Gcaud3406.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3406.t1
Unique NameGcaud3406.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1537_length_9877_cov_4.516963contigNODE_1537_length_9877_cov_4.516963:2..193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3406Gcaud3406Gracilaria caudata M_176_S67 malegeneNODE_1537_length_9877_cov_4.516963 2..193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3406.t1Gcaud3406.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1537_length_9877_cov_4.516963 2..193 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3406.t1.CDS1Gcaud3406.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1537_length_9877_cov_4.516963 2..39 -
Gcaud3406.t1.CDS2Gcaud3406.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1537_length_9877_cov_4.516963 139..193 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3406.t1.exon1Gcaud3406.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1537_length_9877_cov_4.516963 2..39 -
Gcaud3406.t1.exon2Gcaud3406.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1537_length_9877_cov_4.516963 139..193 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3406.t1.intron1Gcaud3406.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1537_length_9877_cov_4.516963 40..138 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3406.t1.start1Gcaud3406.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1537_length_9877_cov_4.516963 191..193 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3406.t1 ID=Gcaud3406.t1|Name=Gcaud3406.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=31bp
MKRGKRKAIQVGMMMKLKAAPIKERMWSAIK
back to top

spliced messenger RNA

>Gcaud3406.t1 ID=Gcaud3406.t1|Name=Gcaud3406.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=93bp|location=Sequence derived from alignment at NODE_1537_length_9877_cov_4.516963:2..193- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACGTGGTAAGAGGAAAGCAATTCAAGTTGGAATGATGATGAAACT
GAAAGCTGCTCCCATAAAAGAACGGATGTGGAGTGCAATAAAA
back to top

protein sequence of Gcaud3406.t1

>Gcaud3406.t1 ID=Gcaud3406.t1|Name=Gcaud3406.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=31bp
MKRGKRKAIQVGMMMKLKAAPIKERMWSAIK
back to top

mRNA from alignment at NODE_1537_length_9877_cov_4.516963:2..193-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3406.t1 ID=Gcaud3406.t1|Name=Gcaud3406.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=192bp|location=Sequence derived from alignment at NODE_1537_length_9877_cov_4.516963:2..193- (Gracilaria caudata M_176_S67 male)
ATGAAACGTGGTAAGAGGAAAGCAATTCAAGTTGGAATGATGATGAAACT
GAAAGGTAAGCGACGAGCATTGGTCAAAGCACACATCTATATAGGCGAAG
AAGATATAAAACTGATTCGTACACAATGTCATAAATTAATGTACATCACG
TCAGCTGCTCCCATAAAAGAACGGATGTGGAGTGCAATAAAA
back to top

Coding sequence (CDS) from alignment at NODE_1537_length_9877_cov_4.516963:2..193-

>Gcaud3406.t1 ID=Gcaud3406.t1|Name=Gcaud3406.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=93bp|location=Sequence derived from alignment at NODE_1537_length_9877_cov_4.516963:2..193- (Gracilaria caudata M_176_S67 male)
ATGAAACGTGGTAAGAGGAAAGCAATTCAAGTTGGAATGATGATGAAACT
GAAAGCTGCTCCCATAAAAGAACGGATGTGGAGTGCAATAAAA
back to top