Gcaud3414.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3414.t1
Unique Name	Gcaud3414.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	576

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_973_length_15615_cov_5.661105	contig	NODE_973_length_15615_cov_5.661105:8049..9776 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707151.1
Preferred name	PFP-BETA
PFAMs	PFK
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00017
KEGG ko	ko:K00895
KEGG Reaction	R00764,R02073
KEGG Pathway	ko00010,ko00030,ko00051,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00051,map01100,map01110,map01120,map01130
GOs	GO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006793,GO:0006796,GO:0007275,GO:0008150,GO:0008152,GO:0008443,GO:0009719,GO:0009725,GO:0009735,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010154,GO:0015979,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019200,GO:0022414,GO:0030312,GO:0032501,GO:0032502,GO:0042221,GO:0044237,GO:0044238,GO:0044262,GO:0044424,GO:0044444,GO:0044464,GO:0046686,GO:0046835,GO:0047334,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0061458,GO:0071704,GO:0071944
Evalue	1.98e-204
EggNOG OGs	COG0205@1\|root,KOG2440@2759\|Eukaryota
EC	2.7.1.90
Description	6-phosphofructokinase activity
COG category	G
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3414	Gcaud3414	Gracilaria caudata M_176_S67 male	gene	NODE_973_length_15615_cov_5.661105 8049..9776 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3414.t1.stop1	Gcaud3414.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_973_length_15615_cov_5.661105 8049..8051 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3414.t1.CDS1	Gcaud3414.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_973_length_15615_cov_5.661105 8049..9776 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3414.t1.exon1	Gcaud3414.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_973_length_15615_cov_5.661105 8049..9776 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3414.t1.start1	Gcaud3414.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_973_length_15615_cov_5.661105 9774..9776 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3414.t1	Gcaud3414.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_973_length_15615_cov_5.661105 8049..9776 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_973_length_15615_cov_5.661105:8049..9776-
coding sequence from alignment at NODE_973_length_15615_cov_5.661105:8049..9776-

mRNA sequence

>Gcaud3414.t1 ID=Gcaud3414.t1|Name=Gcaud3414.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=576bp
MATKLSAAVDMPSPVLVDVHTSKLLSDLAREHRNLSPLQRARLQYNPRCN
PVLAEPAAVTLVDGAPTTSAFDHELVSQLFPKLYGQPSVSFASQPSAVTT
PKIVGVVLSGGPAPGGHNVICGMFDFITKLHSQSKLLGFRSGPDGLLKAD
YVQLDADMVAPYRNQGGFHMIGSGRTKIETPAQFEAVRNTVQQLQLDALV
IVGGDDSNSNAMKLAEDFSAHGLKCCVNGAPKTIDNDLRNAQIQVSFGFD
TASKSYCESVASLAFDAISARKAYHFVRVMGRSASHIALECALQTHPNLC
FIGEEVKHNAITLTDIVDQIVKLIVERADMGKNYGVIVLPEGLVEFMPDV
EALIYELNEILAHAEKPLTRDEITAALSVTNSSLFAKLPEAIANQLMLER
DPHGNVQVAKIEAERLLIGMASAQLSSLKKRGLYSGKFSGVPHYLGYEGR
CAMPSNFDANYTYGLGRVAAALCCNEKTGYIATLSNLTKAPEEWVPAGFP
LTMMMNVERRHGKDTAVIKKMLVDLEGAPFIEFVQSRDSWKLGDEYRSPG
TSQYWGPTADVVSMSLQLEAEAATQ*

spliced messenger RNA

>Gcaud3414.t1 ID=Gcaud3414.t1|Name=Gcaud3414.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1728bp|location=Sequence derived from alignment at NODE_973_length_15615_cov_5.661105:8049..9776- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACCAAGCTCTCCGCTGCCGTTGATATGCCTAGTCCTGTCCTTGT
AGACGTGCACACGTCCAAGCTGCTCTCCGATTTGGCGCGCGAGCACCGTA
ACCTGTCCCCGTTGCAGCGTGCTCGCCTACAGTATAATCCTCGCTGCAAC
CCTGTGCTCGCCGAGCCTGCTGCTGTCACCCTTGTGGACGGCGCTCCCAC
CACTTCCGCTTTCGACCACGAGCTCGTCAGTCAGCTCTTCCCCAAACTCT
ATGGTCAGCCCTCTGTCTCCTTCGCTTCTCAACCGTCCGCTGTCACCACT
CCCAAGATCGTCGGTGTCGTCTTGTCTGGCGGTCCTGCTCCTGGCGGCCA
TAATGTCATCTGTGGCATGTTCGACTTCATCACAAAGCTCCACTCTCAGT
CCAAGCTTCTTGGTTTCCGCTCTGGGCCGGACGGACTGCTCAAAGCCGAC
TATGTGCAGTTGGATGCAGACATGGTGGCCCCATATCGTAACCAAGGCGG
CTTTCACATGATTGGGTCTGGTCGCACCAAGATTGAGACCCCCGCTCAGT
TTGAAGCCGTTCGCAACACAGTGCAGCAGCTTCAGCTCGATGCTCTTGTC
ATCGTCGGTGGCGATGACAGTAATAGCAATGCCATGAAACTTGCGGAGGA
CTTCAGCGCTCATGGTTTGAAGTGTTGTGTTAATGGGGCTCCCAAGACTA
TTGATAACGATCTGCGAAACGCCCAAATTCAGGTATCCTTCGGTTTTGAT
ACTGCCTCTAAGAGCTATTGCGAGAGCGTAGCCAGTCTCGCCTTTGACGC
TATCTCTGCTCGAAAGGCCTACCACTTTGTTCGCGTCATGGGACGCTCGG
CCAGTCATATTGCTCTGGAATGTGCTTTGCAAACTCATCCTAACCTCTGT
TTCATTGGCGAAGAGGTCAAGCACAATGCTATTACGCTTACAGACATTGT
TGATCAAATTGTCAAGCTTATTGTTGAAAGAGCGGATATGGGCAAGAACT
ATGGTGTCATCGTTCTTCCAGAAGGGCTTGTAGAGTTCATGCCCGATGTT
GAGGCGCTTATCTATGAACTCAACGAAATTCTCGCTCATGCCGAGAAGCC
TCTCACCCGAGATGAAATCACAGCTGCTCTTTCTGTCACTAATTCAAGTC
TTTTTGCGAAGTTACCCGAAGCAATCGCGAACCAACTAATGCTTGAGCGT
GATCCTCATGGAAATGTTCAGGTCGCCAAGATTGAAGCTGAACGTCTGCT
CATCGGCATGGCTTCGGCCCAACTGTCTTCCCTGAAGAAACGAGGTTTAT
ACTCTGGCAAGTTCTCCGGCGTTCCCCATTACCTGGGCTACGAAGGAAGA
TGCGCTATGCCTTCCAACTTTGATGCGAACTACACTTACGGACTTGGACG
AGTCGCCGCGGCGCTCTGCTGCAATGAGAAGACGGGTTACATAGCTACTT
TGTCCAATCTGACAAAGGCCCCGGAGGAATGGGTCCCTGCTGGCTTCCCT
CTCACAATGATGATGAACGTTGAAAGAAGGCATGGCAAGGACACAGCTGT
AATCAAGAAGATGCTTGTCGATCTTGAAGGCGCCCCGTTCATCGAGTTCG
TGCAAAGCAGAGACTCGTGGAAGTTGGGAGACGAGTACCGTAGTCCGGGT
ACGTCACAGTACTGGGGACCTACTGCTGATGTGGTCTCCATGTCACTTCA
GTTGGAAGCTGAGGCCGCTACGCAGTAG

protein sequence of Gcaud3414.t1

>Gcaud3414.t1 ID=Gcaud3414.t1|Name=Gcaud3414.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=576bp
MATKLSAAVDMPSPVLVDVHTSKLLSDLAREHRNLSPLQRARLQYNPRCN
PVLAEPAAVTLVDGAPTTSAFDHELVSQLFPKLYGQPSVSFASQPSAVTT
PKIVGVVLSGGPAPGGHNVICGMFDFITKLHSQSKLLGFRSGPDGLLKAD
YVQLDADMVAPYRNQGGFHMIGSGRTKIETPAQFEAVRNTVQQLQLDALV
IVGGDDSNSNAMKLAEDFSAHGLKCCVNGAPKTIDNDLRNAQIQVSFGFD
TASKSYCESVASLAFDAISARKAYHFVRVMGRSASHIALECALQTHPNLC
FIGEEVKHNAITLTDIVDQIVKLIVERADMGKNYGVIVLPEGLVEFMPDV
EALIYELNEILAHAEKPLTRDEITAALSVTNSSLFAKLPEAIANQLMLER
DPHGNVQVAKIEAERLLIGMASAQLSSLKKRGLYSGKFSGVPHYLGYEGR
CAMPSNFDANYTYGLGRVAAALCCNEKTGYIATLSNLTKAPEEWVPAGFP
LTMMMNVERRHGKDTAVIKKMLVDLEGAPFIEFVQSRDSWKLGDEYRSPG
TSQYWGPTADVVSMSLQLEAEAATQ*

mRNA from alignment at NODE_973_length_15615_cov_5.661105:8049..9776-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3414.t1 ID=Gcaud3414.t1|Name=Gcaud3414.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1728bp|location=Sequence derived from alignment at NODE_973_length_15615_cov_5.661105:8049..9776- (Gracilaria caudata M_176_S67 male)
ATGGCTACCAAGCTCTCCGCTGCCGTTGATATGCCTAGTCCTGTCCTTGT
AGACGTGCACACGTCCAAGCTGCTCTCCGATTTGGCGCGCGAGCACCGTA
ACCTGTCCCCGTTGCAGCGTGCTCGCCTACAGTATAATCCTCGCTGCAAC
CCTGTGCTCGCCGAGCCTGCTGCTGTCACCCTTGTGGACGGCGCTCCCAC
CACTTCCGCTTTCGACCACGAGCTCGTCAGTCAGCTCTTCCCCAAACTCT
ATGGTCAGCCCTCTGTCTCCTTCGCTTCTCAACCGTCCGCTGTCACCACT
CCCAAGATCGTCGGTGTCGTCTTGTCTGGCGGTCCTGCTCCTGGCGGCCA
TAATGTCATCTGTGGCATGTTCGACTTCATCACAAAGCTCCACTCTCAGT
CCAAGCTTCTTGGTTTCCGCTCTGGGCCGGACGGACTGCTCAAAGCCGAC
TATGTGCAGTTGGATGCAGACATGGTGGCCCCATATCGTAACCAAGGCGG
CTTTCACATGATTGGGTCTGGTCGCACCAAGATTGAGACCCCCGCTCAGT
TTGAAGCCGTTCGCAACACAGTGCAGCAGCTTCAGCTCGATGCTCTTGTC
ATCGTCGGTGGCGATGACAGTAATAGCAATGCCATGAAACTTGCGGAGGA
CTTCAGCGCTCATGGTTTGAAGTGTTGTGTTAATGGGGCTCCCAAGACTA
TTGATAACGATCTGCGAAACGCCCAAATTCAGGTATCCTTCGGTTTTGAT
ACTGCCTCTAAGAGCTATTGCGAGAGCGTAGCCAGTCTCGCCTTTGACGC
TATCTCTGCTCGAAAGGCCTACCACTTTGTTCGCGTCATGGGACGCTCGG
CCAGTCATATTGCTCTGGAATGTGCTTTGCAAACTCATCCTAACCTCTGT
TTCATTGGCGAAGAGGTCAAGCACAATGCTATTACGCTTACAGACATTGT
TGATCAAATTGTCAAGCTTATTGTTGAAAGAGCGGATATGGGCAAGAACT
ATGGTGTCATCGTTCTTCCAGAAGGGCTTGTAGAGTTCATGCCCGATGTT
GAGGCGCTTATCTATGAACTCAACGAAATTCTCGCTCATGCCGAGAAGCC
TCTCACCCGAGATGAAATCACAGCTGCTCTTTCTGTCACTAATTCAAGTC
TTTTTGCGAAGTTACCCGAAGCAATCGCGAACCAACTAATGCTTGAGCGT
GATCCTCATGGAAATGTTCAGGTCGCCAAGATTGAAGCTGAACGTCTGCT
CATCGGCATGGCTTCGGCCCAACTGTCTTCCCTGAAGAAACGAGGTTTAT
ACTCTGGCAAGTTCTCCGGCGTTCCCCATTACCTGGGCTACGAAGGAAGA
TGCGCTATGCCTTCCAACTTTGATGCGAACTACACTTACGGACTTGGACG
AGTCGCCGCGGCGCTCTGCTGCAATGAGAAGACGGGTTACATAGCTACTT
TGTCCAATCTGACAAAGGCCCCGGAGGAATGGGTCCCTGCTGGCTTCCCT
CTCACAATGATGATGAACGTTGAAAGAAGGCATGGCAAGGACACAGCTGT
AATCAAGAAGATGCTTGTCGATCTTGAAGGCGCCCCGTTCATCGAGTTCG
TGCAAAGCAGAGACTCGTGGAAGTTGGGAGACGAGTACCGTAGTCCGGGT
ACGTCACAGTACTGGGGACCTACTGCTGATGTGGTCTCCATGTCACTTCA
GTTGGAAGCTGAGGCCGCTACGCAGTAG

Coding sequence (CDS) from alignment at NODE_973_length_15615_cov_5.661105:8049..9776-

>Gcaud3414.t1 ID=Gcaud3414.t1|Name=Gcaud3414.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1728bp|location=Sequence derived from alignment at NODE_973_length_15615_cov_5.661105:8049..9776- (Gracilaria caudata M_176_S67 male)
ATGGCTACCAAGCTCTCCGCTGCCGTTGATATGCCTAGTCCTGTCCTTGT
AGACGTGCACACGTCCAAGCTGCTCTCCGATTTGGCGCGCGAGCACCGTA
ACCTGTCCCCGTTGCAGCGTGCTCGCCTACAGTATAATCCTCGCTGCAAC
CCTGTGCTCGCCGAGCCTGCTGCTGTCACCCTTGTGGACGGCGCTCCCAC
CACTTCCGCTTTCGACCACGAGCTCGTCAGTCAGCTCTTCCCCAAACTCT
ATGGTCAGCCCTCTGTCTCCTTCGCTTCTCAACCGTCCGCTGTCACCACT
CCCAAGATCGTCGGTGTCGTCTTGTCTGGCGGTCCTGCTCCTGGCGGCCA
TAATGTCATCTGTGGCATGTTCGACTTCATCACAAAGCTCCACTCTCAGT
CCAAGCTTCTTGGTTTCCGCTCTGGGCCGGACGGACTGCTCAAAGCCGAC
TATGTGCAGTTGGATGCAGACATGGTGGCCCCATATCGTAACCAAGGCGG
CTTTCACATGATTGGGTCTGGTCGCACCAAGATTGAGACCCCCGCTCAGT
TTGAAGCCGTTCGCAACACAGTGCAGCAGCTTCAGCTCGATGCTCTTGTC
ATCGTCGGTGGCGATGACAGTAATAGCAATGCCATGAAACTTGCGGAGGA
CTTCAGCGCTCATGGTTTGAAGTGTTGTGTTAATGGGGCTCCCAAGACTA
TTGATAACGATCTGCGAAACGCCCAAATTCAGGTATCCTTCGGTTTTGAT
ACTGCCTCTAAGAGCTATTGCGAGAGCGTAGCCAGTCTCGCCTTTGACGC
TATCTCTGCTCGAAAGGCCTACCACTTTGTTCGCGTCATGGGACGCTCGG
CCAGTCATATTGCTCTGGAATGTGCTTTGCAAACTCATCCTAACCTCTGT
TTCATTGGCGAAGAGGTCAAGCACAATGCTATTACGCTTACAGACATTGT
TGATCAAATTGTCAAGCTTATTGTTGAAAGAGCGGATATGGGCAAGAACT
ATGGTGTCATCGTTCTTCCAGAAGGGCTTGTAGAGTTCATGCCCGATGTT
GAGGCGCTTATCTATGAACTCAACGAAATTCTCGCTCATGCCGAGAAGCC
TCTCACCCGAGATGAAATCACAGCTGCTCTTTCTGTCACTAATTCAAGTC
TTTTTGCGAAGTTACCCGAAGCAATCGCGAACCAACTAATGCTTGAGCGT
GATCCTCATGGAAATGTTCAGGTCGCCAAGATTGAAGCTGAACGTCTGCT
CATCGGCATGGCTTCGGCCCAACTGTCTTCCCTGAAGAAACGAGGTTTAT
ACTCTGGCAAGTTCTCCGGCGTTCCCCATTACCTGGGCTACGAAGGAAGA
TGCGCTATGCCTTCCAACTTTGATGCGAACTACACTTACGGACTTGGACG
AGTCGCCGCGGCGCTCTGCTGCAATGAGAAGACGGGTTACATAGCTACTT
TGTCCAATCTGACAAAGGCCCCGGAGGAATGGGTCCCTGCTGGCTTCCCT
CTCACAATGATGATGAACGTTGAAAGAAGGCATGGCAAGGACACAGCTGT
AATCAAGAAGATGCTTGTCGATCTTGAAGGCGCCCCGTTCATCGAGTTCG
TGCAAAGCAGAGACTCGTGGAAGTTGGGAGACGAGTACCGTAGTCCGGGT
ACGTCACAGTACTGGGGACCTACTGCTGATGTGGTCTCCATGTCACTTCA
GTTGGAAGCTGAGGCCGCTACGCAGTAG