Gcaud3416.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3416.t1
Unique Name	Gcaud3416.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	509

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_973_length_15615_cov_5.661105	contig	NODE_973_length_15615_cov_5.661105:12357..13964 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	296587.XP_002507476.1
Preferred name	MBB1
PFAMs	TPR_16,TPR_8
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K20310
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Evalue	0.000293
EggNOG OGs	COG0457@1\|root,KOG1124@2759\|Eukaryota,37PIA@33090\|Viridiplantae,34H83@3041\|Chlorophyta
Description	PsbB mRNA maturation factor Mbb1
COG category	S
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3416	Gcaud3416	Gracilaria caudata M_176_S67 male	gene	NODE_973_length_15615_cov_5.661105 12357..13964 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3416.t1	Gcaud3416.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_973_length_15615_cov_5.661105 12357..13964 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3416.t1.stop1	Gcaud3416.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_973_length_15615_cov_5.661105 12357..12359 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3416.t1.CDS1	Gcaud3416.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_973_length_15615_cov_5.661105 12357..12361 -
Gcaud3416.t1.CDS2	Gcaud3416.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_973_length_15615_cov_5.661105 12443..13964 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3416.t1.exon1	Gcaud3416.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_973_length_15615_cov_5.661105 12357..12361 -
Gcaud3416.t1.exon2	Gcaud3416.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_973_length_15615_cov_5.661105 12443..13964 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3416.t1.intron1	Gcaud3416.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_973_length_15615_cov_5.661105 12362..12442 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3416.t1.start1	Gcaud3416.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_973_length_15615_cov_5.661105 13962..13964 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_973_length_15615_cov_5.661105:12357..13964-
coding sequence from alignment at NODE_973_length_15615_cov_5.661105:12357..13964-

mRNA sequence

>Gcaud3416.t1 ID=Gcaud3416.t1|Name=Gcaud3416.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=509bp
MSAFIPPTPPGKLSPRASRLQPLRPATHMTTSVAAPVRAPAPRLHRPLPP
PKRPSPEKSTENHRLFQLQQARALLNERRYEAARAAFRSLADSDCCSELL
RSWGCLEGSNGDEQIARDLFARSVRTASDPATEAAAWNAWALMEQRKGHI
SAARKCFNNGLRIDPSHAPLIQAFAIFEAKYGSKRRARTLFSKGAELNEH
SHRTWIAWANFEAAQDDFSRARFLFKTAVTKANGEDGIAALLAWTKFEER
QKKWERARDLYREGLLRYGRQCAKILHAWGTTESHCRNFERSRQLFLATL
ACPGMSGPQVAPTYQAWALAEKKAGNISSARKLFRRGADANPNHVYIWQA
WGIMEHRCRKVDAAREYFKKGTEVDPLNAPTWNAWARMEAEVGNLEEARR
LFESATKANPRHAISLQAWACLEGRNGNVDTARSLFKRAVTADPTCAPAW
QAWARVEQSVGNFETARSLFQKGIDADPTHIAVWQAWSQMEEKLGEWNSG
PACSLPHH*

spliced messenger RNA

>Gcaud3416.t1 ID=Gcaud3416.t1|Name=Gcaud3416.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1527bp|location=Sequence derived from alignment at NODE_973_length_15615_cov_5.661105:12357..13964- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCGTTTATCCCACCCACTCCCCCTGGAAAGCTCTCCCCTCGCGC
TTCCCGCCTCCAACCACTGCGCCCTGCGACGCACATGACAACCTCCGTCG
CCGCACCAGTTCGAGCCCCCGCGCCGCGTCTCCATCGTCCGTTACCGCCA
CCAAAACGACCCTCCCCCGAAAAAAGTACCGAAAACCACCGTCTCTTCCA
GTTACAGCAGGCACGAGCCCTTTTGAATGAGCGTCGTTACGAAGCTGCTC
GCGCCGCCTTCAGGTCACTCGCAGACTCTGATTGTTGTTCCGAACTGCTT
CGTTCTTGGGGTTGTTTGGAAGGCTCCAATGGCGACGAGCAAATCGCCCG
CGACTTGTTCGCTCGTTCTGTCAGGACGGCGTCAGACCCTGCTACAGAGG
CCGCCGCCTGGAACGCCTGGGCGCTGATGGAACAGAGAAAGGGACATATT
TCGGCTGCCAGGAAGTGTTTTAATAATGGACTGCGAATCGATCCGAGTCA
CGCCCCACTCATTCAGGCCTTTGCTATTTTTGAAGCCAAGTACGGTAGCA
AGCGACGAGCTCGCACATTGTTTTCTAAAGGAGCCGAACTCAACGAGCAT
TCACATCGCACCTGGATTGCATGGGCCAACTTTGAAGCGGCACAGGATGA
TTTCTCACGCGCTAGATTTTTGTTTAAGACCGCTGTAACGAAGGCAAATG
GCGAGGATGGTATTGCGGCTCTACTAGCCTGGACCAAATTCGAAGAGAGA
CAGAAGAAATGGGAGCGAGCAAGAGATCTCTACCGCGAAGGTCTTCTTCG
ATACGGAAGGCAATGTGCTAAGATTCTGCACGCATGGGGTACAACAGAGA
GTCATTGTCGAAATTTTGAACGCTCACGACAGCTGTTTTTGGCCACTTTG
GCGTGTCCTGGCATGTCCGGACCACAAGTGGCGCCAACTTATCAAGCATG
GGCATTAGCTGAGAAGAAGGCTGGTAATATCTCGAGCGCAAGAAAACTTT
TCAGACGGGGTGCAGATGCAAACCCGAATCATGTGTACATCTGGCAAGCT
TGGGGCATTATGGAACACCGCTGTCGCAAGGTAGACGCAGCTAGAGAATA
TTTCAAGAAAGGAACAGAGGTGGATCCGTTAAACGCTCCTACATGGAATG
CTTGGGCGCGAATGGAAGCCGAAGTAGGCAATTTGGAAGAAGCTCGCCGT
TTGTTCGAATCCGCTACCAAGGCAAATCCTCGCCACGCTATTAGTTTGCA
GGCTTGGGCTTGCCTTGAAGGGCGGAACGGGAATGTAGATACTGCACGAT
CCTTGTTCAAGCGGGCGGTCACTGCTGACCCCACGTGTGCGCCTGCGTGG
CAGGCATGGGCCCGTGTTGAACAAAGTGTTGGTAACTTTGAAACCGCACG
TTCTTTGTTCCAGAAGGGTATCGATGCCGACCCGACGCATATTGCTGTAT
GGCAGGCGTGGTCGCAAATGGAGGAGAAGTTGGGCGAGTGGAACAGTGGC
CCAGCGTGTAGTCTTCCACATCACTAA

protein sequence of Gcaud3416.t1

>Gcaud3416.t1 ID=Gcaud3416.t1|Name=Gcaud3416.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=509bp
MSAFIPPTPPGKLSPRASRLQPLRPATHMTTSVAAPVRAPAPRLHRPLPP
PKRPSPEKSTENHRLFQLQQARALLNERRYEAARAAFRSLADSDCCSELL
RSWGCLEGSNGDEQIARDLFARSVRTASDPATEAAAWNAWALMEQRKGHI
SAARKCFNNGLRIDPSHAPLIQAFAIFEAKYGSKRRARTLFSKGAELNEH
SHRTWIAWANFEAAQDDFSRARFLFKTAVTKANGEDGIAALLAWTKFEER
QKKWERARDLYREGLLRYGRQCAKILHAWGTTESHCRNFERSRQLFLATL
ACPGMSGPQVAPTYQAWALAEKKAGNISSARKLFRRGADANPNHVYIWQA
WGIMEHRCRKVDAAREYFKKGTEVDPLNAPTWNAWARMEAEVGNLEEARR
LFESATKANPRHAISLQAWACLEGRNGNVDTARSLFKRAVTADPTCAPAW
QAWARVEQSVGNFETARSLFQKGIDADPTHIAVWQAWSQMEEKLGEWNSG
PACSLPHH*

mRNA from alignment at NODE_973_length_15615_cov_5.661105:12357..13964-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3416.t1 ID=Gcaud3416.t1|Name=Gcaud3416.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1608bp|location=Sequence derived from alignment at NODE_973_length_15615_cov_5.661105:12357..13964- (Gracilaria caudata M_176_S67 male)
ATGTCGGCGTTTATCCCACCCACTCCCCCTGGAAAGCTCTCCCCTCGCGC
TTCCCGCCTCCAACCACTGCGCCCTGCGACGCACATGACAACCTCCGTCG
CCGCACCAGTTCGAGCCCCCGCGCCGCGTCTCCATCGTCCGTTACCGCCA
CCAAAACGACCCTCCCCCGAAAAAAGTACCGAAAACCACCGTCTCTTCCA
GTTACAGCAGGCACGAGCCCTTTTGAATGAGCGTCGTTACGAAGCTGCTC
GCGCCGCCTTCAGGTCACTCGCAGACTCTGATTGTTGTTCCGAACTGCTT
CGTTCTTGGGGTTGTTTGGAAGGCTCCAATGGCGACGAGCAAATCGCCCG
CGACTTGTTCGCTCGTTCTGTCAGGACGGCGTCAGACCCTGCTACAGAGG
CCGCCGCCTGGAACGCCTGGGCGCTGATGGAACAGAGAAAGGGACATATT
TCGGCTGCCAGGAAGTGTTTTAATAATGGACTGCGAATCGATCCGAGTCA
CGCCCCACTCATTCAGGCCTTTGCTATTTTTGAAGCCAAGTACGGTAGCA
AGCGACGAGCTCGCACATTGTTTTCTAAAGGAGCCGAACTCAACGAGCAT
TCACATCGCACCTGGATTGCATGGGCCAACTTTGAAGCGGCACAGGATGA
TTTCTCACGCGCTAGATTTTTGTTTAAGACCGCTGTAACGAAGGCAAATG
GCGAGGATGGTATTGCGGCTCTACTAGCCTGGACCAAATTCGAAGAGAGA
CAGAAGAAATGGGAGCGAGCAAGAGATCTCTACCGCGAAGGTCTTCTTCG
ATACGGAAGGCAATGTGCTAAGATTCTGCACGCATGGGGTACAACAGAGA
GTCATTGTCGAAATTTTGAACGCTCACGACAGCTGTTTTTGGCCACTTTG
GCGTGTCCTGGCATGTCCGGACCACAAGTGGCGCCAACTTATCAAGCATG
GGCATTAGCTGAGAAGAAGGCTGGTAATATCTCGAGCGCAAGAAAACTTT
TCAGACGGGGTGCAGATGCAAACCCGAATCATGTGTACATCTGGCAAGCT
TGGGGCATTATGGAACACCGCTGTCGCAAGGTAGACGCAGCTAGAGAATA
TTTCAAGAAAGGAACAGAGGTGGATCCGTTAAACGCTCCTACATGGAATG
CTTGGGCGCGAATGGAAGCCGAAGTAGGCAATTTGGAAGAAGCTCGCCGT
TTGTTCGAATCCGCTACCAAGGCAAATCCTCGCCACGCTATTAGTTTGCA
GGCTTGGGCTTGCCTTGAAGGGCGGAACGGGAATGTAGATACTGCACGAT
CCTTGTTCAAGCGGGCGGTCACTGCTGACCCCACGTGTGCGCCTGCGTGG
CAGGCATGGGCCCGTGTTGAACAAAGTGTTGGTAACTTTGAAACCGCACG
TTCTTTGTTCCAGAAGGGTATCGATGCCGACCCGACGCATATTGCTGTAT
GGCAGGCGTGGTCGCAAATGGAGGAGAAGTTGGGCGAGTGGAACAGTGGC
CCAGCGTGTAGTCTTCCACATCGTGGTTCGGATTAACAGATGCGTTCCAT
CCAGGTGTCTTGAGGTCTTGAGGTAACCCTCTTCAATATTCTTTCGTGTA
CAGACTAA

Coding sequence (CDS) from alignment at NODE_973_length_15615_cov_5.661105:12357..13964-

>Gcaud3416.t1 ID=Gcaud3416.t1|Name=Gcaud3416.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1527bp|location=Sequence derived from alignment at NODE_973_length_15615_cov_5.661105:12357..13964- (Gracilaria caudata M_176_S67 male)
ATGTCGGCGTTTATCCCACCCACTCCCCCTGGAAAGCTCTCCCCTCGCGC
TTCCCGCCTCCAACCACTGCGCCCTGCGACGCACATGACAACCTCCGTCG
CCGCACCAGTTCGAGCCCCCGCGCCGCGTCTCCATCGTCCGTTACCGCCA
CCAAAACGACCCTCCCCCGAAAAAAGTACCGAAAACCACCGTCTCTTCCA
GTTACAGCAGGCACGAGCCCTTTTGAATGAGCGTCGTTACGAAGCTGCTC
GCGCCGCCTTCAGGTCACTCGCAGACTCTGATTGTTGTTCCGAACTGCTT
CGTTCTTGGGGTTGTTTGGAAGGCTCCAATGGCGACGAGCAAATCGCCCG
CGACTTGTTCGCTCGTTCTGTCAGGACGGCGTCAGACCCTGCTACAGAGG
CCGCCGCCTGGAACGCCTGGGCGCTGATGGAACAGAGAAAGGGACATATT
TCGGCTGCCAGGAAGTGTTTTAATAATGGACTGCGAATCGATCCGAGTCA
CGCCCCACTCATTCAGGCCTTTGCTATTTTTGAAGCCAAGTACGGTAGCA
AGCGACGAGCTCGCACATTGTTTTCTAAAGGAGCCGAACTCAACGAGCAT
TCACATCGCACCTGGATTGCATGGGCCAACTTTGAAGCGGCACAGGATGA
TTTCTCACGCGCTAGATTTTTGTTTAAGACCGCTGTAACGAAGGCAAATG
GCGAGGATGGTATTGCGGCTCTACTAGCCTGGACCAAATTCGAAGAGAGA
CAGAAGAAATGGGAGCGAGCAAGAGATCTCTACCGCGAAGGTCTTCTTCG
ATACGGAAGGCAATGTGCTAAGATTCTGCACGCATGGGGTACAACAGAGA
GTCATTGTCGAAATTTTGAACGCTCACGACAGCTGTTTTTGGCCACTTTG
GCGTGTCCTGGCATGTCCGGACCACAAGTGGCGCCAACTTATCAAGCATG
GGCATTAGCTGAGAAGAAGGCTGGTAATATCTCGAGCGCAAGAAAACTTT
TCAGACGGGGTGCAGATGCAAACCCGAATCATGTGTACATCTGGCAAGCT
TGGGGCATTATGGAACACCGCTGTCGCAAGGTAGACGCAGCTAGAGAATA
TTTCAAGAAAGGAACAGAGGTGGATCCGTTAAACGCTCCTACATGGAATG
CTTGGGCGCGAATGGAAGCCGAAGTAGGCAATTTGGAAGAAGCTCGCCGT
TTGTTCGAATCCGCTACCAAGGCAAATCCTCGCCACGCTATTAGTTTGCA
GGCTTGGGCTTGCCTTGAAGGGCGGAACGGGAATGTAGATACTGCACGAT
CCTTGTTCAAGCGGGCGGTCACTGCTGACCCCACGTGTGCGCCTGCGTGG
CAGGCATGGGCCCGTGTTGAACAAAGTGTTGGTAACTTTGAAACCGCACG
TTCTTTGTTCCAGAAGGGTATCGATGCCGACCCGACGCATATTGCTGTAT
GGCAGGCGTGGTCGCAAATGGAGGAGAAGTTGGGCGAGTGGAACAGTGGC
CCAGCGTGTAGTCTTCCACATCACTAA