACCCTTTGCATGACATCCCTCTGTACGC
GGACAAGGACGCTGGCGTGCTAAACTTCATCTGCGAGATTCCGAGGTGGA
CCAATGCCAAACTTGAGTTGCACACCAAGAGTGTGTTGGCGCCTGTCGTG
CAGGACACCAAGAAGGGCAAGAAGCGATTTGTACATAACGTGTACCCATA
CAAGGGCTACATCTGGAACTATGGCTGCTTCCCGCAGACCTGGGAGGATC
CCACCCAGGTGCACATGGAGACCGGCGCGCTGGGAGACGGCGATCCTTTG
GATGTGTGTGAGATTGGCGGCAAGGCCTGCCGTATTGGCGAGGTCATGCA
AGTCAAGGTACTGGGCGTGCTTGGCATGATTGATGAGGGTGAGATGGACT
GGAAGATCATTGTCATCAACGTCAATGACCCCATCGCTGATGACCTGCAC
GACGTTGACGATCTGTACCGTGTCTTCCCCGGTCTGTTGCACGCTACCTT
TTCGTGGTTCAGGACCTATAAGGTGCCTGACGGAAAGGCGCTCAATTTGT
TTGCCTTCCGTGAACAGGTGCAGAGCGCCCACTACGCGAAGGAGGTCATC
GAGGAGTGTCATCAGAGCTGGAACAAGCTTATTACCGGCGTTTTGTCCCA
TAAGAACATCAACTGTGTCAATACCACCCTCAAGGACTCGGCCCACTACT
CACCGCCGGAGAAGGCACGTCAGGTTGTTGATGACGCCATCAAGGAAATG
GAAGCAAAGTCCAATGACGCCCCGGAGAACTCACTTGGACGCTCCAATTC
GTGGCTAGATATGACTGTCATCCCGCCGCCTCACTTCGATGAAGCTCCTA
CCGGTGTGGCGGGCGTCAAGCCCATGATGACCATCAAGAGGTTCAGTACT
GAGTTGCAGCGCAAGTTCCCGCATGGCTCCAACGACCTTAGCCTGCTCAT
CACCGAACTCGGCGTCGCCTTCAAGTGCGTCAGGGCGCAGCTGTGTGATG
CGCCCAACGCCAACTTTTCGGCGTTGGCGTCGTTTGCAAACTCTCAGATC
CATGCCTCGCTCGCTTCGTCGGGTCTTTGCTGCTTGATCTTCAGTTCGAT
CTCGAATCAGCCCATGGCGTTGGAATCGGGCACCGATGTTGGCAACTACA
TTGTGGTGTACAATCCGTTGTGCGGTGTACCTGGCGCCTCGCTTGGTTCG
ATTTTCTCTGTATATTACCGAAAGTCGGCGCCGGGTAAGGAGGGTGACAC
GGCCGATCTGTTGCAACGGCCTGGCTTTGAGCAGGTTGCCGCGGGCTACT
GTATGTATGGATCTTCTACCTATCTTACGTACAGCATGGGATACGGCGTG
CATATATTCACGTTGGATTCAGTGTCTGGTCACTTTGTGCTTTCGAAGCA
GCATGTGCATACACCGGCTACTGGTCCCCTTTACTCGGTTGACACGTCGG
TGTTGCCCAACGTTGTGGACGGCGTTGCCAAGTTCATGGCCGAGCTGGAG
AGTGAGGGAAGCGGTAAGAAGTTCAGACATTTGAACAACCTGGTTGCCAA
CTTCCACAACGTGCTCACGAAGGGCGGCATTCTGATGTTGCCTGGTCCGC
AGAAGAAGGATCTGGCAAAGTTCTTGTCGGAGGCGGCGCCGCTGGCGTTC
GTGGCCAGGCAGGCCGGCGGCAGAGCGAGCGTTGGAAAGAGAACGCTTCT
GGAGCTGTCGGCGTGGAGCCTTGAAATGAGCGTGCCGTTGTTCGTTGGAT
CGGCGAAGGACGTGGACCGTTTGGAAGAGCTTGTTTTGGGACATAGTATT
GAAGAGAAGAACAAGGTGGATCCGAGTAAGAACCTTAGGATTTAG