Gcaud3409.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3409.t1
Unique Name	Gcaud3409.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	542

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1537_length_9877_cov_4.516963	contig	NODE_1537_length_9877_cov_4.516963:8182..9807 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMT465CT
PFAMs	CBM_20,DSPc
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14165
Evalue	9.66e-84
EggNOG OGs	COG2453@1\|root,KOG1716@2759\|Eukaryota
EC	3.1.3.16,3.1.3.48
Description	protein tyrosine/serine/threonine phosphatase activity
COG category	T
BRITE	ko00000,ko01000,ko01009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3409	Gcaud3409	Gracilaria caudata M_176_S67 male	gene	NODE_1537_length_9877_cov_4.516963 8182..9807 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3409.t1.stop1	Gcaud3409.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1537_length_9877_cov_4.516963 8182..8184 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3409.t1.CDS1	Gcaud3409.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1537_length_9877_cov_4.516963 8182..9807 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3409.t1.exon1	Gcaud3409.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1537_length_9877_cov_4.516963 8182..9807 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3409.t1.start1	Gcaud3409.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1537_length_9877_cov_4.516963 9805..9807 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3409.t1	Gcaud3409.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1537_length_9877_cov_4.516963 8182..9807 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1537_length_9877_cov_4.516963:8182..9807-
coding sequence from alignment at NODE_1537_length_9877_cov_4.516963:8182..9807-

mRNA sequence

>Gcaud3409.t1 ID=Gcaud3409.t1|Name=Gcaud3409.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=542bp
MRFRVQRELPFGHSLLLVGSVPALGAWDPSAARPCEWTSNHLWTVHVPSP
PFAAPARFEFKFCERAADGGVRWEPGHNHVALLPLHLPPRFTLDVQWGRP
ASHRVPSAAAPNGDSAVSAAAAAHYAPGAASPPPTPARCPLARAPVSDPL
SIAVARVAAHASDDALPPPNLEPLTFRVECDLQPGESLFMLGSIPELGEW
NKAHSPPMTAVATGVFELVMRLPRARLSQRFEYKYFTRCSDGSRRWEKGA
NRVACAAEKPLPRVWHQRWDKVCVQFSIYYPPPEGAVMHVTGDLPQIGAW
FKPGPTRMQLGPVQMLETDVKGSKWKLDVWLEPPVPSFSYRYILVNTRTK
HELWEREPNRRALFEEKGPLVNGERQLRDVNFVADLLFDEVPPNMFIGPY
PQSEDDVDQMARAGVTAVFNVQTDEDFKHRAIQWPLLLQRYAEHDIKVVR
HQIRDFDRDSLRARLKSATRALERLINEGRKVYIHCTAGMGRAPACAVSY
LCWVKGMQLEDAVAFVKKHRTVAVPNVPVLRDALKEPYEQI*

spliced messenger RNA

>Gcaud3409.t1 ID=Gcaud3409.t1|Name=Gcaud3409.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1626bp|location=Sequence derived from alignment at NODE_1537_length_9877_cov_4.516963:8182..9807- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTCCGCGTGCAGCGAGAGCTGCCGTTCGGACACTCGCTGCTTCT
GGTAGGCAGCGTACCGGCGCTTGGCGCGTGGGATCCGTCCGCGGCGCGCC
CGTGCGAGTGGACCAGCAACCATCTGTGGACCGTTCACGTGCCGTCGCCG
CCGTTCGCCGCGCCTGCGCGCTTCGAGTTCAAGTTCTGCGAGCGCGCCGC
CGACGGCGGAGTGCGTTGGGAGCCCGGCCACAACCACGTCGCGCTGCTTC
CGCTGCATCTGCCGCCGCGCTTCACGCTCGACGTGCAGTGGGGCCGCCCG
GCGTCGCACCGAGTGCCGTCTGCCGCCGCGCCTAACGGCGATTCGGCGGT
TTCCGCCGCTGCTGCCGCGCACTACGCACCGGGAGCGGCCAGTCCGCCGC
CCACGCCTGCGCGTTGCCCGCTGGCGCGTGCGCCTGTGTCTGACCCGTTG
TCTATCGCCGTCGCGCGCGTGGCTGCGCATGCGAGCGACGATGCGCTGCC
GCCGCCCAACCTGGAGCCGCTCACCTTTCGCGTGGAGTGCGATTTGCAGC
CTGGAGAATCGCTGTTCATGCTGGGCAGCATCCCGGAGCTGGGCGAGTGG
AACAAGGCGCACTCGCCGCCCATGACCGCCGTTGCTACTGGCGTGTTTGA
GCTTGTCATGCGGCTGCCGCGCGCGCGTCTGTCGCAGCGCTTCGAGTACA
AGTACTTTACGAGATGTTCCGACGGTAGTCGTCGCTGGGAGAAGGGCGCC
AACCGCGTCGCGTGCGCCGCGGAGAAGCCGCTGCCGCGCGTGTGGCACCA
GCGTTGGGATAAGGTGTGTGTGCAGTTTAGTATCTATTATCCGCCGCCAG
AGGGTGCTGTGATGCACGTCACGGGTGATCTGCCGCAGATTGGCGCCTGG
TTCAAGCCGGGGCCTACTCGTATGCAGCTTGGCCCGGTGCAGATGCTTGA
AACTGACGTCAAGGGTAGTAAATGGAAGCTGGATGTGTGGCTTGAGCCGC
CCGTGCCCTCGTTCTCATACAGGTACATTCTGGTGAACACGCGCACCAAA
CATGAGCTCTGGGAGCGCGAACCGAACCGTCGTGCGCTGTTTGAAGAGAA
GGGGCCGCTCGTCAACGGCGAGCGCCAGCTGCGCGATGTCAATTTTGTGG
CCGACTTGTTGTTCGATGAGGTGCCGCCGAATATGTTCATCGGACCGTAT
CCGCAAAGCGAGGATGACGTCGATCAGATGGCGCGTGCCGGCGTCACTGC
TGTGTTCAACGTGCAAACCGATGAGGATTTCAAGCACCGAGCCATTCAGT
GGCCGCTGTTGTTGCAAAGATACGCTGAGCACGACATAAAGGTTGTGCGT
CACCAGATTCGCGACTTTGATCGTGACTCGCTTAGAGCGCGCTTGAAAAG
TGCAACACGTGCGTTGGAGCGCCTCATCAACGAAGGCAGGAAGGTGTACA
TTCACTGTACGGCGGGCATGGGCAGGGCGCCGGCGTGCGCTGTGTCCTAC
TTGTGTTGGGTCAAGGGCATGCAGCTGGAAGACGCTGTTGCGTTTGTGAA
GAAGCACCGCACCGTCGCTGTGCCTAACGTTCCCGTGCTTCGCGACGCGC
TAAAGGAGCCGTATGAACAAATCTAG

protein sequence of Gcaud3409.t1

>Gcaud3409.t1 ID=Gcaud3409.t1|Name=Gcaud3409.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=542bp
MRFRVQRELPFGHSLLLVGSVPALGAWDPSAARPCEWTSNHLWTVHVPSP
PFAAPARFEFKFCERAADGGVRWEPGHNHVALLPLHLPPRFTLDVQWGRP
ASHRVPSAAAPNGDSAVSAAAAAHYAPGAASPPPTPARCPLARAPVSDPL
SIAVARVAAHASDDALPPPNLEPLTFRVECDLQPGESLFMLGSIPELGEW
NKAHSPPMTAVATGVFELVMRLPRARLSQRFEYKYFTRCSDGSRRWEKGA
NRVACAAEKPLPRVWHQRWDKVCVQFSIYYPPPEGAVMHVTGDLPQIGAW
FKPGPTRMQLGPVQMLETDVKGSKWKLDVWLEPPVPSFSYRYILVNTRTK
HELWEREPNRRALFEEKGPLVNGERQLRDVNFVADLLFDEVPPNMFIGPY
PQSEDDVDQMARAGVTAVFNVQTDEDFKHRAIQWPLLLQRYAEHDIKVVR
HQIRDFDRDSLRARLKSATRALERLINEGRKVYIHCTAGMGRAPACAVSY
LCWVKGMQLEDAVAFVKKHRTVAVPNVPVLRDALKEPYEQI*

mRNA from alignment at NODE_1537_length_9877_cov_4.516963:8182..9807-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3409.t1 ID=Gcaud3409.t1|Name=Gcaud3409.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1626bp|location=Sequence derived from alignment at NODE_1537_length_9877_cov_4.516963:8182..9807- (Gracilaria caudata M_176_S67 male)
ATGCGCTTCCGCGTGCAGCGAGAGCTGCCGTTCGGACACTCGCTGCTTCT
GGTAGGCAGCGTACCGGCGCTTGGCGCGTGGGATCCGTCCGCGGCGCGCC
CGTGCGAGTGGACCAGCAACCATCTGTGGACCGTTCACGTGCCGTCGCCG
CCGTTCGCCGCGCCTGCGCGCTTCGAGTTCAAGTTCTGCGAGCGCGCCGC
CGACGGCGGAGTGCGTTGGGAGCCCGGCCACAACCACGTCGCGCTGCTTC
CGCTGCATCTGCCGCCGCGCTTCACGCTCGACGTGCAGTGGGGCCGCCCG
GCGTCGCACCGAGTGCCGTCTGCCGCCGCGCCTAACGGCGATTCGGCGGT
TTCCGCCGCTGCTGCCGCGCACTACGCACCGGGAGCGGCCAGTCCGCCGC
CCACGCCTGCGCGTTGCCCGCTGGCGCGTGCGCCTGTGTCTGACCCGTTG
TCTATCGCCGTCGCGCGCGTGGCTGCGCATGCGAGCGACGATGCGCTGCC
GCCGCCCAACCTGGAGCCGCTCACCTTTCGCGTGGAGTGCGATTTGCAGC
CTGGAGAATCGCTGTTCATGCTGGGCAGCATCCCGGAGCTGGGCGAGTGG
AACAAGGCGCACTCGCCGCCCATGACCGCCGTTGCTACTGGCGTGTTTGA
GCTTGTCATGCGGCTGCCGCGCGCGCGTCTGTCGCAGCGCTTCGAGTACA
AGTACTTTACGAGATGTTCCGACGGTAGTCGTCGCTGGGAGAAGGGCGCC
AACCGCGTCGCGTGCGCCGCGGAGAAGCCGCTGCCGCGCGTGTGGCACCA
GCGTTGGGATAAGGTGTGTGTGCAGTTTAGTATCTATTATCCGCCGCCAG
AGGGTGCTGTGATGCACGTCACGGGTGATCTGCCGCAGATTGGCGCCTGG
TTCAAGCCGGGGCCTACTCGTATGCAGCTTGGCCCGGTGCAGATGCTTGA
AACTGACGTCAAGGGTAGTAAATGGAAGCTGGATGTGTGGCTTGAGCCGC
CCGTGCCCTCGTTCTCATACAGGTACATTCTGGTGAACACGCGCACCAAA
CATGAGCTCTGGGAGCGCGAACCGAACCGTCGTGCGCTGTTTGAAGAGAA
GGGGCCGCTCGTCAACGGCGAGCGCCAGCTGCGCGATGTCAATTTTGTGG
CCGACTTGTTGTTCGATGAGGTGCCGCCGAATATGTTCATCGGACCGTAT
CCGCAAAGCGAGGATGACGTCGATCAGATGGCGCGTGCCGGCGTCACTGC
TGTGTTCAACGTGCAAACCGATGAGGATTTCAAGCACCGAGCCATTCAGT
GGCCGCTGTTGTTGCAAAGATACGCTGAGCACGACATAAAGGTTGTGCGT
CACCAGATTCGCGACTTTGATCGTGACTCGCTTAGAGCGCGCTTGAAAAG
TGCAACACGTGCGTTGGAGCGCCTCATCAACGAAGGCAGGAAGGTGTACA
TTCACTGTACGGCGGGCATGGGCAGGGCGCCGGCGTGCGCTGTGTCCTAC
TTGTGTTGGGTCAAGGGCATGCAGCTGGAAGACGCTGTTGCGTTTGTGAA
GAAGCACCGCACCGTCGCTGTGCCTAACGTTCCCGTGCTTCGCGACGCGC
TAAAGGAGCCGTATGAACAAATCTAG

Coding sequence (CDS) from alignment at NODE_1537_length_9877_cov_4.516963:8182..9807-

>Gcaud3409.t1 ID=Gcaud3409.t1|Name=Gcaud3409.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1626bp|location=Sequence derived from alignment at NODE_1537_length_9877_cov_4.516963:8182..9807- (Gracilaria caudata M_176_S67 male)
ATGCGCTTCCGCGTGCAGCGAGAGCTGCCGTTCGGACACTCGCTGCTTCT
GGTAGGCAGCGTACCGGCGCTTGGCGCGTGGGATCCGTCCGCGGCGCGCC
CGTGCGAGTGGACCAGCAACCATCTGTGGACCGTTCACGTGCCGTCGCCG
CCGTTCGCCGCGCCTGCGCGCTTCGAGTTCAAGTTCTGCGAGCGCGCCGC
CGACGGCGGAGTGCGTTGGGAGCCCGGCCACAACCACGTCGCGCTGCTTC
CGCTGCATCTGCCGCCGCGCTTCACGCTCGACGTGCAGTGGGGCCGCCCG
GCGTCGCACCGAGTGCCGTCTGCCGCCGCGCCTAACGGCGATTCGGCGGT
TTCCGCCGCTGCTGCCGCGCACTACGCACCGGGAGCGGCCAGTCCGCCGC
CCACGCCTGCGCGTTGCCCGCTGGCGCGTGCGCCTGTGTCTGACCCGTTG
TCTATCGCCGTCGCGCGCGTGGCTGCGCATGCGAGCGACGATGCGCTGCC
GCCGCCCAACCTGGAGCCGCTCACCTTTCGCGTGGAGTGCGATTTGCAGC
CTGGAGAATCGCTGTTCATGCTGGGCAGCATCCCGGAGCTGGGCGAGTGG
AACAAGGCGCACTCGCCGCCCATGACCGCCGTTGCTACTGGCGTGTTTGA
GCTTGTCATGCGGCTGCCGCGCGCGCGTCTGTCGCAGCGCTTCGAGTACA
AGTACTTTACGAGATGTTCCGACGGTAGTCGTCGCTGGGAGAAGGGCGCC
AACCGCGTCGCGTGCGCCGCGGAGAAGCCGCTGCCGCGCGTGTGGCACCA
GCGTTGGGATAAGGTGTGTGTGCAGTTTAGTATCTATTATCCGCCGCCAG
AGGGTGCTGTGATGCACGTCACGGGTGATCTGCCGCAGATTGGCGCCTGG
TTCAAGCCGGGGCCTACTCGTATGCAGCTTGGCCCGGTGCAGATGCTTGA
AACTGACGTCAAGGGTAGTAAATGGAAGCTGGATGTGTGGCTTGAGCCGC
CCGTGCCCTCGTTCTCATACAGGTACATTCTGGTGAACACGCGCACCAAA
CATGAGCTCTGGGAGCGCGAACCGAACCGTCGTGCGCTGTTTGAAGAGAA
GGGGCCGCTCGTCAACGGCGAGCGCCAGCTGCGCGATGTCAATTTTGTGG
CCGACTTGTTGTTCGATGAGGTGCCGCCGAATATGTTCATCGGACCGTAT
CCGCAAAGCGAGGATGACGTCGATCAGATGGCGCGTGCCGGCGTCACTGC
TGTGTTCAACGTGCAAACCGATGAGGATTTCAAGCACCGAGCCATTCAGT
GGCCGCTGTTGTTGCAAAGATACGCTGAGCACGACATAAAGGTTGTGCGT
CACCAGATTCGCGACTTTGATCGTGACTCGCTTAGAGCGCGCTTGAAAAG
TGCAACACGTGCGTTGGAGCGCCTCATCAACGAAGGCAGGAAGGTGTACA
TTCACTGTACGGCGGGCATGGGCAGGGCGCCGGCGTGCGCTGTGTCCTAC
TTGTGTTGGGTCAAGGGCATGCAGCTGGAAGACGCTGTTGCGTTTGTGAA
GAAGCACCGCACCGTCGCTGTGCCTAACGTTCCCGTGCTTCGCGACGCGC
TAAAGGAGCCGTATGAACAAATCTAG