Gcaud3403.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3403.t1
Unique NameGcaud3403.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_100_length_51433_cov_4.606891contigNODE_100_length_51433_cov_4.606891:46985..48178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707024.1
PFAMsFBPase
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K01507,ko:K03841
KEGG ReactionR00762,R04780
KEGG Pathwayko00010,ko00030,ko00051,ko00190,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00190,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910
KEGG ModuleM00003,M00165,M00167,M00344
Evalue1.86e-11
EggNOG OGsCOG0158@1|root,KOG1458@2759|Eukaryota
EC3.1.3.11,3.6.1.1
Descriptionfructose 1,6-bisphosphate 1-phosphatase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3403Gcaud3403Gracilaria caudata M_176_S67 malegeneNODE_100_length_51433_cov_4.606891 46985..48178 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3403.t1Gcaud3403.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_100_length_51433_cov_4.606891 46985..48178 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3403.t1.start1Gcaud3403.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_100_length_51433_cov_4.606891 46985..46987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3403.t1.CDS1Gcaud3403.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_100_length_51433_cov_4.606891 46985..47280 +
Gcaud3403.t1.CDS2Gcaud3403.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_100_length_51433_cov_4.606891 47515..47607 +
Gcaud3403.t1.CDS3Gcaud3403.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_100_length_51433_cov_4.606891 47726..47741 +
Gcaud3403.t1.CDS4Gcaud3403.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_100_length_51433_cov_4.606891 47819..47984 +
Gcaud3403.t1.CDS5Gcaud3403.t1.CDS5Gracilaria caudata M_176_S67 maleCDSNODE_100_length_51433_cov_4.606891 48072..48178 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3403.t1.exon1Gcaud3403.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_100_length_51433_cov_4.606891 46985..47280 +
Gcaud3403.t1.exon2Gcaud3403.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_100_length_51433_cov_4.606891 47515..47607 +
Gcaud3403.t1.exon3Gcaud3403.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_100_length_51433_cov_4.606891 47726..47741 +
Gcaud3403.t1.exon4Gcaud3403.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_100_length_51433_cov_4.606891 47819..47984 +
Gcaud3403.t1.exon5Gcaud3403.t1.exon5Gracilaria caudata M_176_S67 maleexonNODE_100_length_51433_cov_4.606891 48072..48178 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3403.t1.intron1Gcaud3403.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_100_length_51433_cov_4.606891 47281..47514 +
Gcaud3403.t1.intron2Gcaud3403.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_100_length_51433_cov_4.606891 47608..47725 +
Gcaud3403.t1.intron3Gcaud3403.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_100_length_51433_cov_4.606891 47742..47818 +
Gcaud3403.t1.intron4Gcaud3403.t1.intron4Gracilaria caudata M_176_S67 maleintronNODE_100_length_51433_cov_4.606891 47985..48071 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3403.t1.stop1Gcaud3403.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_100_length_51433_cov_4.606891 48176..48178 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3403.t1 ID=Gcaud3403.t1|Name=Gcaud3403.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=226bp
MQMPQDSSRSLTSSLISLSLEAAKHPSVLKTDDAEPATPPRTPPLTPPSP
EPEASSSTLHSTTFPSHVRTQSSLAPKHSSHHLVRLLDDISTVSHSISSV
YRRASPPSVSGTLLDLQQKLADQVAAGYVLAVTCTIFDTGCFIADFDAAV
RSGGIVLWYDLHLLCEAAPMALLSEQLGGRAVDANCSRILDLAVDDDNTH
KTVTFLAGPAHIIDSIESQMIPQLS*
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spliced messenger RNA

>Gcaud3403.t1 ID=Gcaud3403.t1|Name=Gcaud3403.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=678bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:46985..48178+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGATGCCGCAGGACAGTTCGCGTTCTCTTACTTCCTCTCTCATATC
TCTCAGCCTTGAGGCTGCGAAGCATCCTTCGGTGTTAAAGACTGACGATG
CAGAACCTGCCACTCCTCCTCGCACCCCACCGCTTACCCCACCATCCCCA
GAGCCTGAAGCCTCCTCCAGCACTTTGCATTCCACTACTTTTCCCTCACA
CGTTCGTACACAGTCTTCACTCGCACCCAAACATTCTTCTCATCACCTTG
TTCGATTACTGGATGACATCTCCACAGTGAGTCATTCCATCTCTTCCGTT
TACAGACGTGCTTCTCCGCCCAGTGTTTCTGGCACGCTTCTGGATCTTCA
GCAGAAGCTGGCTGATCAAGTTGCAGCCGGTTACGTTCTGGCAGTGACAT
GTACTATATTCGATACTGGTTGCTTCATCGCAGACTTTGACGCCGCCGTA
CGTTCGGGTGGGATCGTCTTGTGGTATGACCTTCACTTGTTGTGTGAGGC
AGCGCCCATGGCACTTCTTTCGGAACAACTGGGTGGCCGGGCCGTAGATG
CCAACTGCAGTCGCATATTAGATTTGGCCGTAGACGATGACAACACCCAT
AAAACAGTTACATTCCTGGCGGGGCCGGCGCATATTATCGATTCCATAGA
GTCGCAAATGATTCCTCAACTGTCATAG
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protein sequence of Gcaud3403.t1

>Gcaud3403.t1 ID=Gcaud3403.t1|Name=Gcaud3403.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=226bp
MQMPQDSSRSLTSSLISLSLEAAKHPSVLKTDDAEPATPPRTPPLTPPSP
EPEASSSTLHSTTFPSHVRTQSSLAPKHSSHHLVRLLDDISTVSHSISSV
YRRASPPSVSGTLLDLQQKLADQVAAGYVLAVTCTIFDTGCFIADFDAAV
RSGGIVLWYDLHLLCEAAPMALLSEQLGGRAVDANCSRILDLAVDDDNTH
KTVTFLAGPAHIIDSIESQMIPQLS*
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mRNA from alignment at NODE_100_length_51433_cov_4.606891:46985..48178+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3403.t1 ID=Gcaud3403.t1|Name=Gcaud3403.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:46985..48178+ (Gracilaria caudata M_176_S67 male)
ATGCAGATGCCGCAGGACAGTTCGCGTTCTCTTACTTCCTCTCTCATATC
TCTCAGCCTTGAGGCTGCGAAGCATCCTTCGGTGTTAAAGACTGACGATG
CAGAACCTGCCACTCCTCCTCGCACCCCACCGCTTACCCCACCATCCCCA
GAGCCTGAAGCCTCCTCCAGCACTTTGCATTCCACTACTTTTCCCTCACA
CGTTCGTACACAGTCTTCACTCGCACCCAAACATTCTTCTCATCACCTTG
TTCGATTACTGGATGACATCTCCACAGTGAGTCATTCCATCTCTTCGTAC
GTGTCACAGCATCATCATGGATCTCAGCACCCCACTCTTGACACAGGAGT
GGCAACCACGCGTTTGTACCACGCCCTGTGTCATGACGGTTATGCTTGTA
TGATCCTTGCCAAAAACGAGAAGCCGCTCACCTTCAGTGATTCTGCTGTG
CACGGGCCATATGTTATCATGCTCACACCGCTGGATGTTGACCCCTGTGA
GCAGCATTTAACATGTGGTACTTCGTTCAGCGTTTACAGACGTGCTTCTC
CGCCCAGTGTTTCTGGCACGCTTCTGGATCTTCAGCAGAAGCTGGCTGAT
CAAGTTGCAGCCGGTTACGTTCTGTACGCATCCGCCACAACTCTCCTGTA
TACCATAGGAGATGGTGCCTTCTCATTCCATCTTCATCCAGTGGCAACGC
AGTATTTCCTACAAACCCACAAACCTCTGAAGTTTGCCCAGGGCAGTGAC
ATGTACTGTGAGTACTCAAAAATGAAAACAGACGAAAAGGTAGGCGCCGT
AGCAAGGAAGCTCACCACTCGTTTGGGAGGCAAGATATTCGATACTGGTT
GCTTCATCGCAGACTTTGACGCCGCCGTACGTTCGGGTGGGATCGTCTTG
TGGTATGACCTTCACTTGTTGTGTGAGGCAGCGCCCATGGCACTTCTTTC
GGAACAACTGGGTGGCCGGGCCGTAGATGCCAACTGCAGTCGCATATTAG
GTATGTTTCCCATTCACACCCTCAATGTTCACACTAAAACAGTGTCTAAC
TTGTAACTGACCCACATGCATTGTCGCATTTGAACAGATTTGGCCGTAGA
CGATGACAACACCCATAAAACAGTTACATTCCTGGCGGGGCCGGCGCATA
TTATCGATTCCATAGAGTCGCAAATGATTCCTCAACTGTCATAG
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Coding sequence (CDS) from alignment at NODE_100_length_51433_cov_4.606891:46985..48178+

>Gcaud3403.t1 ID=Gcaud3403.t1|Name=Gcaud3403.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=678bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:46985..48178+ (Gracilaria caudata M_176_S67 male)
ATGCAGATGCCGCAGGACAGTTCGCGTTCTCTTACTTCCTCTCTCATATC
TCTCAGCCTTGAGGCTGCGAAGCATCCTTCGGTGTTAAAGACTGACGATG
CAGAACCTGCCACTCCTCCTCGCACCCCACCGCTTACCCCACCATCCCCA
GAGCCTGAAGCCTCCTCCAGCACTTTGCATTCCACTACTTTTCCCTCACA
CGTTCGTACACAGTCTTCACTCGCACCCAAACATTCTTCTCATCACCTTG
TTCGATTACTGGATGACATCTCCACAGTGAGTCATTCCATCTCTTCCGTT
TACAGACGTGCTTCTCCGCCCAGTGTTTCTGGCACGCTTCTGGATCTTCA
GCAGAAGCTGGCTGATCAAGTTGCAGCCGGTTACGTTCTGGCAGTGACAT
GTACTATATTCGATACTGGTTGCTTCATCGCAGACTTTGACGCCGCCGTA
CGTTCGGGTGGGATCGTCTTGTGGTATGACCTTCACTTGTTGTGTGAGGC
AGCGCCCATGGCACTTCTTTCGGAACAACTGGGTGGCCGGGCCGTAGATG
CCAACTGCAGTCGCATATTAGATTTGGCCGTAGACGATGACAACACCCAT
AAAACAGTTACATTCCTGGCGGGGCCGGCGCATATTATCGATTCCATAGA
GTCGCAAATGATTCCTCAACTGTCATAG
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